Wall clock time and date at job start Tue Mar 31 2020 18:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42889 * 114.00124 * 2 1 4 4 C 1.53008 * 109.47154 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46957 * 65.00000 * 4 3 2 6 6 C 1.36941 * 119.99883 * 270.00522 * 5 4 3 7 7 H 1.07997 * 120.00125 * 141.45803 * 6 5 4 8 8 C 1.38814 * 119.99712 * 321.44853 * 6 5 4 9 9 N 1.31612 * 120.00264 * 338.84909 * 8 6 5 10 10 Si 1.86802 * 119.99744 * 158.84494 * 8 6 5 11 11 H 1.48505 * 109.46792 * 60.00443 * 10 8 6 12 12 H 1.48497 * 109.47041 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47381 * 300.00441 * 10 8 6 14 14 C 1.46499 * 119.99998 * 89.99970 * 5 4 3 15 15 C 1.52999 * 109.47516 * 264.70802 * 14 5 4 16 16 N 1.46497 * 109.47139 * 180.02562 * 15 14 5 17 17 C 1.34777 * 119.99666 * 179.97438 * 16 15 14 18 18 O 1.21690 * 120.00319 * 0.02562 * 17 16 15 19 19 C 1.46679 * 119.99852 * 179.97438 * 17 16 15 20 20 C 1.38050 * 126.20451 * 180.02562 * 19 17 16 21 21 C 1.39254 * 106.97891 * 179.97438 * 20 19 17 22 22 C 1.35970 * 108.03312 * 0.04651 * 21 20 19 23 23 N 1.35112 * 108.77020 * 359.91406 * 22 21 20 24 24 H 0.96996 * 125.68944 * 180.02562 * 23 22 21 25 25 C 1.51024 * 123.84682 * 179.82315 * 22 21 20 26 26 C 1.53317 * 108.41012 * 343.34377 * 25 22 21 27 27 C 1.53113 * 109.52455 * 50.18207 * 26 25 22 28 28 C 1.50828 * 127.70663 * 180.31247 * 21 20 19 29 29 H 1.09002 * 109.47261 * 59.99501 * 1 2 3 30 30 H 1.08999 * 109.47737 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47206 * 300.00095 * 1 2 3 32 32 H 1.08999 * 109.47817 * 60.00386 * 3 2 1 33 33 H 1.09003 * 109.47562 * 300.00245 * 3 2 1 34 34 H 1.08996 * 109.46881 * 305.00264 * 4 3 2 35 35 H 1.08995 * 109.47494 * 184.99914 * 4 3 2 36 36 H 0.97001 * 119.99893 * 179.97438 * 9 8 6 37 37 H 1.09006 * 109.46729 * 144.71051 * 14 5 4 38 38 H 1.08995 * 109.46831 * 24.71479 * 14 5 4 39 39 H 1.09000 * 109.47096 * 59.99944 * 15 14 5 40 40 H 1.09004 * 109.46889 * 300.00506 * 15 14 5 41 41 H 0.97000 * 120.00177 * 0.02562 * 16 15 14 42 42 H 1.07996 * 126.51370 * 359.97438 * 20 19 17 43 43 H 1.08999 * 109.67730 * 103.07518 * 25 22 21 44 44 H 1.09000 * 109.67285 * 223.61621 * 25 22 21 45 45 H 1.08998 * 109.46383 * 170.19505 * 26 25 22 46 46 H 1.08998 * 109.46742 * 290.16355 * 26 25 22 47 47 H 1.08996 * 109.47402 * 49.58425 * 27 26 25 48 48 H 1.08999 * 109.47422 * 169.58977 * 27 26 25 49 49 H 1.08996 * 109.68772 * 283.01036 * 28 21 20 50 50 H 1.09004 * 109.68559 * 43.56173 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0966 -0.7972 -1.3369 7 1 3.8065 -1.3102 -2.2419 8 6 4.5923 -1.5179 -0.2590 9 7 5.3197 -0.9149 0.6572 10 14 4.2266 -3.3436 -0.1088 11 1 4.7662 -4.0557 -1.2950 12 1 4.8646 -3.8766 1.1217 13 1 2.7579 -3.5498 -0.0334 14 6 4.2863 1.4005 -2.4148 15 6 3.0583 1.4881 -3.3231 16 7 3.3692 2.3239 -4.4855 17 6 2.4311 2.5433 -5.4279 18 8 1.3256 2.0476 -5.3131 19 6 2.7422 3.3805 -6.5914 20 6 1.8832 3.6887 -7.6273 21 6 2.5867 4.5044 -8.5098 22 6 3.8402 4.6796 -8.0129 23 7 3.9447 4.0028 -6.8483 24 1 4.7347 3.9609 -6.2870 25 6 4.9068 5.5049 -8.6927 26 6 4.4912 5.7263 -10.1518 27 6 3.0496 6.2399 -10.2010 28 6 2.0904 5.1152 -9.7965 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5680 0.8409 35 1 3.9787 2.1763 0.0889 36 1 5.6657 -1.4184 1.4106 37 1 5.1164 0.9604 -2.9676 38 1 4.5625 2.4002 -2.0796 39 1 2.2282 1.9281 -2.7704 40 1 2.7822 0.4883 -3.6583 41 1 4.2505 2.7187 -4.5772 42 1 0.8601 3.3597 -7.7331 43 1 5.0035 6.4666 -8.1887 44 1 5.8585 4.9747 -8.6585 45 1 5.1539 6.4598 -10.6109 46 1 4.5598 4.7843 -10.6959 47 1 2.9379 7.0756 -9.5102 48 1 2.8163 6.5712 -11.2129 49 1 2.0705 4.3569 -10.5792 50 1 1.0881 5.5178 -9.6492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279056372.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:20 Heat of formation + Delta-G solvation = -30.857391 kcal Electronic energy + Delta-G solvation = -28922.360318 eV Core-core repulsion = 24950.401602 eV Total energy + Delta-G solvation = -3971.958716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.70871 -39.06183 -37.26281 -36.52957 -35.75951 -34.20659 -32.37546 -31.44816 -29.94155 -29.27941 -28.77973 -27.28945 -25.61293 -24.58185 -23.61197 -22.51049 -21.85417 -21.28035 -20.47949 -19.85874 -18.71134 -18.30763 -16.75900 -16.01582 -15.82966 -15.52780 -15.36951 -15.04913 -14.88584 -14.59100 -14.22104 -14.07281 -14.02925 -13.81328 -13.69727 -13.47920 -13.30812 -13.20042 -12.71400 -12.60059 -12.51720 -12.04657 -11.96253 -11.78751 -11.18613 -11.16934 -11.02893 -10.88108 -10.79662 -10.74980 -10.69137 -10.61312 -10.08526 -9.99239 -9.88641 -9.72855 -8.93657 -8.86742 -8.67653 -8.39512 -8.02510 -6.58414 -5.74899 -3.32621 1.45034 2.55010 2.88685 3.35497 3.45936 3.49941 3.52406 3.58188 4.37375 4.52240 4.55906 4.56829 4.72235 4.87075 4.88338 5.07611 5.19725 5.25554 5.28151 5.36026 5.36548 5.52905 5.55804 5.63193 5.70376 5.76752 5.79194 5.82402 5.85793 5.90402 6.01800 6.06434 6.08880 6.11834 6.17660 6.26565 6.29132 6.55001 6.62670 6.64911 6.68460 6.71122 6.83583 6.94059 7.24611 7.61258 7.70671 7.88376 8.10356 8.37210 8.57627 9.20419 9.83504 10.37896 11.27663 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.002281 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.584313 B =12269.755955 C =12847.515855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.044 3.956 4 C 0.144 3.856 5 N -0.569 5.569 6 C -0.247 4.247 7 H 0.056 0.944 8 C 0.022 3.978 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.284 1.284 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.139 3.861 15 C 0.097 3.903 16 N -0.725 5.725 17 C 0.582 3.418 18 O -0.532 6.532 19 C -0.049 4.049 20 C -0.102 4.102 21 C -0.176 4.176 22 C 0.045 3.955 23 N -0.531 5.531 24 H 0.414 0.586 25 C -0.053 4.053 26 C -0.112 4.112 27 C -0.120 4.120 28 C -0.046 4.046 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.024 0.976 33 H 0.029 0.971 34 H 0.103 0.897 35 H 0.041 0.959 36 H 0.254 0.746 37 H 0.051 0.949 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.389 0.611 42 H 0.146 0.854 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.068 0.932 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.392 15.942 -17.116 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.036 4.036 4 C 0.017 3.983 5 N -0.289 5.289 6 C -0.377 4.377 7 H 0.074 0.926 8 C -0.178 4.178 9 N -0.535 5.535 10 Si 0.729 3.271 11 H -0.210 1.210 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.011 3.989 15 C -0.028 4.028 16 N -0.375 5.375 17 C 0.369 3.631 18 O -0.409 6.409 19 C -0.162 4.162 20 C -0.128 4.128 21 C -0.183 4.183 22 C -0.073 4.073 23 N -0.127 5.127 24 H 0.252 0.748 25 C -0.091 4.091 26 C -0.150 4.150 27 C -0.157 4.157 28 C -0.084 4.084 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.120 0.880 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.221 0.779 42 H 0.164 0.836 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.854 15.265 -16.678 22.685 hybrid contribution 0.211 -0.577 0.518 0.804 sum -1.643 14.688 -16.160 21.899 Atomic orbital electron populations 1.22641 0.84136 1.01535 0.98478 1.88208 1.16643 1.27475 1.94824 1.23489 0.98777 0.84324 0.96960 1.21067 0.87582 0.96582 0.93034 1.43502 1.75558 1.02866 1.06970 1.18774 1.36359 0.81307 1.01223 0.92602 1.25062 0.95949 0.97883 0.98877 1.69970 1.33566 1.36083 1.13856 0.86444 0.78603 0.85303 0.76779 1.21021 1.21889 1.20528 1.20990 0.93199 0.94711 0.90020 1.22495 1.01185 0.94139 0.85011 1.46022 1.14846 1.52615 1.24014 1.17080 0.84881 0.80080 0.81059 1.90839 1.22085 1.50824 1.77159 1.20583 0.87351 1.07475 1.00778 1.20988 0.99371 0.99638 0.92853 1.19246 0.93662 1.05729 0.99627 1.20424 0.97523 1.00699 0.88627 1.41728 1.12512 1.39113 1.19301 0.74830 1.20303 0.95091 0.98210 0.95492 1.21511 0.96863 1.01821 0.94842 1.21579 0.94509 0.98236 1.01389 1.20025 0.98453 0.96723 0.93191 0.95128 0.90701 0.95567 0.95766 0.95285 0.87956 0.94114 0.93625 0.93047 0.94259 0.92147 0.91318 0.77854 0.83643 0.90292 0.90675 0.91203 0.91354 0.91760 0.91591 0.91340 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -8.06 10.18 -35.23 -0.36 -8.41 16 3 C 0.04 0.90 6.28 37.16 0.23 1.14 16 4 C 0.14 3.30 5.76 -4.04 -0.02 3.27 16 5 N -0.57 -13.67 2.41 -173.24 -0.42 -14.09 16 6 C -0.25 -6.70 8.95 -15.06 -0.13 -6.84 16 7 H 0.06 1.55 7.91 -52.49 -0.42 1.14 16 8 C 0.02 0.62 4.95 -17.43 -0.09 0.53 16 9 N -0.89 -25.48 11.53 55.49 0.64 -24.84 16 10 Si 0.90 22.34 29.60 -169.99 -5.03 17.30 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 13 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.14 2.71 5.83 -4.04 -0.02 2.68 16 15 C 0.10 1.80 5.97 -4.04 -0.02 1.78 16 16 N -0.72 -10.88 5.55 -61.62 -0.34 -11.22 16 17 C 0.58 9.63 7.79 -12.85 -0.10 9.53 16 18 O -0.53 -10.97 16.88 5.20 0.09 -10.88 16 19 C -0.05 -0.67 7.06 -81.84 -0.58 -1.24 16 20 C -0.10 -1.35 10.62 -39.27 -0.42 -1.77 16 21 C -0.18 -1.92 5.91 -105.00 -0.62 -2.54 16 22 C 0.05 0.44 7.02 -81.80 -0.57 -0.14 16 23 N -0.53 -5.38 5.98 -5.49 -0.03 -5.41 16 24 H 0.41 3.06 8.19 -40.82 -0.33 2.72 16 25 C -0.05 -0.34 6.30 -27.56 -0.17 -0.52 16 26 C -0.11 -0.65 5.89 -26.51 -0.16 -0.80 16 27 C -0.12 -0.75 5.90 -26.54 -0.16 -0.91 16 28 C -0.05 -0.38 6.27 -27.69 -0.17 -0.55 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.58 6.48 -51.93 -0.34 0.25 16 34 H 0.10 2.71 5.58 -51.93 -0.29 2.42 16 35 H 0.04 0.84 7.86 -51.93 -0.41 0.44 16 36 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.04 0.69 7.83 -51.93 -0.41 0.28 16 39 H 0.06 1.21 6.48 -51.93 -0.34 0.87 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.39 4.50 7.60 -40.82 -0.31 4.19 16 42 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.43 8.11 -51.93 -0.42 0.00 16 47 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 403.13 15.07 6.08 6.08 Total: -1.00 -33.57 403.13 -9.58 -43.15 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.31 Total: 3.05 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.90 Total: 5.27 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.15 Total: -55.56 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.27 Total: -19.30 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.57 -9.58 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279056372.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.297 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds