Wall clock time and date at job start Tue Mar 31 2020 18:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42889 * 114.00124 * 2 1 4 4 C 1.53008 * 109.47154 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46957 * 65.00000 * 4 3 2 6 6 C 1.36941 * 119.99883 * 270.00522 * 5 4 3 7 7 H 1.07997 * 120.00125 * 141.45803 * 6 5 4 8 8 C 1.38814 * 119.99712 * 321.44853 * 6 5 4 9 9 N 1.31612 * 120.00264 * 338.84909 * 8 6 5 10 10 Si 1.86802 * 119.99744 * 158.84494 * 8 6 5 11 11 H 1.48505 * 109.46792 * 60.00443 * 10 8 6 12 12 H 1.48497 * 109.47041 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47381 * 300.00441 * 10 8 6 14 14 C 1.46499 * 119.99998 * 89.99970 * 5 4 3 15 15 C 1.52999 * 109.47516 * 264.70802 * 14 5 4 16 16 N 1.46497 * 109.47139 * 180.02562 * 15 14 5 17 17 C 1.34777 * 119.99666 * 179.97438 * 16 15 14 18 18 O 1.21690 * 120.00319 * 0.02562 * 17 16 15 19 19 C 1.46679 * 119.99852 * 179.97438 * 17 16 15 20 20 C 1.38050 * 126.20451 * 180.02562 * 19 17 16 21 21 C 1.39254 * 106.97891 * 179.97438 * 20 19 17 22 22 C 1.35970 * 108.03312 * 0.04651 * 21 20 19 23 23 N 1.35112 * 108.77020 * 359.91406 * 22 21 20 24 24 H 0.96996 * 125.68944 * 180.02562 * 23 22 21 25 25 C 1.51024 * 123.84682 * 179.82315 * 22 21 20 26 26 C 1.53317 * 108.41012 * 343.34377 * 25 22 21 27 27 C 1.53113 * 109.52455 * 50.18207 * 26 25 22 28 28 C 1.50828 * 127.70663 * 180.31247 * 21 20 19 29 29 H 1.09002 * 109.47261 * 59.99501 * 1 2 3 30 30 H 1.08999 * 109.47737 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47206 * 300.00095 * 1 2 3 32 32 H 1.08999 * 109.47817 * 60.00386 * 3 2 1 33 33 H 1.09003 * 109.47562 * 300.00245 * 3 2 1 34 34 H 1.08996 * 109.46881 * 305.00264 * 4 3 2 35 35 H 1.08995 * 109.47494 * 184.99914 * 4 3 2 36 36 H 0.97001 * 119.99893 * 179.97438 * 9 8 6 37 37 H 1.09006 * 109.46729 * 144.71051 * 14 5 4 38 38 H 1.08995 * 109.46831 * 24.71479 * 14 5 4 39 39 H 1.09000 * 109.47096 * 59.99944 * 15 14 5 40 40 H 1.09004 * 109.46889 * 300.00506 * 15 14 5 41 41 H 0.97000 * 120.00177 * 0.02562 * 16 15 14 42 42 H 1.07996 * 126.51370 * 359.97438 * 20 19 17 43 43 H 1.08999 * 109.67730 * 103.07518 * 25 22 21 44 44 H 1.09000 * 109.67285 * 223.61621 * 25 22 21 45 45 H 1.08998 * 109.46383 * 170.19505 * 26 25 22 46 46 H 1.08998 * 109.46742 * 290.16355 * 26 25 22 47 47 H 1.08996 * 109.47402 * 49.58425 * 27 26 25 48 48 H 1.08999 * 109.47422 * 169.58977 * 27 26 25 49 49 H 1.08996 * 109.68772 * 283.01036 * 28 21 20 50 50 H 1.09004 * 109.68559 * 43.56173 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0966 -0.7972 -1.3369 7 1 3.8065 -1.3102 -2.2419 8 6 4.5923 -1.5179 -0.2590 9 7 5.3197 -0.9149 0.6572 10 14 4.2266 -3.3436 -0.1088 11 1 4.7662 -4.0557 -1.2950 12 1 4.8646 -3.8766 1.1217 13 1 2.7579 -3.5498 -0.0334 14 6 4.2863 1.4005 -2.4148 15 6 3.0583 1.4881 -3.3231 16 7 3.3692 2.3239 -4.4855 17 6 2.4311 2.5433 -5.4279 18 8 1.3256 2.0476 -5.3131 19 6 2.7422 3.3805 -6.5914 20 6 1.8832 3.6887 -7.6273 21 6 2.5867 4.5044 -8.5098 22 6 3.8402 4.6796 -8.0129 23 7 3.9447 4.0028 -6.8483 24 1 4.7347 3.9609 -6.2870 25 6 4.9068 5.5049 -8.6927 26 6 4.4912 5.7263 -10.1518 27 6 3.0496 6.2399 -10.2010 28 6 2.0904 5.1152 -9.7965 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5680 0.8409 35 1 3.9787 2.1763 0.0889 36 1 5.6657 -1.4184 1.4106 37 1 5.1164 0.9604 -2.9676 38 1 4.5625 2.4002 -2.0796 39 1 2.2282 1.9281 -2.7704 40 1 2.7822 0.4883 -3.6583 41 1 4.2505 2.7187 -4.5772 42 1 0.8601 3.3597 -7.7331 43 1 5.0035 6.4666 -8.1887 44 1 5.8585 4.9747 -8.6585 45 1 5.1539 6.4598 -10.6109 46 1 4.5598 4.7843 -10.6959 47 1 2.9379 7.0756 -9.5102 48 1 2.8163 6.5712 -11.2129 49 1 2.0705 4.3569 -10.5792 50 1 1.0881 5.5178 -9.6492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279056372.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:19 Heat of formation + Delta-G solvation = -53.026841 kcal Electronic energy + Delta-G solvation = -28923.321658 eV Core-core repulsion = 24950.401602 eV Total energy + Delta-G solvation = -3972.920056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.60109 -40.37755 -38.93947 -37.45398 -37.14707 -35.78102 -33.42119 -33.11096 -31.34444 -30.26893 -29.79942 -28.79608 -27.18553 -26.03524 -24.84661 -23.52261 -23.05854 -22.27123 -22.14750 -21.06816 -19.44443 -19.41075 -18.65133 -17.49019 -16.98288 -16.91761 -16.62648 -16.54564 -16.42202 -15.89817 -15.66885 -15.41222 -15.14966 -14.92699 -14.78733 -14.63580 -14.52013 -14.19061 -13.96508 -13.67233 -13.48878 -13.43929 -13.25269 -13.04443 -12.71936 -12.64686 -12.51031 -12.42755 -12.37637 -11.97998 -11.75679 -11.63819 -11.57248 -11.53968 -11.33571 -11.31284 -10.48388 -10.42095 -10.18208 -9.80072 -8.91303 -8.56308 -7.81059 -5.41436 0.39842 1.44438 1.49221 1.56562 1.66877 1.97244 2.13387 2.31838 2.56392 3.16698 3.32272 3.68556 3.77466 3.88192 3.99725 4.10395 4.17692 4.19621 4.24464 4.38331 4.40785 4.48359 4.53561 4.55902 4.67263 4.68195 4.70780 4.72838 4.75639 4.78876 4.87105 4.92974 4.99158 5.05748 5.10450 5.14540 5.14783 5.23901 5.32951 5.39394 5.40536 5.55536 5.69300 5.76342 5.84750 5.92389 6.41543 6.44193 6.57435 6.62571 7.10192 7.20816 7.86614 8.36353 9.16733 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.002281 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.584313 B =12269.755955 C =12847.515855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.051 3.949 4 C 0.142 3.858 5 N -0.585 5.585 6 C -0.246 4.246 7 H 0.041 0.959 8 C -0.020 4.020 9 N -0.914 5.914 10 Si 0.945 3.055 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.288 1.288 14 C 0.144 3.856 15 C 0.120 3.880 16 N -0.710 5.710 17 C 0.583 3.417 18 O -0.583 6.583 19 C -0.077 4.077 20 C -0.116 4.116 21 C -0.193 4.193 22 C 0.065 3.935 23 N -0.518 5.518 24 H 0.428 0.572 25 C -0.053 4.053 26 C -0.112 4.112 27 C -0.117 4.117 28 C -0.048 4.048 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.250 0.750 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.033 0.967 41 H 0.409 0.591 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.070 0.930 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 18.204 -18.664 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.028 4.028 4 C 0.016 3.984 5 N -0.305 5.305 6 C -0.377 4.377 7 H 0.058 0.942 8 C -0.217 4.217 9 N -0.558 5.558 10 Si 0.774 3.226 11 H -0.204 1.204 12 H -0.217 1.217 13 H -0.214 1.214 14 C 0.017 3.983 15 C -0.007 4.007 16 N -0.362 5.362 17 C 0.372 3.628 18 O -0.464 6.464 19 C -0.189 4.189 20 C -0.143 4.143 21 C -0.198 4.198 22 C -0.055 4.055 23 N -0.115 5.115 24 H 0.268 0.732 25 C -0.091 4.091 26 C -0.150 4.150 27 C -0.154 4.154 28 C -0.086 4.086 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.245 0.755 42 H 0.152 0.848 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.100 0.900 49 H 0.089 0.911 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.689 17.554 -18.236 25.321 hybrid contribution -0.177 -1.184 0.887 1.490 sum -0.866 16.370 -17.349 23.869 Atomic orbital electron populations 1.22799 0.81791 1.02551 0.99853 1.88131 1.19381 1.28785 1.95154 1.23356 0.97164 0.83986 0.98295 1.21031 0.89297 0.96693 0.91410 1.43652 1.76043 1.02427 1.08417 1.18798 1.35200 0.83115 1.00573 0.94182 1.25556 0.96481 1.00632 0.99063 1.70058 1.34674 1.36858 1.14210 0.85710 0.77682 0.82328 0.76841 1.20362 1.21684 1.21442 1.21018 0.93180 0.95389 0.88688 1.21961 1.00280 0.92771 0.85671 1.45725 1.15721 1.51924 1.22782 1.17441 0.84143 0.79634 0.81588 1.90803 1.24157 1.53023 1.78386 1.20049 0.89233 1.09321 1.00323 1.21154 0.99273 1.00201 0.93663 1.19596 0.94090 1.05677 1.00485 1.21085 0.97928 0.98922 0.87532 1.41671 1.11882 1.38286 1.19648 0.73196 1.20519 0.94490 0.98447 0.95639 1.21549 0.96822 1.02276 0.94343 1.21583 0.94372 0.97246 1.02247 1.20110 0.99067 0.97474 0.91946 0.94681 0.90008 0.93095 0.93262 0.94809 0.91403 0.91978 0.94035 0.93143 0.91346 0.93416 0.94812 0.75538 0.84820 0.88571 0.88907 0.88948 0.91822 0.91765 0.90031 0.91127 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.18 16 2 O -0.40 -18.01 10.18 -148.98 -1.52 -19.53 16 3 C 0.05 2.05 6.28 71.98 0.45 2.51 16 4 C 0.14 6.46 5.76 86.38 0.50 6.96 16 5 N -0.59 -28.17 2.41 -702.00 -1.69 -29.86 16 6 C -0.25 -13.58 8.95 84.03 0.75 -12.82 16 7 H 0.04 2.30 7.91 -2.91 -0.02 2.28 16 8 C -0.02 -1.11 4.95 84.86 0.42 -0.69 16 9 N -0.91 -52.84 11.53 21.65 0.25 -52.59 16 10 Si 0.95 46.56 29.60 68.60 2.03 48.59 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 13 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 14 C 0.14 5.53 5.83 86.38 0.50 6.03 16 15 C 0.12 4.49 5.97 86.38 0.52 5.01 16 16 N -0.71 -21.10 5.55 -467.08 -2.59 -23.70 16 17 C 0.58 19.64 7.79 86.45 0.67 20.31 16 18 O -0.58 -25.13 16.88 -4.32 -0.07 -25.20 16 19 C -0.08 -2.07 7.06 40.36 0.29 -1.79 16 20 C -0.12 -3.10 10.62 22.47 0.24 -2.86 16 21 C -0.19 -3.96 5.91 -20.11 -0.12 -4.07 16 22 C 0.07 1.09 7.02 41.63 0.29 1.39 16 23 N -0.52 -9.52 5.98 -171.29 -1.02 -10.54 16 24 H 0.43 5.20 8.19 -92.71 -0.76 4.44 16 25 C -0.05 -0.48 6.30 30.06 0.19 -0.29 16 26 C -0.11 -0.87 5.89 30.74 0.18 -0.69 16 27 C -0.12 -1.12 5.90 30.72 0.18 -0.94 16 28 C -0.05 -0.71 6.27 29.98 0.19 -0.53 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 30 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.03 1.33 6.48 -2.39 -0.02 1.31 16 34 H 0.07 3.63 5.58 -2.39 -0.01 3.62 16 35 H 0.06 2.49 7.86 -2.39 -0.02 2.47 16 36 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.05 1.95 8.08 -2.38 -0.02 1.93 16 38 H 0.07 2.24 7.83 -2.39 -0.02 2.22 16 39 H 0.05 1.93 6.48 -2.39 -0.02 1.91 16 40 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.41 8.82 7.60 -92.71 -0.70 8.12 16 42 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 43 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.09 0.58 8.14 -2.39 -0.02 0.57 16 45 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.06 0.58 8.11 -2.39 -0.02 0.57 16 47 H 0.06 0.63 8.11 -2.39 -0.02 0.61 16 48 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -75.09 403.13 1.37 -73.72 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -0.51 Total: 19.41 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 6.50 Total: 19.69 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -5.06 Total: -116.69 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -1.59 Total: -44.73 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -75.09 1.37 -73.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279056372.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.696 kcal (2) G-P(sol) polarization free energy of solvation -75.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds