Wall clock time and date at job start Tue Mar 31 2020 18:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99965 * 2 1 4 4 C 1.50696 * 109.46978 * 293.95448 * 3 2 1 5 5 O 1.21295 * 120.00238 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00076 * 180.02562 * 4 3 2 7 7 C 1.37105 * 120.00244 * 180.02562 * 6 4 3 8 8 H 1.07998 * 119.99708 * 359.97438 * 7 6 4 9 9 C 1.38945 * 120.00017 * 179.97438 * 7 6 4 10 10 N 1.31413 * 119.99901 * 359.71836 * 9 7 6 11 11 Si 1.86800 * 120.00194 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47364 * 179.72210 * 11 9 7 13 13 H 1.48508 * 109.46883 * 299.72333 * 11 9 7 14 14 H 1.48497 * 109.46870 * 59.72143 * 11 9 7 15 15 C 1.46894 * 110.99860 * 123.95558 * 2 1 3 16 16 C 1.53004 * 109.47468 * 66.04453 * 15 2 1 17 17 H 1.09003 * 109.86983 * 294.29550 * 16 15 2 18 18 C 1.54323 * 109.88420 * 173.28410 * 16 15 2 19 19 C 1.55403 * 102.82527 * 218.48382 * 18 16 15 20 20 C 1.54907 * 101.67008 * 35.33617 * 19 18 16 21 21 N 1.47019 * 109.87803 * 55.31258 * 16 15 2 22 22 C 1.34772 * 125.65323 * 298.39414 * 21 16 15 23 23 O 1.21284 * 119.99620 * 359.97438 * 22 21 16 24 24 C 1.50696 * 120.00124 * 180.02562 * 22 21 16 25 25 C 1.54635 * 111.03551 * 295.32713 * 24 22 21 26 26 C 1.51160 * 104.69489 * 217.36210 * 25 24 22 27 27 C 1.30522 * 111.12409 * 16.38816 * 26 25 24 28 28 C 1.51106 * 111.10336 * 0.02952 * 27 26 25 29 29 H 1.09005 * 109.47464 * 59.99891 * 1 2 3 30 30 H 1.08998 * 109.47370 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46911 * 300.00244 * 1 2 3 32 32 H 1.08999 * 109.46697 * 173.95887 * 3 2 1 33 33 H 1.08993 * 109.47253 * 53.95538 * 3 2 1 34 34 H 0.97004 * 119.99652 * 359.97438 * 6 4 3 35 35 H 0.97000 * 120.00371 * 0.28325 * 10 9 7 36 36 H 1.09004 * 109.46916 * 186.04690 * 15 2 1 37 37 H 1.09002 * 109.47248 * 306.04527 * 15 2 1 38 38 H 1.09002 * 110.71820 * 336.75077 * 18 16 15 39 39 H 1.08994 * 110.72064 * 100.02522 * 18 16 15 40 40 H 1.08997 * 110.88940 * 277.25928 * 19 18 16 41 41 H 1.09000 * 111.07090 * 153.48717 * 19 18 16 42 42 H 1.08995 * 110.37028 * 204.23869 * 20 19 18 43 43 H 1.09003 * 110.45681 * 81.95574 * 20 19 18 44 44 H 1.08994 * 110.91611 * 59.30016 * 24 22 21 45 45 H 1.08994 * 110.39030 * 336.15295 * 25 24 22 46 46 H 1.09004 * 110.38422 * 98.52444 * 25 24 22 47 47 H 1.08003 * 124.43241 * 196.42917 * 26 25 24 48 48 H 1.08006 * 124.45291 * 180.02562 * 27 26 25 49 49 H 1.09001 * 110.38861 * 224.76042 * 28 27 26 50 50 H 1.08998 * 110.48253 * 102.42107 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0054 1.4452 -2.1411 6 7 2.0188 3.3198 -1.5237 7 6 1.6922 3.9347 -2.7048 8 1 1.1292 3.3991 -3.4548 9 6 2.0855 5.2470 -2.9368 10 7 2.7658 5.9006 -2.0220 11 14 1.6411 6.0846 -4.5463 12 1 2.1675 7.4732 -4.5436 13 1 2.2385 5.3310 -5.6779 14 1 0.1641 6.1154 -4.6969 15 6 1.9954 -0.7660 1.1375 16 6 1.6314 -2.2427 0.9703 17 1 0.5503 -2.3671 1.0328 18 6 2.3204 -3.0806 2.0679 19 6 2.7305 -4.3731 1.3087 20 6 3.0919 -3.8136 -0.0899 21 7 2.1171 -2.7334 -0.3276 22 6 1.7352 -2.2719 -1.5349 23 8 0.9223 -1.3750 -1.6117 24 6 2.3171 -2.8709 -2.7892 25 6 3.8370 -2.6009 -2.8798 26 6 4.0952 -2.3507 -4.3480 27 6 2.9842 -2.0975 -4.9845 28 6 1.7994 -2.1357 -4.0474 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.0797 1.3443 0.1082 33 1 1.5612 1.9273 0.8309 34 1 2.5242 3.8010 -0.8499 35 1 2.9969 5.4656 -1.1863 36 1 3.0797 -0.6611 1.1756 37 1 1.5610 -0.3873 2.0628 38 1 3.1999 -2.5641 2.4523 39 1 1.6229 -3.3088 2.8738 40 1 1.8943 -5.0694 1.2468 41 1 3.5950 -4.8445 1.7762 42 1 2.9895 -4.5905 -0.8474 43 1 4.1067 -3.4156 -0.0904 44 1 2.1053 -3.9386 -2.8451 45 1 4.1022 -1.7218 -2.2926 46 1 4.3982 -3.4705 -2.5377 47 1 5.0711 -2.3785 -4.8099 48 1 2.9200 -1.8880 -6.0421 49 1 0.9760 -2.6893 -4.4986 50 1 1.4819 -1.1246 -3.7926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281927754.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:28 Heat of formation + Delta-G solvation = -30.041754 kcal Electronic energy + Delta-G solvation = -31268.321329 eV Core-core repulsion = 27296.397981 eV Total energy + Delta-G solvation = -3971.923348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.42729 -40.31867 -39.31829 -37.62611 -37.39473 -36.08702 -33.09675 -32.62978 -31.41414 -30.06332 -29.19384 -28.99624 -27.29062 -26.22222 -24.76987 -23.23474 -22.27719 -21.38023 -21.20564 -19.88819 -19.70244 -19.41750 -18.18328 -18.07657 -17.31577 -16.89385 -16.86168 -16.51961 -16.30185 -15.85795 -15.45048 -15.15871 -14.93592 -14.74089 -14.27720 -14.19470 -14.04106 -13.71129 -13.42282 -13.39369 -13.30375 -13.03949 -12.99888 -12.84857 -12.67034 -12.46529 -12.45568 -12.26163 -12.13821 -11.97960 -11.95611 -11.93646 -11.85220 -11.84010 -11.49625 -11.42012 -10.21459 -10.07490 -10.03880 -9.80121 -9.43570 -8.90787 -8.72855 -6.02219 1.35896 1.50692 1.52454 1.79769 2.08688 2.08842 2.29283 2.40733 2.79649 3.18441 3.35952 3.54966 3.67024 3.76014 3.83815 3.90455 4.08127 4.14931 4.20844 4.27978 4.33291 4.34810 4.37922 4.40604 4.49772 4.63349 4.65243 4.66173 4.69575 4.75010 4.79953 4.84253 4.91246 4.98394 5.02616 5.08813 5.15490 5.19321 5.29873 5.35268 5.42654 5.60649 5.61844 5.73950 5.97819 5.98980 6.10931 6.38215 6.63628 6.83898 6.91273 7.50291 7.76923 8.04600 8.57459 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.003887 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.340561 B = 7200.918339 C = 8673.061055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.496 5.496 3 C 0.054 3.946 4 C 0.446 3.554 5 O -0.581 6.581 6 N -0.598 5.598 7 C -0.402 4.402 8 H 0.067 0.933 9 C -0.045 4.045 10 N -0.921 5.921 11 Si 1.132 2.868 12 H -0.270 1.270 13 H -0.274 1.274 14 H -0.275 1.275 15 C 0.041 3.959 16 C 0.141 3.859 17 H 0.054 0.946 18 C -0.117 4.117 19 C -0.121 4.121 20 C 0.094 3.906 21 N -0.615 5.615 22 C 0.510 3.490 23 O -0.497 6.497 24 C -0.099 4.099 25 C -0.075 4.075 26 C -0.170 4.170 27 C -0.176 4.176 28 C -0.090 4.090 29 H 0.041 0.959 30 H 0.066 0.934 31 H -0.004 1.004 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.380 0.620 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.052 0.948 46 H 0.106 0.894 47 H 0.145 0.855 48 H 0.131 0.869 49 H 0.071 0.929 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.041 -24.610 8.610 26.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.220 5.220 3 C -0.077 4.077 4 C 0.233 3.767 5 O -0.463 6.463 6 N -0.239 5.239 7 C -0.531 4.531 8 H 0.085 0.915 9 C -0.243 4.243 10 N -0.561 5.561 11 Si 0.952 3.048 12 H -0.194 1.194 13 H -0.200 1.200 14 H -0.200 1.200 15 C -0.087 4.087 16 C 0.037 3.963 17 H 0.073 0.927 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.028 4.028 21 N -0.352 5.352 22 C 0.297 3.703 23 O -0.368 6.368 24 C -0.120 4.120 25 C -0.113 4.113 26 C -0.188 4.188 27 C -0.194 4.194 28 C -0.128 4.128 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.014 0.986 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.213 0.787 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.138 0.862 45 H 0.070 0.930 46 H 0.124 0.876 47 H 0.163 0.837 48 H 0.149 0.851 49 H 0.090 0.910 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.399 -23.310 6.612 24.626 hybrid contribution -0.388 -0.131 1.729 1.776 sum 4.011 -23.441 8.341 25.202 Atomic orbital electron populations 1.21929 0.87196 1.00512 0.97384 1.61953 1.08498 1.09870 1.41660 1.21751 1.01127 0.91247 0.93592 1.20768 0.83522 0.81825 0.90571 1.90548 1.43084 1.64502 1.48215 1.42019 1.51850 1.12407 1.17603 1.20435 1.37158 0.99302 0.96193 0.91457 1.27770 0.94928 0.93745 1.07824 1.70963 1.38248 1.39175 1.07757 0.82654 0.76795 0.75487 0.69823 1.19442 1.19962 1.20047 1.22779 1.00319 0.94345 0.91298 1.21633 0.98168 0.92048 0.84453 0.92748 1.22696 1.01301 0.95568 0.95994 1.22795 1.03045 0.96496 0.93556 1.22524 0.92416 0.89183 0.98677 1.48375 1.44647 1.38057 1.04130 1.20280 0.83223 0.82589 0.84184 1.90965 1.33279 1.27059 1.85531 1.22051 0.96818 1.01161 0.92009 1.21242 0.93360 1.01979 0.94672 1.23478 0.98847 1.00892 0.95563 1.23413 0.95266 1.01003 0.99721 1.21217 0.97454 1.00411 0.93721 0.93971 0.91571 0.98603 0.88571 0.92964 0.78684 0.93266 0.90444 0.93693 0.89513 0.88727 0.90423 0.87505 0.89672 0.91175 0.86243 0.92955 0.87586 0.83717 0.85139 0.91045 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.06 6.92 127.69 0.88 3.94 16 2 N -0.50 -18.14 1.90 -927.05 -1.76 -19.90 16 3 C 0.05 2.16 5.45 85.56 0.47 2.63 16 4 C 0.45 23.46 7.51 87.66 0.66 24.12 16 5 O -0.58 -35.13 13.14 1.88 0.02 -35.10 16 6 N -0.60 -33.09 5.28 -306.98 -1.62 -34.71 16 7 C -0.40 -24.56 9.68 84.04 0.81 -23.75 16 8 H 0.07 4.44 7.16 -2.91 -0.02 4.42 16 9 C -0.05 -2.62 5.50 84.92 0.47 -2.15 16 10 N -0.92 -54.25 13.68 21.66 0.30 -53.96 16 11 Si 1.13 51.66 29.92 68.60 2.05 53.71 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 C 0.04 1.06 4.57 86.31 0.39 1.45 16 16 C 0.14 2.99 2.88 45.34 0.13 3.12 16 17 H 0.05 1.33 6.77 -2.39 -0.02 1.31 16 18 C -0.12 -1.35 6.50 31.87 0.21 -1.14 16 19 C -0.12 -1.03 7.09 32.07 0.23 -0.81 16 20 C 0.09 1.25 5.71 86.85 0.50 1.74 16 21 N -0.62 -14.03 3.06 -788.05 -2.42 -16.44 16 22 C 0.51 15.88 6.66 87.66 0.58 16.46 16 23 O -0.50 -20.56 8.71 1.92 0.02 -20.54 16 24 C -0.10 -2.59 2.78 -10.42 -0.03 -2.62 16 25 C -0.08 -1.75 5.53 30.55 0.17 -1.58 16 26 C -0.17 -4.14 10.78 26.28 0.28 -3.86 16 27 C -0.18 -4.96 10.77 26.27 0.28 -4.68 16 28 C -0.09 -2.94 6.16 30.54 0.19 -2.76 16 29 H 0.04 2.10 5.77 -2.38 -0.01 2.08 16 30 H 0.07 2.47 5.42 -2.39 -0.01 2.46 16 31 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.10 3.44 7.93 -2.39 -0.02 3.42 16 33 H 0.05 1.92 8.12 -2.39 -0.02 1.90 16 34 H 0.38 19.50 6.73 -92.71 -0.62 18.88 16 35 H 0.26 14.72 6.78 -92.71 -0.63 14.10 16 36 H 0.08 1.87 7.82 -2.38 -0.02 1.85 16 37 H 0.05 1.05 8.12 -2.39 -0.02 1.03 16 38 H 0.09 0.87 7.78 -2.39 -0.02 0.86 16 39 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 0.91 7.49 -2.39 -0.02 0.89 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.12 2.38 7.86 -2.39 -0.02 2.36 16 45 H 0.05 1.52 7.88 -2.39 -0.02 1.50 16 46 H 0.11 1.64 7.88 -2.38 -0.02 1.62 16 47 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 48 H 0.13 3.33 8.06 -2.91 -0.02 3.30 16 49 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.05 2.28 7.00 -2.39 -0.02 2.27 16 Total: -1.00 -82.01 382.99 3.27 -78.74 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: 0.46 Total: 38.07 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 6.22 Total: 10.13 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -5.50 Total: -125.01 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: 0.04 Total: -55.65 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.05 Total: 53.71 kcal Total: -82.01 3.27 -78.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281927754.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.699 kcal (2) G-P(sol) polarization free energy of solvation -82.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds