Wall clock time and date at job start Tue Mar 31 2020 18:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00532 * 2 1 4 4 C 1.50698 * 109.46987 * 66.04197 * 3 2 1 5 5 O 1.21293 * 120.00006 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99538 * 179.97438 * 4 3 2 7 7 C 1.37104 * 119.99773 * 179.72591 * 6 4 3 8 8 H 1.08002 * 119.99671 * 0.27660 * 7 6 4 9 9 C 1.38950 * 120.00030 * 180.27703 * 7 6 4 10 10 N 1.31413 * 119.99930 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99918 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47112 * 89.99702 * 11 9 7 13 13 H 1.48498 * 109.47011 * 209.99970 * 11 9 7 14 14 H 1.48494 * 109.47201 * 329.99943 * 11 9 7 15 15 C 1.46903 * 110.99893 * 236.03918 * 2 1 3 16 16 C 1.52998 * 109.47282 * 293.96232 * 15 2 1 17 17 H 1.08988 * 109.87563 * 65.69719 * 16 15 2 18 18 C 1.54324 * 109.88131 * 186.71470 * 16 15 2 19 19 C 1.55403 * 102.83046 * 141.51425 * 18 16 15 20 20 C 1.54917 * 101.66378 * 324.66071 * 19 18 16 21 21 N 1.47030 * 109.87992 * 304.67998 * 16 15 2 22 22 C 1.34769 * 125.64726 * 61.68365 * 21 16 15 23 23 O 1.21280 * 119.99939 * 359.97438 * 22 21 16 24 24 C 1.50699 * 120.00160 * 179.97438 * 22 21 16 25 25 C 1.54638 * 111.03648 * 292.02389 * 24 22 21 26 26 C 1.51102 * 104.72500 * 217.33334 * 25 24 22 27 27 C 1.30524 * 111.10271 * 16.43109 * 26 25 24 28 28 C 1.51104 * 111.10611 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46586 * 60.00128 * 1 2 3 30 30 H 1.08997 * 109.47601 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46729 * 300.00335 * 1 2 3 32 32 H 1.09003 * 109.46477 * 306.04687 * 3 2 1 33 33 H 1.08993 * 109.47002 * 186.05013 * 3 2 1 34 34 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 35 35 H 0.96999 * 119.99993 * 179.97438 * 10 9 7 36 36 H 1.09007 * 109.46705 * 53.96039 * 15 2 1 37 37 H 1.09000 * 109.47150 * 173.95706 * 15 2 1 38 38 H 1.08997 * 110.72241 * 259.97336 * 18 16 15 39 39 H 1.09001 * 110.71888 * 23.24638 * 18 16 15 40 40 H 1.08998 * 111.03858 * 206.52898 * 19 18 16 41 41 H 1.08994 * 110.92158 * 82.74562 * 19 18 16 42 42 H 1.08994 * 110.36728 * 278.08554 * 20 19 18 43 43 H 1.09005 * 110.36295 * 155.75724 * 20 19 18 44 44 H 1.09000 * 110.91233 * 56.02838 * 24 22 21 45 45 H 1.09006 * 110.38227 * 336.14306 * 25 24 22 46 46 H 1.08997 * 110.39135 * 98.51823 * 25 24 22 47 47 H 1.07998 * 124.44458 * 196.45632 * 26 25 24 48 48 H 1.08005 * 124.44819 * 179.97438 * 27 26 25 49 49 H 1.09004 * 110.38129 * 224.74611 * 28 27 26 50 50 H 1.09004 * 110.48629 * 102.42435 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6371 2.0471 1.2984 5 8 1.0054 1.4453 2.1411 6 7 2.0192 3.3198 1.5236 7 6 1.6881 3.9365 2.7025 8 1 1.1251 3.4009 3.4525 9 6 2.0771 5.2505 2.9324 10 7 1.7594 5.8417 4.0622 11 14 3.0504 6.1770 1.6348 12 1 2.1137 6.8761 0.7188 13 1 3.9327 7.1725 2.2949 14 1 3.8784 5.2190 0.8592 15 6 1.9955 -0.7661 -1.1375 16 6 1.6313 -2.2427 -0.9702 17 1 0.5504 -2.3671 -1.0326 18 6 2.3203 -3.0808 -2.0678 19 6 2.7304 -4.3732 -1.3086 20 6 3.0919 -3.8136 0.0900 21 7 2.1171 -2.7335 0.3278 22 6 1.7341 -2.2728 1.5350 23 8 0.9210 -1.3763 1.6118 24 6 2.3161 -2.8717 2.7894 25 6 1.8392 -4.3301 2.9813 26 6 1.6408 -4.4764 4.4721 27 6 1.5841 -3.3100 5.0552 28 6 1.7346 -2.1915 4.0506 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.5612 1.9272 -0.8310 33 1 3.0798 1.3442 -0.1083 34 1 2.5246 3.8010 0.8499 35 1 2.0312 6.7589 4.2228 36 1 1.5611 -0.3874 -2.0628 37 1 3.0798 -0.6613 -1.1756 38 1 1.6228 -3.3089 -2.8737 39 1 3.1999 -2.5643 -2.4522 40 1 3.5950 -4.8441 -1.7764 41 1 1.8946 -5.0700 -1.2465 42 1 4.1065 -3.4154 0.0886 43 1 2.9893 -4.5906 0.8476 44 1 3.4045 -2.8134 2.7796 45 1 0.8988 -4.4944 2.4551 46 1 2.5992 -5.0276 2.6291 47 1 1.5573 -5.4218 4.9874 48 1 1.4467 -3.1636 6.1165 49 1 2.4238 -1.4347 4.4254 50 1 0.7653 -1.7447 3.8290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281927755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:33 Heat of formation + Delta-G solvation = -0.676029 kcal Electronic energy + Delta-G solvation = -31003.536031 eV Core-core repulsion = 27032.886076 eV Total energy + Delta-G solvation = -3970.649954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.39103 -38.65376 -38.13270 -36.53634 -35.87702 -33.69354 -31.71554 -31.50052 -30.47617 -29.06519 -28.02787 -27.68908 -26.08243 -24.53857 -23.55653 -21.95706 -21.37001 -20.29742 -19.13007 -18.82567 -18.39355 -18.08589 -16.99229 -16.57830 -16.06892 -15.85690 -15.08928 -14.94659 -14.68488 -14.44369 -14.21160 -13.80484 -13.68540 -13.33694 -13.10865 -12.91708 -12.64796 -12.58978 -12.39105 -12.18677 -12.07603 -11.87702 -11.82677 -11.53657 -11.39857 -11.32485 -11.26205 -11.15938 -11.06813 -11.02575 -10.89753 -10.73738 -10.66203 -10.49207 -9.85204 -9.36440 -8.89594 -8.77121 -8.50507 -8.12591 -7.99838 -7.40247 -6.18088 -3.67766 2.31384 3.11050 3.14664 3.15269 3.22030 3.30747 3.96866 4.10672 4.21371 4.35002 4.51248 4.63236 4.69208 4.76112 4.96973 5.01230 5.07295 5.18281 5.23690 5.33731 5.35222 5.37184 5.43885 5.51573 5.55080 5.58999 5.65955 5.67746 5.72572 5.77967 5.85011 5.88485 5.90692 5.98403 6.07641 6.12076 6.17447 6.24260 6.28580 6.41553 6.57613 6.69426 6.95283 6.98955 7.49455 7.71986 7.75494 7.92490 8.30964 8.77442 8.87857 9.12002 9.58838 10.05560 10.95816 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.003743 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.693053 B = 7479.553490 C = 9128.801558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.486 5.486 3 C 0.040 3.960 4 C 0.457 3.543 5 O -0.535 6.535 6 N -0.602 5.602 7 C -0.296 4.296 8 H 0.118 0.882 9 C 0.038 3.962 10 N -0.888 5.888 11 Si 0.878 3.122 12 H -0.273 1.273 13 H -0.278 1.278 14 H -0.271 1.271 15 C 0.042 3.958 16 C 0.146 3.854 17 H 0.070 0.930 18 C -0.127 4.127 19 C -0.132 4.132 20 C 0.098 3.902 21 N -0.616 5.616 22 C 0.521 3.479 23 O -0.442 6.442 24 C -0.105 4.105 25 C -0.083 4.083 26 C -0.187 4.187 27 C -0.148 4.148 28 C -0.087 4.087 29 H -0.012 1.012 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.367 0.633 35 H 0.271 0.729 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.075 0.925 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.373 -22.841 -11.875 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.210 5.210 3 C -0.092 4.092 4 C 0.242 3.758 5 O -0.414 6.414 6 N -0.244 5.244 7 C -0.425 4.425 8 H 0.136 0.864 9 C -0.164 4.164 10 N -0.530 5.530 11 Si 0.705 3.295 12 H -0.199 1.199 13 H -0.204 1.204 14 H -0.196 1.196 15 C -0.088 4.088 16 C 0.041 3.959 17 H 0.088 0.912 18 C -0.166 4.166 19 C -0.170 4.170 20 C -0.026 4.026 21 N -0.355 5.355 22 C 0.307 3.693 23 O -0.309 6.309 24 C -0.127 4.127 25 C -0.120 4.120 26 C -0.205 4.205 27 C -0.166 4.166 28 C -0.124 4.124 29 H 0.006 0.994 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.199 0.801 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.094 0.906 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.578 -22.729 -10.551 25.313 hybrid contribution 0.867 1.330 -1.746 2.359 sum 4.445 -21.399 -12.297 25.077 Atomic orbital electron populations 1.22298 0.86163 1.00933 0.99744 1.62024 1.09284 1.10771 1.38874 1.21932 1.00110 0.90461 0.96711 1.19691 0.84821 0.82246 0.89086 1.90587 1.41135 1.63507 1.46160 1.42247 1.51823 1.12209 1.18077 1.19412 1.33041 0.95898 0.94123 0.86400 1.24995 0.98173 0.96517 0.96688 1.69626 1.46569 1.13331 1.23444 0.86691 0.80499 0.80472 0.81816 1.19870 1.20389 1.19647 1.22637 1.00029 0.93623 0.92510 1.21502 0.98402 0.92696 0.83264 0.91199 1.22705 1.00980 0.95806 0.97071 1.22787 1.01827 0.97158 0.95209 1.22298 0.93031 0.90211 0.97032 1.48324 1.44667 1.37700 1.04830 1.19845 0.83777 0.82991 0.82671 1.90969 1.30784 1.24658 1.84538 1.22058 1.00977 0.95639 0.93987 1.21282 1.01024 0.94953 0.94749 1.23127 1.03885 0.98023 0.95496 1.23443 0.98648 0.95188 0.99332 1.21289 1.03560 0.96493 0.91092 0.99355 0.92189 0.88809 0.94297 0.90284 0.80083 0.91883 0.95033 0.91281 0.90324 0.90542 0.90210 0.90789 0.92100 0.90683 0.88985 0.90813 0.91200 0.86107 0.85874 0.90625 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 6.92 60.07 0.42 1.44 16 2 N -0.49 -8.47 1.90 -244.37 -0.46 -8.94 16 3 C 0.04 0.74 5.45 -4.98 -0.03 0.71 16 4 C 0.46 11.02 7.51 -10.99 -0.08 10.93 16 5 O -0.53 -14.83 13.15 0.49 0.01 -14.82 16 6 N -0.60 -15.15 5.09 -10.96 -0.06 -15.21 16 7 C -0.30 -8.69 10.16 -14.93 -0.15 -8.85 16 8 H 0.12 3.95 7.39 -52.49 -0.39 3.56 16 9 C 0.04 1.08 5.50 -17.47 -0.10 0.98 16 10 N -0.89 -26.87 13.96 55.50 0.77 -26.09 16 11 Si 0.88 20.29 27.74 -169.99 -4.71 15.58 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.27 -5.76 6.52 56.52 0.37 -5.39 16 15 C 0.04 0.54 4.57 -3.82 -0.02 0.53 16 16 C 0.15 1.62 2.88 -66.95 -0.19 1.43 16 17 H 0.07 0.86 6.77 -51.94 -0.35 0.51 16 18 C -0.13 -0.93 6.50 -24.76 -0.16 -1.09 16 19 C -0.13 -0.83 7.09 -24.44 -0.17 -1.00 16 20 C 0.10 0.81 6.65 -2.52 -0.02 0.79 16 21 N -0.62 -7.35 3.06 -163.01 -0.50 -7.85 16 22 C 0.52 7.90 6.65 -10.99 -0.07 7.82 16 23 O -0.44 -8.50 8.69 0.50 0.00 -8.49 16 24 C -0.11 -1.38 2.88 -90.05 -0.26 -1.64 16 25 C -0.08 -0.87 5.35 -26.82 -0.14 -1.01 16 26 C -0.19 -2.01 10.78 -35.70 -0.38 -2.40 16 27 C -0.15 -1.84 10.77 -35.70 -0.38 -2.22 16 28 C -0.09 -1.33 6.18 -26.82 -0.17 -1.49 16 29 H -0.01 -0.20 8.14 -51.93 -0.42 -0.62 16 30 H 0.06 1.04 5.42 -51.93 -0.28 0.76 16 31 H 0.09 2.12 5.77 -51.93 -0.30 1.82 16 32 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.08 1.33 7.93 -51.93 -0.41 0.92 16 34 H 0.37 8.24 5.76 -40.82 -0.24 8.00 16 35 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 37 H 0.07 0.87 7.82 -51.93 -0.41 0.46 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.53 7.78 -51.93 -0.40 0.12 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.55 5.45 -51.93 -0.28 0.26 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 46 H 0.07 0.58 6.80 -51.93 -0.35 0.22 16 47 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 49 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 50 H 0.10 1.85 6.96 -51.93 -0.36 1.49 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -34.65 379.54 -9.15 -43.80 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -8.00 Total: 11.38 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.91 Total: 4.93 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.25 Total: -58.08 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: 0.01 Total: -23.32 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.71 Total: 15.58 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.65 -9.15 -43.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281927755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.119 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds