Wall clock time and date at job start Tue Mar 31 2020 18:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00532 * 2 1 4 4 C 1.50698 * 109.46987 * 66.04197 * 3 2 1 5 5 O 1.21293 * 120.00006 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99538 * 179.97438 * 4 3 2 7 7 C 1.37104 * 119.99773 * 179.72591 * 6 4 3 8 8 H 1.08002 * 119.99671 * 0.27660 * 7 6 4 9 9 C 1.38950 * 120.00030 * 180.27703 * 7 6 4 10 10 N 1.31413 * 119.99930 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99918 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47112 * 89.99702 * 11 9 7 13 13 H 1.48498 * 109.47011 * 209.99970 * 11 9 7 14 14 H 1.48494 * 109.47201 * 329.99943 * 11 9 7 15 15 C 1.46903 * 110.99893 * 236.03918 * 2 1 3 16 16 C 1.52998 * 109.47282 * 293.96232 * 15 2 1 17 17 H 1.08988 * 109.87563 * 65.69719 * 16 15 2 18 18 C 1.54324 * 109.88131 * 186.71470 * 16 15 2 19 19 C 1.55403 * 102.83046 * 141.51425 * 18 16 15 20 20 C 1.54917 * 101.66378 * 324.66071 * 19 18 16 21 21 N 1.47030 * 109.87992 * 304.67998 * 16 15 2 22 22 C 1.34769 * 125.64726 * 61.68365 * 21 16 15 23 23 O 1.21280 * 119.99939 * 359.97438 * 22 21 16 24 24 C 1.50699 * 120.00160 * 179.97438 * 22 21 16 25 25 C 1.54638 * 111.03648 * 292.02389 * 24 22 21 26 26 C 1.51102 * 104.72500 * 217.33334 * 25 24 22 27 27 C 1.30524 * 111.10271 * 16.43109 * 26 25 24 28 28 C 1.51104 * 111.10611 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46586 * 60.00128 * 1 2 3 30 30 H 1.08997 * 109.47601 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46729 * 300.00335 * 1 2 3 32 32 H 1.09003 * 109.46477 * 306.04687 * 3 2 1 33 33 H 1.08993 * 109.47002 * 186.05013 * 3 2 1 34 34 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 35 35 H 0.96999 * 119.99993 * 179.97438 * 10 9 7 36 36 H 1.09007 * 109.46705 * 53.96039 * 15 2 1 37 37 H 1.09000 * 109.47150 * 173.95706 * 15 2 1 38 38 H 1.08997 * 110.72241 * 259.97336 * 18 16 15 39 39 H 1.09001 * 110.71888 * 23.24638 * 18 16 15 40 40 H 1.08998 * 111.03858 * 206.52898 * 19 18 16 41 41 H 1.08994 * 110.92158 * 82.74562 * 19 18 16 42 42 H 1.08994 * 110.36728 * 278.08554 * 20 19 18 43 43 H 1.09005 * 110.36295 * 155.75724 * 20 19 18 44 44 H 1.09000 * 110.91233 * 56.02838 * 24 22 21 45 45 H 1.09006 * 110.38227 * 336.14306 * 25 24 22 46 46 H 1.08997 * 110.39135 * 98.51823 * 25 24 22 47 47 H 1.07998 * 124.44458 * 196.45632 * 26 25 24 48 48 H 1.08005 * 124.44819 * 179.97438 * 27 26 25 49 49 H 1.09004 * 110.38129 * 224.74611 * 28 27 26 50 50 H 1.09004 * 110.48629 * 102.42435 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6371 2.0471 1.2984 5 8 1.0054 1.4453 2.1411 6 7 2.0192 3.3198 1.5236 7 6 1.6881 3.9365 2.7025 8 1 1.1251 3.4009 3.4525 9 6 2.0771 5.2505 2.9324 10 7 1.7594 5.8417 4.0622 11 14 3.0504 6.1770 1.6348 12 1 2.1137 6.8761 0.7188 13 1 3.9327 7.1725 2.2949 14 1 3.8784 5.2190 0.8592 15 6 1.9955 -0.7661 -1.1375 16 6 1.6313 -2.2427 -0.9702 17 1 0.5504 -2.3671 -1.0326 18 6 2.3203 -3.0808 -2.0678 19 6 2.7304 -4.3732 -1.3086 20 6 3.0919 -3.8136 0.0900 21 7 2.1171 -2.7335 0.3278 22 6 1.7341 -2.2728 1.5350 23 8 0.9210 -1.3763 1.6118 24 6 2.3161 -2.8717 2.7894 25 6 1.8392 -4.3301 2.9813 26 6 1.6408 -4.4764 4.4721 27 6 1.5841 -3.3100 5.0552 28 6 1.7346 -2.1915 4.0506 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.5612 1.9272 -0.8310 33 1 3.0798 1.3442 -0.1083 34 1 2.5246 3.8010 0.8499 35 1 2.0312 6.7589 4.2228 36 1 1.5611 -0.3874 -2.0628 37 1 3.0798 -0.6613 -1.1756 38 1 1.6228 -3.3089 -2.8737 39 1 3.1999 -2.5643 -2.4522 40 1 3.5950 -4.8441 -1.7764 41 1 1.8946 -5.0700 -1.2465 42 1 4.1065 -3.4154 0.0886 43 1 2.9893 -4.5906 0.8476 44 1 3.4045 -2.8134 2.7796 45 1 0.8988 -4.4944 2.4551 46 1 2.5992 -5.0276 2.6291 47 1 1.5573 -5.4218 4.9874 48 1 1.4467 -3.1636 6.1165 49 1 2.4238 -1.4347 4.4254 50 1 0.7653 -1.7447 3.8290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281927755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:32 Heat of formation + Delta-G solvation = -24.305750 kcal Electronic energy + Delta-G solvation = -31004.560692 eV Core-core repulsion = 27032.886076 eV Total energy + Delta-G solvation = -3971.674616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40937 -40.30927 -39.31240 -37.60907 -37.28730 -35.79784 -33.70306 -32.61341 -31.41861 -30.05052 -29.33371 -29.00739 -27.32434 -26.23112 -24.70711 -23.10722 -22.21052 -21.25800 -21.15359 -20.12338 -19.75615 -19.40947 -18.09810 -17.75247 -17.30066 -17.00180 -16.78022 -16.47978 -16.01488 -15.88853 -15.35478 -15.18282 -15.00932 -14.70595 -14.28381 -14.23718 -14.04480 -13.84105 -13.62279 -13.38357 -13.31237 -13.15227 -13.01463 -12.91147 -12.61885 -12.50247 -12.44284 -12.35244 -12.22087 -12.13054 -12.00824 -11.99966 -11.86792 -11.77047 -11.45165 -11.41157 -10.22927 -10.17374 -10.06600 -9.79641 -9.40206 -8.67114 -8.39449 -5.98524 1.27405 1.33601 1.35878 1.41954 2.05192 2.11683 2.22791 2.30509 2.74156 3.16642 3.35279 3.56694 3.67192 3.80970 3.84158 3.97584 4.05843 4.18403 4.25051 4.34407 4.35813 4.39558 4.42965 4.44942 4.54650 4.63891 4.69434 4.70472 4.73641 4.75680 4.80264 4.88202 4.97546 5.01539 5.05924 5.11815 5.18976 5.21805 5.25140 5.40856 5.45813 5.56567 5.60465 5.77465 5.95570 6.00464 6.18547 6.44158 6.64953 6.93116 6.94551 7.45546 7.79007 8.07941 8.79112 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.003743 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.693053 B = 7479.553490 C = 9128.801558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.502 5.502 3 C 0.051 3.949 4 C 0.450 3.550 5 O -0.579 6.579 6 N -0.602 5.602 7 C -0.320 4.320 8 H 0.050 0.950 9 C -0.018 4.018 10 N -0.940 5.940 11 Si 0.966 3.034 12 H -0.258 1.258 13 H -0.273 1.273 14 H -0.235 1.235 15 C 0.042 3.958 16 C 0.140 3.860 17 H 0.053 0.947 18 C -0.117 4.117 19 C -0.121 4.121 20 C 0.090 3.910 21 N -0.615 5.615 22 C 0.512 3.488 23 O -0.496 6.496 24 C -0.102 4.102 25 C -0.075 4.075 26 C -0.158 4.158 27 C -0.178 4.178 28 C -0.090 4.090 29 H 0.001 0.999 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.385 0.615 35 H 0.278 0.722 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.155 0.845 48 H 0.131 0.869 49 H 0.044 0.956 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.352 -25.313 -16.115 30.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.227 5.227 3 C -0.080 4.080 4 C 0.237 3.763 5 O -0.460 6.460 6 N -0.246 5.246 7 C -0.450 4.450 8 H 0.068 0.932 9 C -0.216 4.216 10 N -0.581 5.581 11 Si 0.787 3.213 12 H -0.183 1.183 13 H -0.198 1.198 14 H -0.158 1.158 15 C -0.086 4.086 16 C 0.036 3.964 17 H 0.071 0.929 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.032 4.032 21 N -0.352 5.352 22 C 0.299 3.701 23 O -0.368 6.368 24 C -0.124 4.124 25 C -0.112 4.112 26 C -0.176 4.176 27 C -0.196 4.196 28 C -0.127 4.127 29 H 0.019 0.981 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.220 0.780 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.120 0.880 45 H 0.089 0.911 46 H 0.125 0.875 47 H 0.172 0.828 48 H 0.148 0.852 49 H 0.063 0.937 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.586 -25.262 -14.840 30.029 hybrid contribution -0.144 1.993 -0.342 2.028 sum 6.442 -23.268 -15.182 28.520 Atomic orbital electron populations 1.21918 0.87268 1.00412 0.97483 1.61908 1.08500 1.10336 1.41935 1.21829 1.01803 0.91053 0.93327 1.20928 0.82994 0.81696 0.90654 1.90597 1.42575 1.64499 1.48353 1.42073 1.52586 1.12764 1.17133 1.18956 1.34244 0.96748 0.95008 0.93154 1.26081 0.98914 0.96886 0.99705 1.69816 1.47850 1.14142 1.26337 0.85344 0.78869 0.78917 0.78217 1.18291 1.19820 1.15841 1.22771 1.00511 0.94046 0.91322 1.21658 0.98125 0.92379 0.84280 0.92858 1.22696 1.01335 0.95503 0.95962 1.22788 1.03024 0.96593 0.93453 1.22592 0.92305 0.89405 0.98941 1.48352 1.44610 1.38075 1.04125 1.20203 0.83277 0.82529 0.84131 1.90969 1.33210 1.27089 1.85499 1.22033 1.01154 0.97164 0.92033 1.21302 1.01866 0.93417 0.94658 1.23482 1.00144 0.98382 0.95561 1.23363 1.02110 0.94813 0.99347 1.21163 1.00602 0.97203 0.93763 0.98137 0.91895 0.94188 0.91813 0.87561 0.77965 0.91307 0.93328 0.90087 0.88739 0.89359 0.87556 0.90411 0.91397 0.89468 0.87977 0.91107 0.87490 0.82787 0.85157 0.93719 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.94 6.92 127.69 0.88 3.83 16 2 N -0.50 -17.52 1.90 -927.04 -1.76 -19.28 16 3 C 0.05 1.86 5.45 85.56 0.47 2.33 16 4 C 0.45 22.67 7.51 87.66 0.66 23.33 16 5 O -0.58 -35.07 13.15 1.76 0.02 -35.04 16 6 N -0.60 -31.05 5.09 -306.98 -1.56 -32.61 16 7 C -0.32 -20.04 10.16 84.04 0.85 -19.18 16 8 H 0.05 3.75 7.39 -2.91 -0.02 3.72 16 9 C -0.02 -1.07 5.50 84.93 0.47 -0.61 16 10 N -0.94 -59.49 13.96 21.66 0.30 -59.18 16 11 Si 0.97 41.45 27.74 68.60 1.90 43.35 16 12 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 13 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 14 H -0.23 -8.65 6.52 99.48 0.65 -8.01 16 15 C 0.04 0.99 4.57 86.30 0.39 1.39 16 16 C 0.14 2.81 2.88 45.34 0.13 2.94 16 17 H 0.05 1.26 6.77 -2.39 -0.02 1.24 16 18 C -0.12 -1.21 6.50 31.87 0.21 -1.00 16 19 C -0.12 -0.94 7.09 32.08 0.23 -0.72 16 20 C 0.09 1.16 6.65 86.86 0.58 1.73 16 21 N -0.61 -13.72 3.06 -788.05 -2.41 -16.14 16 22 C 0.51 15.96 6.65 87.66 0.58 16.54 16 23 O -0.50 -20.59 8.69 1.80 0.02 -20.58 16 24 C -0.10 -2.75 2.88 -10.42 -0.03 -2.78 16 25 C -0.08 -1.43 5.35 30.53 0.16 -1.27 16 26 C -0.16 -3.12 10.78 26.26 0.28 -2.84 16 27 C -0.18 -4.62 10.77 26.27 0.28 -4.34 16 28 C -0.09 -3.05 6.18 30.54 0.19 -2.86 16 29 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.06 2.31 5.42 -2.39 -0.01 2.30 16 31 H 0.04 1.96 5.77 -2.39 -0.01 1.95 16 32 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 33 H 0.11 3.30 7.93 -2.39 -0.02 3.28 16 34 H 0.39 16.73 5.76 -92.71 -0.53 16.20 16 35 H 0.28 16.03 8.31 -92.71 -0.77 15.26 16 36 H 0.05 1.01 8.12 -2.38 -0.02 0.99 16 37 H 0.08 1.74 7.82 -2.39 -0.02 1.73 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.09 0.76 7.78 -2.39 -0.02 0.75 16 40 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 0.91 5.45 -2.38 -0.01 0.90 16 44 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.07 1.45 7.88 -2.38 -0.02 1.44 16 46 H 0.11 1.30 6.80 -2.39 -0.02 1.28 16 47 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 48 H 0.13 3.08 8.06 -2.91 -0.02 3.05 16 49 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 50 H 0.06 2.37 6.96 -2.39 -0.02 2.35 16 Total: -1.00 -87.66 379.54 3.19 -84.47 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: 0.35 Total: 38.53 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 6.34 Total: 16.48 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -5.44 Total: -127.21 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: 0.04 Total: -55.62 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.90 Total: 43.35 kcal Total: -87.66 3.19 -84.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281927755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.163 kcal (2) G-P(sol) polarization free energy of solvation -87.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds