Wall clock time and date at job start Tue Mar 31 2020 18:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00067 * 2 1 4 4 C 1.39052 * 119.99772 * 180.02562 * 2 1 3 5 5 C 1.39220 * 119.92560 * 179.72883 * 4 2 1 6 6 C 1.37613 * 120.06341 * 179.71691 * 5 4 2 7 7 C 1.39796 * 119.93239 * 0.55411 * 6 5 4 8 8 C 1.47516 * 120.07158 * 179.69964 * 7 6 5 9 9 O 1.21596 * 120.00313 * 180.02562 * 8 7 6 10 10 N 1.34783 * 119.99890 * 0.02562 * 8 7 6 11 11 C 1.46496 * 120.00061 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47289 * 180.02562 * 11 10 8 13 13 O 1.42897 * 109.47693 * 64.99392 * 12 11 10 14 14 C 1.42900 * 114.00581 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47114 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47621 * 65.00262 * 15 14 13 17 17 C 1.46497 * 120.00038 * 270.00228 * 16 15 14 18 18 C 1.36938 * 119.99927 * 89.99393 * 16 15 14 19 19 H 1.08002 * 120.00155 * 20.37177 * 18 16 15 20 20 C 1.38813 * 120.00013 * 200.36700 * 18 16 15 21 21 N 1.31619 * 119.99940 * 14.99814 * 20 18 16 22 22 Si 1.86801 * 119.99810 * 194.99373 * 20 18 16 23 23 H 1.48498 * 109.46898 * 85.00983 * 22 20 18 24 24 H 1.48502 * 109.46809 * 205.00267 * 22 20 18 25 25 H 1.48489 * 109.47558 * 325.00592 * 22 20 18 26 26 C 1.39797 * 119.86070 * 359.71748 * 7 6 5 27 27 C 1.37610 * 119.93166 * 0.02562 * 26 7 6 28 28 H 1.09003 * 109.47251 * 239.99801 * 1 2 3 29 29 H 1.09004 * 109.46867 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47033 * 119.99776 * 1 2 3 31 31 H 1.08993 * 109.47493 * 269.99874 * 3 2 1 32 32 H 1.09000 * 109.47380 * 30.00203 * 3 2 1 33 33 H 1.08999 * 109.47187 * 149.99715 * 3 2 1 34 34 H 1.07997 * 119.96776 * 359.97023 * 5 4 2 35 35 H 1.08002 * 120.03336 * 180.24990 * 6 5 4 36 36 H 0.97003 * 119.99590 * 359.97438 * 10 8 7 37 37 H 1.09008 * 109.47148 * 299.99991 * 11 10 8 38 38 H 1.09006 * 109.47374 * 59.99320 * 11 10 8 39 39 H 1.09003 * 109.47243 * 185.00275 * 12 11 10 40 40 H 1.09007 * 109.47180 * 304.99696 * 12 11 10 41 41 H 1.09000 * 109.47250 * 300.00695 * 14 13 12 42 42 H 1.09000 * 109.46682 * 60.00398 * 14 13 12 43 43 H 1.09008 * 109.47126 * 185.00312 * 15 14 13 44 44 H 1.08998 * 109.47205 * 304.99595 * 15 14 13 45 45 H 1.09000 * 109.47209 * 95.10077 * 17 16 15 46 46 H 1.09005 * 109.47059 * 215.09991 * 17 16 15 47 47 H 1.09000 * 109.46859 * 335.09987 * 17 16 15 48 48 H 0.96997 * 119.99880 * 179.97438 * 21 20 18 49 49 H 1.08001 * 120.03306 * 179.97438 * 26 7 6 50 50 H 1.07998 * 119.96440 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2043 -0.0005 5 6 3.5524 -1.2025 -0.0062 6 6 4.2433 -2.3926 -0.0009 7 6 3.5458 -3.6041 -0.0015 8 6 4.2833 -4.8817 -0.0024 9 8 3.6754 -5.9348 -0.0034 10 7 5.6312 -4.8817 -0.0023 11 6 6.3636 -6.1504 -0.0038 12 6 7.8678 -5.8709 -0.0027 13 8 8.2316 -5.2258 1.2194 14 6 9.6235 -4.9193 1.3231 15 6 9.8966 -4.2354 2.6641 16 7 9.6242 -5.1740 3.7555 17 6 8.2842 -5.2451 4.3432 18 6 10.6222 -5.9851 4.2261 19 1 11.6560 -5.7279 4.0484 20 6 10.3051 -7.1377 4.9317 21 7 9.0777 -7.6118 4.9002 22 14 11.6204 -8.0157 5.9259 23 1 11.7237 -7.3925 7.2697 24 1 11.2570 -9.4483 6.0713 25 1 12.9258 -7.9046 5.2270 26 6 2.1478 -3.6024 -0.0015 27 6 1.4627 -2.4090 -0.0014 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 2.3792 1.5834 -1.0276 32 1 1.6085 2.0284 0.5139 33 1 3.1499 1.1384 0.5139 34 1 4.0907 -0.2663 -0.0107 35 1 5.3233 -2.3907 -0.0013 36 1 6.1161 -4.0416 -0.0019 37 1 6.1002 -6.7231 0.8854 38 1 6.1003 -6.7209 -0.8946 39 1 8.4122 -6.8109 -0.0934 40 1 8.1178 -5.2237 -0.8434 41 1 10.2039 -5.8398 1.2601 42 1 9.9102 -4.2526 0.5098 43 1 10.9398 -3.9220 2.7064 44 1 9.2509 -3.3632 2.7654 45 1 7.7194 -6.0450 3.8644 46 1 8.3661 -5.4471 5.4112 47 1 7.7701 -4.2960 4.1913 48 1 8.8562 -8.4174 5.3929 49 1 1.6062 -4.5368 -0.0023 50 1 0.3827 -2.4071 -0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283421910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:43 Heat of formation + Delta-G solvation = -16.052362 kcal Electronic energy + Delta-G solvation = -28543.047487 eV Core-core repulsion = 24571.730765 eV Total energy + Delta-G solvation = -3971.316722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.24863 -39.00829 -37.57296 -36.25376 -35.37258 -34.33494 -31.59923 -31.32544 -30.71873 -29.18203 -28.52776 -27.71450 -25.68850 -25.53415 -23.01790 -22.74893 -22.43929 -21.58790 -20.31303 -20.10288 -18.24803 -16.98483 -16.82137 -16.39756 -16.02641 -15.74977 -15.50688 -15.13276 -15.00795 -14.75407 -14.54826 -14.06634 -13.91860 -13.72328 -13.58820 -13.32347 -13.15888 -13.06384 -12.77118 -12.68543 -12.39350 -12.31368 -12.28619 -12.07627 -11.49727 -11.34836 -11.03091 -10.87429 -10.79468 -10.72831 -10.47347 -10.09494 -10.02678 -9.88293 -9.77991 -9.71669 -9.16139 -8.97685 -8.86951 -8.43916 -7.61020 -6.65662 -5.61143 -3.05423 0.98024 1.29400 2.71840 2.99856 3.37957 3.43317 3.49166 3.50684 3.91808 4.21806 4.52472 4.54160 4.58145 4.73092 4.82221 4.91290 4.92409 5.14628 5.17911 5.23382 5.26114 5.27432 5.34985 5.38146 5.43928 5.49343 5.59639 5.73342 5.81134 5.84352 5.96967 6.04667 6.11361 6.18870 6.24862 6.26925 6.36541 6.52891 6.56745 6.64546 6.80110 6.84045 6.99390 7.11354 7.55386 7.70920 7.83131 7.87063 8.02868 8.43020 8.49124 9.34211 9.98926 10.48576 11.42844 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.002174 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.797087 B =12874.683220 C =13338.087548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.633 5.633 3 C 0.089 3.911 4 C 0.235 3.765 5 C -0.207 4.207 6 C -0.033 4.033 7 C -0.192 4.192 8 C 0.562 3.438 9 O -0.550 6.550 10 N -0.718 5.718 11 C 0.125 3.875 12 C 0.050 3.950 13 O -0.366 6.366 14 C 0.042 3.958 15 C 0.153 3.847 16 N -0.596 5.596 17 C 0.174 3.826 18 C -0.257 4.257 19 H 0.067 0.933 20 C 0.001 3.999 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.281 1.281 26 C -0.010 4.010 27 C -0.207 4.207 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.401 0.599 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.048 0.952 42 H 0.024 0.976 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.033 0.967 46 H 0.035 0.965 47 H -0.005 1.005 48 H 0.251 0.749 49 H 0.134 0.866 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.710 17.591 -14.549 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.343 5.343 3 C -0.054 4.054 4 C 0.132 3.868 5 C -0.229 4.229 6 C -0.052 4.052 7 C -0.197 4.197 8 C 0.350 3.650 9 O -0.430 6.430 10 N -0.369 5.369 11 C 0.002 3.998 12 C -0.027 4.027 13 O -0.285 6.285 14 C -0.038 4.038 15 C 0.025 3.975 16 N -0.318 5.318 17 C 0.029 3.971 18 C -0.387 4.387 19 H 0.085 0.915 20 C -0.198 4.198 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.207 1.207 26 C -0.029 4.029 27 C -0.230 4.230 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.236 0.764 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.042 0.958 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.013 0.987 48 H 0.061 0.939 49 H 0.152 0.848 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.434 16.904 -14.289 26.984 hybrid contribution 1.166 -0.275 0.298 1.234 sum -14.268 16.629 -13.991 25.997 Atomic orbital electron populations 1.21660 0.79254 1.02556 1.01554 1.46290 1.05293 1.03409 1.79320 1.21732 0.97583 0.84686 1.01372 1.18003 0.91312 0.85720 0.91804 1.20586 0.91912 0.98636 1.11766 1.21062 0.99459 0.91219 0.93505 1.19689 0.94240 0.92689 1.13090 1.18157 0.81954 0.88863 0.76012 1.90755 1.68344 1.32997 1.50869 1.45805 1.06045 1.09938 1.75146 1.21387 0.89500 0.85937 1.03009 1.22612 0.94217 0.97680 0.88214 1.88018 1.25499 1.78734 1.36269 1.23519 0.81567 0.99163 0.99505 1.20884 0.98359 0.92336 0.85959 1.43908 1.09118 1.42986 1.35836 1.20693 0.84585 0.94787 0.97014 1.19191 0.87533 1.01429 1.30515 0.91512 1.24975 0.96436 0.96567 1.01807 1.70118 1.18049 1.22492 1.43907 0.86326 0.81148 0.78738 0.80612 1.21563 1.21853 1.20716 1.20992 0.92679 0.97935 0.91326 1.20578 0.99743 0.90673 1.11963 0.92465 0.90797 0.92524 0.93165 0.91393 0.90926 0.85471 0.85597 0.76389 0.90073 0.90546 0.92067 0.93877 0.93330 0.95754 0.92406 0.93837 0.94822 0.94624 0.98693 0.93871 0.84769 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 9.39 59.85 0.56 1.04 16 2 N -0.63 -4.71 3.39 -187.56 -0.64 -5.34 16 3 C 0.09 0.46 10.14 59.85 0.61 1.07 16 4 C 0.24 2.28 6.55 -83.86 -0.55 1.73 16 5 C -0.21 -2.00 9.18 -39.45 -0.36 -2.36 16 6 C -0.03 -0.36 9.53 -39.23 -0.37 -0.73 16 7 C -0.19 -2.53 5.88 -104.95 -0.62 -3.14 16 8 C 0.56 8.84 7.76 -12.48 -0.10 8.74 16 9 O -0.55 -10.52 16.34 5.28 0.09 -10.44 16 10 N -0.72 -10.25 5.45 -61.35 -0.33 -10.58 16 11 C 0.13 1.90 6.06 -4.05 -0.02 1.87 16 12 C 0.05 0.76 6.07 37.15 0.23 0.98 16 13 O -0.37 -6.96 9.85 -35.23 -0.35 -7.30 16 14 C 0.04 0.78 6.28 37.15 0.23 1.01 16 15 C 0.15 3.15 6.11 -4.05 -0.02 3.12 16 16 N -0.60 -15.42 2.89 -181.12 -0.52 -15.94 16 17 C 0.17 4.57 8.62 59.85 0.52 5.09 16 18 C -0.26 -7.18 9.68 -15.06 -0.15 -7.33 16 19 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 20 C 0.00 0.02 5.06 -17.43 -0.09 -0.07 16 21 N -0.90 -27.17 10.67 55.49 0.59 -26.58 16 22 Si 0.90 22.30 29.58 -169.99 -5.03 17.27 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.01 -0.12 9.58 -39.23 -0.38 -0.49 16 27 C -0.21 -2.10 9.28 -39.45 -0.37 -2.47 16 28 H 0.06 0.30 7.93 -51.93 -0.41 -0.12 16 29 H 0.07 0.24 7.79 -51.93 -0.40 -0.16 16 30 H 0.06 0.28 7.93 -51.93 -0.41 -0.13 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.25 7.92 -51.93 -0.41 -0.16 16 33 H 0.07 0.37 6.18 -51.93 -0.32 0.05 16 34 H 0.13 0.97 6.12 -52.49 -0.32 0.65 16 35 H 0.13 1.15 6.39 -52.49 -0.34 0.82 16 36 H 0.40 4.91 6.49 -40.82 -0.26 4.65 16 37 H 0.08 1.48 8.14 -51.92 -0.42 1.05 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 1.11 8.03 -51.92 -0.42 0.70 16 44 H 0.04 0.83 7.86 -51.93 -0.41 0.42 16 45 H 0.03 0.97 7.40 -51.93 -0.38 0.59 16 46 H 0.04 1.00 7.21 -51.93 -0.37 0.62 16 47 H -0.01 -0.13 7.83 -51.93 -0.41 -0.54 16 48 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.13 1.64 7.64 -52.49 -0.40 1.24 16 50 H 0.13 1.02 6.70 -52.49 -0.35 0.67 16 LS Contribution 407.24 15.07 6.14 6.14 Total: -1.00 -35.29 407.24 -9.07 -44.35 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -8.13 Total: 0.36 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -0.88 Total: 8.07 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.90 Total: -58.45 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.26 Total: -17.74 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.29 -9.07 -44.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283421910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.303 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds