Wall clock time and date at job start Tue Mar 31 2020 18:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00067 * 2 1 4 4 C 1.39052 * 119.99772 * 180.02562 * 2 1 3 5 5 C 1.39220 * 119.92560 * 179.72883 * 4 2 1 6 6 C 1.37613 * 120.06341 * 179.71691 * 5 4 2 7 7 C 1.39796 * 119.93239 * 0.55411 * 6 5 4 8 8 C 1.47516 * 120.07158 * 179.69964 * 7 6 5 9 9 O 1.21596 * 120.00313 * 180.02562 * 8 7 6 10 10 N 1.34783 * 119.99890 * 0.02562 * 8 7 6 11 11 C 1.46496 * 120.00061 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47289 * 180.02562 * 11 10 8 13 13 O 1.42897 * 109.47693 * 64.99392 * 12 11 10 14 14 C 1.42900 * 114.00581 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47114 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47621 * 65.00262 * 15 14 13 17 17 C 1.46497 * 120.00038 * 270.00228 * 16 15 14 18 18 C 1.36938 * 119.99927 * 89.99393 * 16 15 14 19 19 H 1.08002 * 120.00155 * 20.37177 * 18 16 15 20 20 C 1.38813 * 120.00013 * 200.36700 * 18 16 15 21 21 N 1.31619 * 119.99940 * 14.99814 * 20 18 16 22 22 Si 1.86801 * 119.99810 * 194.99373 * 20 18 16 23 23 H 1.48498 * 109.46898 * 85.00983 * 22 20 18 24 24 H 1.48502 * 109.46809 * 205.00267 * 22 20 18 25 25 H 1.48489 * 109.47558 * 325.00592 * 22 20 18 26 26 C 1.39797 * 119.86070 * 359.71748 * 7 6 5 27 27 C 1.37610 * 119.93166 * 0.02562 * 26 7 6 28 28 H 1.09003 * 109.47251 * 239.99801 * 1 2 3 29 29 H 1.09004 * 109.46867 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47033 * 119.99776 * 1 2 3 31 31 H 1.08993 * 109.47493 * 269.99874 * 3 2 1 32 32 H 1.09000 * 109.47380 * 30.00203 * 3 2 1 33 33 H 1.08999 * 109.47187 * 149.99715 * 3 2 1 34 34 H 1.07997 * 119.96776 * 359.97023 * 5 4 2 35 35 H 1.08002 * 120.03336 * 180.24990 * 6 5 4 36 36 H 0.97003 * 119.99590 * 359.97438 * 10 8 7 37 37 H 1.09008 * 109.47148 * 299.99991 * 11 10 8 38 38 H 1.09006 * 109.47374 * 59.99320 * 11 10 8 39 39 H 1.09003 * 109.47243 * 185.00275 * 12 11 10 40 40 H 1.09007 * 109.47180 * 304.99696 * 12 11 10 41 41 H 1.09000 * 109.47250 * 300.00695 * 14 13 12 42 42 H 1.09000 * 109.46682 * 60.00398 * 14 13 12 43 43 H 1.09008 * 109.47126 * 185.00312 * 15 14 13 44 44 H 1.08998 * 109.47205 * 304.99595 * 15 14 13 45 45 H 1.09000 * 109.47209 * 95.10077 * 17 16 15 46 46 H 1.09005 * 109.47059 * 215.09991 * 17 16 15 47 47 H 1.09000 * 109.46859 * 335.09987 * 17 16 15 48 48 H 0.96997 * 119.99880 * 179.97438 * 21 20 18 49 49 H 1.08001 * 120.03306 * 179.97438 * 26 7 6 50 50 H 1.07998 * 119.96440 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2043 -0.0005 5 6 3.5524 -1.2025 -0.0062 6 6 4.2433 -2.3926 -0.0009 7 6 3.5458 -3.6041 -0.0015 8 6 4.2833 -4.8817 -0.0024 9 8 3.6754 -5.9348 -0.0034 10 7 5.6312 -4.8817 -0.0023 11 6 6.3636 -6.1504 -0.0038 12 6 7.8678 -5.8709 -0.0027 13 8 8.2316 -5.2258 1.2194 14 6 9.6235 -4.9193 1.3231 15 6 9.8966 -4.2354 2.6641 16 7 9.6242 -5.1740 3.7555 17 6 8.2842 -5.2451 4.3432 18 6 10.6222 -5.9851 4.2261 19 1 11.6560 -5.7279 4.0484 20 6 10.3051 -7.1377 4.9317 21 7 9.0777 -7.6118 4.9002 22 14 11.6204 -8.0157 5.9259 23 1 11.7237 -7.3925 7.2697 24 1 11.2570 -9.4483 6.0713 25 1 12.9258 -7.9046 5.2270 26 6 2.1478 -3.6024 -0.0015 27 6 1.4627 -2.4090 -0.0014 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 2.3792 1.5834 -1.0276 32 1 1.6085 2.0284 0.5139 33 1 3.1499 1.1384 0.5139 34 1 4.0907 -0.2663 -0.0107 35 1 5.3233 -2.3907 -0.0013 36 1 6.1161 -4.0416 -0.0019 37 1 6.1002 -6.7231 0.8854 38 1 6.1003 -6.7209 -0.8946 39 1 8.4122 -6.8109 -0.0934 40 1 8.1178 -5.2237 -0.8434 41 1 10.2039 -5.8398 1.2601 42 1 9.9102 -4.2526 0.5098 43 1 10.9398 -3.9220 2.7064 44 1 9.2509 -3.3632 2.7654 45 1 7.7194 -6.0450 3.8644 46 1 8.3661 -5.4471 5.4112 47 1 7.7701 -4.2960 4.1913 48 1 8.8562 -8.4174 5.3929 49 1 1.6062 -4.5368 -0.0023 50 1 0.3827 -2.4071 -0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283421910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:42 Heat of formation + Delta-G solvation = -39.517562 kcal Electronic energy + Delta-G solvation = -28544.065014 eV Core-core repulsion = 24571.730765 eV Total energy + Delta-G solvation = -3972.334250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.21403 -39.97665 -38.99778 -37.22856 -36.94898 -35.71474 -33.41716 -32.26245 -31.69814 -30.49594 -29.27163 -28.95839 -27.80943 -26.29538 -24.82176 -23.82286 -23.22774 -22.60571 -22.12260 -21.11318 -19.15677 -18.76015 -17.80524 -17.62463 -17.39819 -16.93951 -16.54360 -16.15017 -16.10971 -15.94461 -15.83417 -15.41396 -15.22134 -15.08597 -14.74997 -14.54452 -14.38441 -14.10885 -13.83344 -13.50010 -13.40029 -13.30867 -13.13850 -13.00666 -12.94806 -12.79691 -12.69910 -12.51962 -12.47191 -12.31616 -12.00063 -11.77388 -11.76437 -11.66000 -10.99978 -10.83199 -10.60051 -10.36368 -10.10814 -9.97391 -8.75063 -8.28812 -7.76802 -5.22874 0.07707 0.49286 1.46676 1.48983 1.56764 1.94111 2.17779 2.25385 2.53904 2.88138 3.00014 3.35442 3.77872 3.81920 3.86947 3.98177 4.04325 4.18314 4.19470 4.36941 4.40284 4.47220 4.52823 4.55189 4.60531 4.61314 4.65174 4.69699 4.70896 4.79380 4.89526 4.91343 4.92985 4.95009 5.02133 5.07442 5.22668 5.23301 5.33519 5.37616 5.41898 5.52064 5.67283 5.76328 5.83396 6.27346 6.35560 6.43504 6.48529 6.59556 7.19238 7.26610 7.93904 8.38921 9.26342 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.002174 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.797087 B =12874.683220 C =13338.087548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.632 5.632 3 C 0.081 3.919 4 C 0.237 3.763 5 C -0.210 4.210 6 C -0.030 4.030 7 C -0.221 4.221 8 C 0.556 3.444 9 O -0.597 6.597 10 N -0.708 5.708 11 C 0.130 3.870 12 C 0.055 3.945 13 O -0.394 6.394 14 C 0.051 3.949 15 C 0.144 3.856 16 N -0.613 5.613 17 C 0.195 3.805 18 C -0.258 4.258 19 H 0.077 0.923 20 C -0.061 4.061 21 N -0.938 5.938 22 Si 0.967 3.033 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.265 1.265 26 C -0.022 4.022 27 C -0.211 4.211 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.142 0.858 36 H 0.412 0.588 37 H 0.040 0.960 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.021 0.979 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.062 0.938 45 H -0.002 1.002 46 H 0.006 0.994 47 H 0.021 0.979 48 H 0.243 0.757 49 H 0.121 0.879 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.896 20.991 -15.754 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.340 5.340 3 C -0.061 4.061 4 C 0.131 3.869 5 C -0.232 4.232 6 C -0.049 4.049 7 C -0.227 4.227 8 C 0.347 3.653 9 O -0.480 6.480 10 N -0.360 5.360 11 C 0.006 3.994 12 C -0.022 4.022 13 O -0.313 6.313 14 C -0.028 4.028 15 C 0.018 3.982 16 N -0.336 5.336 17 C 0.049 3.951 18 C -0.389 4.389 19 H 0.095 0.905 20 C -0.255 4.255 21 N -0.585 5.585 22 Si 0.796 3.204 23 H -0.214 1.214 24 H -0.227 1.227 25 H -0.190 1.190 26 C -0.042 4.042 27 C -0.234 4.234 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.170 0.830 35 H 0.160 0.840 36 H 0.250 0.750 37 H 0.059 0.941 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.039 0.961 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.017 0.983 46 H 0.025 0.975 47 H 0.039 0.961 48 H 0.053 0.947 49 H 0.139 0.861 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.587 20.396 -15.528 29.494 hybrid contribution 0.821 -1.122 0.607 1.517 sum -13.766 19.273 -14.921 27.993 Atomic orbital electron populations 1.21855 0.77999 1.04210 1.01691 1.46616 1.06355 1.03341 1.77674 1.21944 0.97864 0.83969 1.02293 1.18193 0.91710 0.86480 0.90532 1.20859 0.92097 0.99102 1.11114 1.21215 1.00271 0.90678 0.92737 1.19580 0.94524 0.92207 1.16355 1.18663 0.82243 0.89368 0.75017 1.90715 1.69227 1.34799 1.53274 1.45712 1.05744 1.10069 1.74516 1.21267 0.90109 0.86264 1.01765 1.22696 0.93400 0.98095 0.88014 1.87975 1.25618 1.79219 1.38531 1.23275 0.81228 0.98554 0.99767 1.21159 0.99839 0.91812 0.85356 1.44138 1.08264 1.43427 1.37772 1.20313 0.85153 0.94726 0.94868 1.19593 0.88475 1.01180 1.29610 0.90521 1.25787 0.98429 0.97856 1.03459 1.70315 1.20144 1.22897 1.45175 0.85276 0.79232 0.76845 0.79061 1.21380 1.22738 1.19006 1.21009 0.92654 0.98392 0.92174 1.20709 1.00604 0.90240 1.11810 0.92499 0.88469 0.92221 0.92234 0.89498 0.90777 0.83029 0.84016 0.75019 0.94106 0.89128 0.92597 0.89951 0.96068 0.90985 0.90762 0.91973 0.98338 0.97474 0.96080 0.94734 0.86077 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 9.39 127.77 1.20 1.85 16 2 N -0.63 -7.62 3.39 -747.30 -2.53 -10.15 16 3 C 0.08 0.57 10.14 127.77 1.30 1.86 16 4 C 0.24 4.15 6.55 38.47 0.25 4.40 16 5 C -0.21 -3.59 9.18 22.36 0.21 -3.38 16 6 C -0.03 -0.60 9.53 22.50 0.21 -0.39 16 7 C -0.22 -5.94 5.88 -20.08 -0.12 -6.05 16 8 C 0.56 18.26 7.76 86.69 0.67 18.94 16 9 O -0.60 -24.39 16.34 -4.02 -0.07 -24.46 16 10 N -0.71 -20.35 5.45 -466.28 -2.54 -22.90 16 11 C 0.13 4.04 6.06 86.38 0.52 4.56 16 12 C 0.05 1.59 6.07 71.98 0.44 2.03 16 13 O -0.39 -14.55 9.85 -148.98 -1.47 -16.01 16 14 C 0.05 1.77 6.28 71.98 0.45 2.22 16 15 C 0.14 5.62 6.11 86.38 0.53 6.15 16 16 N -0.61 -31.45 2.89 -726.94 -2.10 -33.56 16 17 C 0.19 10.42 8.62 127.77 1.10 11.52 16 18 C -0.26 -14.35 9.68 84.03 0.81 -13.54 16 19 H 0.08 4.03 7.86 -2.91 -0.02 4.01 16 20 C -0.06 -3.51 5.06 84.86 0.43 -3.08 16 21 N -0.94 -58.48 10.67 21.65 0.23 -58.25 16 22 Si 0.97 46.34 29.58 68.60 2.03 48.37 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 C -0.02 -0.57 9.58 22.50 0.22 -0.35 16 27 C -0.21 -4.15 9.28 22.36 0.21 -3.95 16 28 H 0.06 0.47 7.93 -2.39 -0.02 0.45 16 29 H 0.10 0.31 7.79 -2.39 -0.02 0.29 16 30 H 0.06 0.45 7.93 -2.39 -0.02 0.43 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.09 0.30 7.92 -2.39 -0.02 0.28 16 33 H 0.07 0.51 6.18 -2.39 -0.01 0.50 16 34 H 0.15 1.79 6.12 -2.91 -0.02 1.77 16 35 H 0.14 2.31 6.39 -2.91 -0.02 2.29 16 36 H 0.41 9.62 6.49 -92.71 -0.60 9.02 16 37 H 0.04 1.59 8.14 -2.38 -0.02 1.58 16 38 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.07 2.63 8.03 -2.38 -0.02 2.61 16 44 H 0.06 2.19 7.86 -2.39 -0.02 2.17 16 45 H 0.00 -0.10 7.40 -2.39 -0.02 -0.12 16 46 H 0.01 0.38 7.21 -2.38 -0.02 0.36 16 47 H 0.02 0.98 7.83 -2.39 -0.02 0.96 16 48 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 49 H 0.12 3.25 7.64 -2.91 -0.02 3.23 16 50 H 0.14 2.18 6.70 -2.91 -0.02 2.16 16 Total: -1.00 -79.45 407.24 2.31 -77.14 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.33 Total: 17.04 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 8.43 Total: 22.78 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -6.95 Total: -124.85 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -1.53 Total: -40.47 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -79.45 2.31 -77.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283421910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.622 kcal (2) G-P(sol) polarization free energy of solvation -79.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds