Wall clock time and date at job start Tue Mar 31 2020 18:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34779 * 119.99974 * 2 1 4 4 O 1.21280 * 120.00038 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00023 * 0.02562 * 3 2 1 6 6 H 1.09003 * 115.54964 * 325.57623 * 5 3 2 7 7 C 1.53001 * 117.50220 * 111.24757 * 5 3 2 8 8 C 1.52992 * 117.50243 * 179.91099 * 5 3 2 9 9 C 1.52991 * 138.59037 * 121.61559 * 8 5 3 10 10 C 1.52995 * 138.58716 * 23.39633 * 8 5 3 11 11 C 1.46503 * 120.00302 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.46903 * 179.97438 * 11 2 1 13 13 C 1.52993 * 109.47172 * 300.00185 * 11 2 1 14 14 N 1.46905 * 109.47039 * 304.99733 * 13 11 2 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 13 17 17 O 1.21292 * 120.00024 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99767 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99759 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00171 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00074 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99768 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00310 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47100 * 90.00351 * 23 21 19 25 25 H 1.48501 * 109.47251 * 210.00371 * 23 21 19 26 26 H 1.48503 * 109.46881 * 330.00485 * 23 21 19 27 27 C 1.53002 * 109.46578 * 59.99940 * 11 2 1 28 28 C 1.53000 * 117.49810 * 248.74457 * 27 11 2 29 29 C 1.53001 * 117.49554 * 180.08451 * 27 11 2 30 30 H 1.09003 * 109.46974 * 269.99739 * 1 2 3 31 31 H 1.08994 * 109.47374 * 29.99294 * 1 2 3 32 32 H 1.08998 * 109.47062 * 149.99812 * 1 2 3 33 33 H 1.09005 * 117.49774 * 214.97591 * 7 5 3 34 34 H 1.08998 * 117.50119 * 0.02562 * 7 5 3 35 35 H 1.08999 * 117.49631 * 336.59504 * 9 8 5 36 36 H 1.09001 * 117.50416 * 121.61943 * 9 8 5 37 37 H 1.08996 * 117.49977 * 238.38447 * 10 8 5 38 38 H 1.09003 * 117.49977 * 23.40723 * 10 8 5 39 39 H 1.09001 * 109.47393 * 185.00014 * 13 11 2 40 40 H 1.08998 * 109.47408 * 64.99660 * 13 11 2 41 41 H 1.00901 * 110.99869 * 56.04956 * 14 13 11 42 42 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 43 43 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 44 44 H 0.96997 * 120.00713 * 359.97438 * 18 16 15 45 45 H 0.96999 * 119.99907 * 179.97438 * 22 21 19 46 46 H 1.09000 * 115.55086 * 34.41810 * 27 11 2 47 47 H 1.09000 * 117.49691 * 0.02562 * 28 27 11 48 48 H 1.09004 * 117.49527 * 145.02310 * 28 27 11 49 49 H 1.09003 * 117.49798 * 214.97729 * 29 27 11 50 50 H 1.09005 * 117.49836 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.4475 2.4740 -0.5550 7 6 1.4585 3.3298 1.2656 8 6 2.2073 3.7627 0.0027 9 6 2.3772 5.0163 -0.8577 10 6 3.6075 4.2318 -0.3974 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0694 -0.0009 13 6 1.8280 -2.0716 1.2482 14 7 2.0714 -1.2552 2.4450 15 6 1.7275 -1.9957 3.6663 16 6 1.9892 -1.1280 4.8703 17 8 2.4202 -0.0036 4.7253 18 7 1.7451 -1.6018 6.1082 19 6 1.9837 -0.8126 7.2035 20 1 2.3676 0.1886 7.0745 21 6 1.7317 -1.3009 8.4798 22 7 1.2651 -2.5194 8.6368 23 14 2.0574 -0.2259 9.9724 24 1 0.8352 0.5521 10.2982 25 1 2.4220 -1.0825 11.1293 26 1 3.1739 0.7073 9.6760 27 6 1.8279 -2.0704 -1.2502 28 6 1.0115 -3.3493 -1.0532 29 6 2.4914 -3.4366 -1.4349 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3633 -0.8900 -0.5139 33 1 0.5689 3.8959 1.5420 34 1 2.0520 2.9502 2.0973 35 1 2.1001 4.9461 -1.9095 36 1 2.1893 5.9804 -0.3851 37 1 4.2289 4.6797 0.3780 38 1 4.1399 3.6455 -1.1464 39 1 2.4378 -2.9739 1.2938 40 1 0.7743 -2.3470 1.2045 41 1 1.5667 -0.3829 2.3965 42 1 0.6731 -2.2709 3.6395 43 1 2.3369 -2.8972 3.7283 44 1 1.4008 -2.5012 6.2242 45 1 1.0895 -2.8604 9.5278 46 1 1.6316 -1.4810 -2.1459 47 1 0.7375 -3.6194 -0.0333 48 1 0.2785 -3.6015 -1.8195 49 1 2.7312 -3.7462 -2.4522 50 1 3.1916 -3.7641 -0.6664 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283543147.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:12 Heat of formation + Delta-G solvation = 7.409325 kcal Electronic energy + Delta-G solvation = -29528.018050 eV Core-core repulsion = 25557.718703 eV Total energy + Delta-G solvation = -3970.299347 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47178 -40.19914 -39.52488 -38.14264 -36.58743 -36.01281 -35.52274 -33.56285 -33.28295 -30.73772 -28.32774 -27.51805 -26.22826 -24.90992 -23.97276 -23.29634 -23.13391 -21.41703 -21.14745 -20.17286 -19.87088 -19.47073 -18.40220 -17.98124 -17.21363 -17.11920 -16.80287 -16.44140 -16.21797 -15.91349 -15.85268 -15.67787 -15.34599 -15.09369 -14.82396 -14.39460 -14.27841 -13.91674 -13.55588 -13.50183 -13.41926 -13.27816 -13.06706 -12.97030 -12.72735 -12.61755 -12.44816 -12.37481 -12.26221 -12.18569 -12.13188 -11.53203 -11.39989 -11.16507 -11.08553 -10.94343 -10.91091 -10.58321 -10.39800 -10.03795 -9.68082 -9.29761 -8.48795 -5.97590 1.36035 1.39977 1.49029 1.52926 1.86293 2.02144 2.27350 2.74045 2.78753 2.81812 2.96375 3.18137 3.32536 3.44122 3.63004 3.79225 3.84234 3.90905 4.00631 4.04323 4.08835 4.20945 4.28354 4.34063 4.44152 4.47421 4.51177 4.54072 4.57576 4.63649 4.72974 4.73926 4.76349 4.79588 4.83245 4.90934 4.96488 5.00024 5.04551 5.06950 5.19757 5.25573 5.29689 5.38715 5.60255 5.85706 6.07678 6.30536 6.40422 6.58120 7.10528 7.21964 7.53273 8.09442 8.68632 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009315 B = 0.003207 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.063333 B = 8729.979062 C =11149.868841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.602 5.602 3 C 0.534 3.466 4 O -0.576 6.576 5 C -0.134 4.134 6 H 0.158 0.842 7 C -0.102 4.102 8 C -0.224 4.224 9 C -0.095 4.095 10 C -0.138 4.138 11 C 0.177 3.823 12 H 0.071 0.929 13 C 0.054 3.946 14 N -0.686 5.686 15 C 0.066 3.934 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.571 5.571 19 C -0.335 4.335 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.268 1.268 25 H -0.269 1.269 26 H -0.276 1.276 27 C -0.166 4.166 28 C -0.167 4.167 29 C -0.174 4.174 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.340 0.660 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.110 0.890 47 H 0.103 0.897 48 H 0.111 0.889 49 H 0.107 0.893 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.527 2.307 -23.333 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.334 5.334 3 C 0.323 3.677 4 O -0.455 6.455 5 C -0.155 4.155 6 H 0.175 0.825 7 C -0.139 4.139 8 C -0.225 4.225 9 C -0.131 4.131 10 C -0.175 4.175 11 C 0.073 3.927 12 H 0.090 0.910 13 C -0.075 4.075 14 N -0.319 5.319 15 C -0.066 4.066 16 C 0.223 3.777 17 O -0.511 6.511 18 N -0.208 5.208 19 C -0.464 4.464 20 H 0.094 0.906 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.193 1.193 25 H -0.194 1.194 26 H -0.201 1.201 27 C -0.186 4.186 28 C -0.204 4.204 29 C -0.211 4.211 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.150 0.850 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.159 0.841 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.128 0.872 47 H 0.122 0.878 48 H 0.130 0.870 49 H 0.125 0.875 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.002 2.754 -23.212 24.133 hybrid contribution -0.531 -0.210 1.176 1.308 sum -6.534 2.545 -22.036 23.125 Atomic orbital electron populations 1.22051 0.77486 1.05286 1.02373 1.47787 1.08107 1.04711 1.72751 1.20235 0.87101 0.85566 0.74763 1.90669 1.16056 1.87714 1.51060 1.22079 1.01273 0.87335 1.04795 0.82462 1.22642 1.02011 0.99863 0.89373 1.21416 1.01679 0.97134 1.02269 1.22861 0.98164 0.92849 0.99241 1.22585 0.89939 1.02303 1.02654 1.20434 0.96797 0.82584 0.92906 0.91035 1.22512 1.00603 0.96218 0.88183 1.59939 1.64237 1.07000 1.00710 1.21538 1.00876 0.96289 0.87892 1.20887 0.83016 0.88616 0.85168 1.90508 1.51327 1.22743 1.86514 1.41900 1.57968 1.16330 1.04601 1.19640 1.42832 0.98614 0.85361 0.90629 1.26021 0.96221 0.97729 1.01097 1.69667 1.44698 1.16480 1.25125 0.84949 0.78736 0.77798 0.76983 1.19327 1.19371 1.20088 1.22428 1.07564 0.90459 0.98114 1.23264 0.94237 0.98998 1.03857 1.23058 0.96429 0.98159 1.03499 0.93140 0.88673 0.88735 0.84954 0.91398 0.86835 0.86591 0.89127 0.89661 0.89398 0.92230 0.84088 0.91152 0.87866 0.76904 0.91216 0.87222 0.87847 0.87036 0.87469 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 9.41 127.77 1.20 2.26 16 2 N -0.60 -14.17 1.83 -822.61 -1.51 -15.67 16 3 C 0.53 15.95 7.46 87.66 0.65 16.61 16 4 O -0.58 -22.87 15.57 -3.03 -0.05 -22.92 16 5 C -0.13 -3.10 5.28 -11.54 -0.06 -3.16 16 6 H 0.16 2.37 6.44 -2.39 -0.02 2.35 16 7 C -0.10 -2.57 10.24 30.62 0.31 -2.26 16 8 C -0.22 -5.42 5.06 -52.16 -0.26 -5.68 16 9 C -0.09 -1.63 10.53 30.59 0.32 -1.30 16 10 C -0.14 -3.40 10.16 30.59 0.31 -3.09 16 11 C 0.18 4.30 2.74 44.99 0.12 4.42 16 12 H 0.07 2.36 6.90 -2.39 -0.02 2.34 16 13 C 0.05 1.31 3.66 86.30 0.32 1.63 16 14 N -0.69 -23.77 6.12 -517.93 -3.17 -26.94 16 15 C 0.07 2.37 6.17 85.56 0.53 2.90 16 16 C 0.44 21.62 7.82 87.66 0.69 22.30 16 17 O -0.62 -36.58 15.78 -3.07 -0.05 -36.63 16 18 N -0.57 -29.99 5.29 -306.99 -1.62 -31.61 16 19 C -0.33 -19.48 9.68 84.04 0.81 -18.66 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 22 N -0.92 -49.91 13.05 21.66 0.28 -49.63 16 23 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 C -0.17 -2.84 4.96 -10.79 -0.05 -2.89 16 28 C -0.17 -2.09 9.51 30.62 0.29 -1.80 16 29 C -0.17 -2.60 9.94 30.62 0.30 -2.30 16 30 H 0.05 0.85 8.13 -2.39 -0.02 0.83 16 31 H 0.09 1.00 6.00 -2.39 -0.01 0.98 16 32 H 0.09 1.04 7.20 -2.39 -0.02 1.03 16 33 H 0.13 2.52 8.14 -2.38 -0.02 2.50 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.09 2.01 7.44 -2.39 -0.02 2.00 16 40 H 0.06 1.16 6.30 -2.39 -0.02 1.15 16 41 H 0.34 12.71 7.55 -89.69 -0.68 12.03 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 44 H 0.40 19.62 7.90 -92.71 -0.73 18.89 16 45 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 46 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.10 1.32 5.80 -2.39 -0.01 1.30 16 48 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.09 1.51 7.66 -2.38 -0.02 1.49 16 Total: -1.00 -78.69 408.96 1.43 -77.26 By element: Atomic # 1 Polarization: 52.11 SS G_CDS: -0.44 Total: 51.67 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 5.95 Total: 8.86 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -6.02 Total: -123.85 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -0.10 Total: -59.55 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -78.69 1.43 -77.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283543147.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.673 kcal (2) G-P(sol) polarization free energy of solvation -78.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds