Wall clock time and date at job start Tue Mar 31 2020 18:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34779 * 119.99728 * 2 1 4 4 O 1.21279 * 119.99504 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99924 * 359.97438 * 3 2 1 6 6 H 1.08997 * 115.55330 * 34.33201 * 5 3 2 7 7 C 1.52997 * 117.51636 * 248.62494 * 5 3 2 8 8 C 1.52995 * 60.00020 * 252.52172 * 7 5 3 9 9 C 1.52996 * 138.58372 * 130.89198 * 8 7 5 10 10 C 1.52988 * 138.58963 * 229.10174 * 8 7 5 11 11 C 1.46498 * 119.99767 * 179.97438 * 2 1 3 12 12 H 1.09005 * 109.46833 * 180.02562 * 11 2 1 13 13 C 1.52995 * 109.47582 * 299.99788 * 11 2 1 14 14 N 1.46903 * 109.47364 * 305.00633 * 13 11 2 15 15 C 1.46899 * 111.00175 * 180.02562 * 14 13 11 16 16 C 1.50695 * 109.46893 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00596 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00055 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00476 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99718 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00310 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99991 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00170 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47137 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47459 * 119.99685 * 23 21 19 26 26 H 1.48502 * 109.46976 * 239.99675 * 23 21 19 27 27 C 1.52998 * 109.47228 * 60.00388 * 11 2 1 28 28 C 1.53005 * 117.49834 * 248.61854 * 27 11 2 29 29 C 1.52992 * 59.99944 * 252.50643 * 28 27 11 30 30 H 1.09000 * 109.47109 * 90.00118 * 1 2 3 31 31 H 1.09009 * 109.47012 * 210.00323 * 1 2 3 32 32 H 1.09004 * 109.47102 * 329.99622 * 1 2 3 33 33 H 1.09002 * 117.49910 * 145.03310 * 7 5 3 34 34 H 1.09002 * 117.50186 * 0.02562 * 7 5 3 35 35 H 1.09005 * 117.49608 * 238.37836 * 9 8 7 36 36 H 1.08994 * 117.50371 * 23.40458 * 9 8 7 37 37 H 1.08997 * 117.50291 * 336.60812 * 10 8 7 38 38 H 1.09008 * 117.49609 * 121.62296 * 10 8 7 39 39 H 1.09010 * 109.46973 * 64.99984 * 13 11 2 40 40 H 1.08993 * 109.47535 * 184.99735 * 13 11 2 41 41 H 1.00896 * 110.99989 * 56.03913 * 14 13 11 42 42 H 1.09000 * 109.46900 * 299.99077 * 15 14 13 43 43 H 1.08992 * 109.47311 * 59.99668 * 15 14 13 44 44 H 0.97005 * 119.99904 * 359.97438 * 18 16 15 45 45 H 0.96996 * 119.99974 * 180.02562 * 22 21 19 46 46 H 1.08998 * 115.55110 * 34.31869 * 27 11 2 47 47 H 1.09001 * 117.49408 * 359.97438 * 28 27 11 48 48 H 1.08995 * 117.49804 * 145.01296 * 28 27 11 49 49 H 1.08997 * 117.50149 * 252.50792 * 29 28 27 50 50 H 1.09003 * 117.49964 * 107.48782 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.4468 2.4735 0.5537 7 6 1.4606 3.3314 -1.2643 8 6 2.2074 3.7626 -0.0005 9 6 3.6072 4.2313 0.4014 10 6 2.3765 5.0154 0.8612 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0695 0.0009 13 6 1.8280 -2.0705 1.2501 14 7 2.0713 -1.2531 2.4462 15 6 1.7274 -1.9925 3.6681 16 6 1.9903 -1.1241 4.8713 17 8 2.4220 -0.0001 4.7255 18 7 1.7456 -1.5965 6.1097 19 6 1.9842 -0.8064 7.2044 20 1 2.3686 0.1945 7.0745 21 6 1.7324 -1.2936 8.4811 22 7 1.2650 -2.5116 8.6392 23 14 2.0568 -0.2168 9.9726 24 1 2.5767 1.1013 9.5278 25 1 0.7925 -0.0218 10.7268 26 1 3.0596 -0.8740 10.8488 27 6 1.8279 -2.0715 -1.2483 28 6 1.0140 -3.3519 -1.0499 29 6 2.4928 -3.4371 -1.4328 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 0.5716 3.8979 -1.5415 34 1 2.0550 2.9526 -2.0958 35 1 4.1387 3.6444 1.1505 36 1 4.2294 4.6800 -0.3729 37 1 2.1889 5.9799 0.3894 38 1 2.0983 4.9443 1.9127 39 1 0.7741 -2.3459 1.2066 40 1 2.4376 -2.9728 1.2964 41 1 1.5667 -0.3808 2.3968 42 1 0.6731 -2.2677 3.6416 43 1 2.3368 -2.8939 3.7309 44 1 1.3999 -2.4953 6.2264 45 1 1.0889 -2.8516 9.5304 46 1 1.6301 -1.4829 -2.1441 47 1 0.7423 -3.6224 -0.0296 48 1 0.2805 -3.6056 -1.8152 49 1 2.7323 -3.7469 -2.4500 50 1 3.1937 -3.7635 -0.6645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283543149.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:19 Heat of formation + Delta-G solvation = 30.581815 kcal Electronic energy + Delta-G solvation = -29484.875195 eV Core-core repulsion = 25515.580683 eV Total energy + Delta-G solvation = -3969.294513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46750 -38.80615 -38.10191 -37.19042 -35.45423 -34.57288 -33.74427 -32.65330 -31.20512 -29.59670 -27.14625 -26.33051 -24.65433 -23.70284 -23.00544 -22.40034 -22.35963 -20.58413 -19.46041 -19.00167 -18.48584 -17.86106 -17.36824 -16.70364 -16.16765 -15.69080 -15.57378 -15.10894 -15.04535 -14.91033 -14.47499 -14.25874 -14.02522 -13.90546 -13.51289 -13.16989 -13.04205 -12.71028 -12.61209 -12.33589 -12.21170 -11.86849 -11.75533 -11.69145 -11.51881 -11.47104 -11.35365 -11.26807 -11.02744 -10.67549 -10.32935 -10.28810 -10.21967 -10.20587 -10.11799 -10.04387 -9.53619 -9.50066 -8.76129 -8.37912 -7.99724 -7.92952 -6.40188 -3.80695 2.53559 2.79656 3.17469 3.27880 3.35595 3.60083 3.62761 3.70330 3.93006 4.07641 4.20022 4.28602 4.48536 4.60722 4.70860 4.73632 4.79104 4.87905 5.00862 5.04685 5.05214 5.20561 5.25841 5.30227 5.34208 5.39503 5.44966 5.47319 5.51533 5.58660 5.60142 5.63902 5.65336 5.68977 5.77662 5.79548 5.91235 5.91994 5.95256 5.98506 6.04285 6.21635 6.28438 6.52461 7.23615 7.36281 7.57153 7.68752 8.08655 8.27164 8.63577 9.20096 9.56329 10.08318 10.77766 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009196 B = 0.003221 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.065340 B = 8689.808054 C =11151.258608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.607 5.607 3 C 0.547 3.453 4 O -0.521 6.521 5 C -0.140 4.140 6 H 0.124 0.876 7 C -0.102 4.102 8 C -0.200 4.200 9 C -0.112 4.112 10 C -0.130 4.130 11 C 0.174 3.826 12 H 0.113 0.887 13 C 0.048 3.952 14 N -0.663 5.663 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.580 6.580 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.160 4.160 28 C -0.185 4.185 29 C -0.171 4.171 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.034 0.966 40 H 0.081 0.919 41 H 0.348 0.652 42 H 0.041 0.959 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.270 0.730 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 2.975 -22.405 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.340 5.340 3 C 0.335 3.665 4 O -0.396 6.396 5 C -0.161 4.161 6 H 0.142 0.858 7 C -0.139 4.139 8 C -0.200 4.200 9 C -0.149 4.149 10 C -0.167 4.167 11 C 0.071 3.929 12 H 0.131 0.869 13 C -0.083 4.083 14 N -0.296 5.296 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.463 6.463 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.180 4.180 28 C -0.222 4.222 29 C -0.209 4.209 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.052 0.948 40 H 0.100 0.900 41 H 0.169 0.831 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.391 3.490 -22.270 22.796 hybrid contribution -1.356 -0.368 0.908 1.673 sum -4.747 3.122 -21.363 22.105 Atomic orbital electron populations 1.21789 0.79878 1.03207 1.01763 1.47690 1.06676 1.05471 1.74204 1.19608 0.87399 0.83980 0.75473 1.90699 1.13681 1.86846 1.48335 1.21990 1.00922 0.89089 1.04086 0.85798 1.22620 1.01305 0.99831 0.90115 1.21127 1.01774 0.95997 1.01137 1.22612 0.89054 1.00814 1.02433 1.22775 1.01668 0.93044 0.99185 1.20568 0.98822 0.82019 0.91516 0.86877 1.22449 0.98953 0.96783 0.90092 1.59948 1.63535 1.06588 0.99538 1.21676 0.98790 0.97396 0.90297 1.19811 0.84898 0.88596 0.84079 1.90540 1.49680 1.20432 1.85677 1.41864 1.57532 1.16375 1.04405 1.19756 1.40501 0.98822 0.83617 0.87913 1.25252 0.97185 0.96469 0.99071 1.69621 1.45158 1.15761 1.23895 0.85809 0.77924 0.79957 0.80718 1.19209 1.20787 1.20733 1.22615 1.05639 0.90128 0.99596 1.23176 0.94409 1.01430 1.03184 1.22959 0.95825 0.99254 1.02854 0.92534 0.91163 0.90886 0.87812 0.88348 0.87815 0.88736 0.88508 0.88250 0.94849 0.90035 0.83148 0.94131 0.89623 0.77518 0.91970 0.87576 0.87974 0.88996 0.88754 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 9.62 59.85 0.58 1.24 16 2 N -0.61 -7.23 1.83 -173.93 -0.32 -7.55 16 3 C 0.55 7.89 7.46 -10.99 -0.08 7.81 16 4 O -0.52 -9.57 15.57 5.56 0.09 -9.48 16 5 C -0.14 -1.65 5.29 -91.78 -0.49 -2.13 16 6 H 0.12 1.26 6.44 -51.93 -0.33 0.93 16 7 C -0.10 -0.97 10.23 -26.74 -0.27 -1.25 16 8 C -0.20 -2.41 5.05 -154.52 -0.78 -3.19 16 9 C -0.11 -1.40 10.16 -26.73 -0.27 -1.67 16 10 C -0.13 -1.39 10.53 -26.74 -0.28 -1.68 16 11 C 0.17 2.12 2.74 -67.94 -0.19 1.94 16 12 H 0.11 1.74 6.90 -51.93 -0.36 1.38 16 13 C 0.05 0.60 3.61 -3.83 -0.01 0.59 16 14 N -0.66 -11.47 6.12 -115.06 -0.70 -12.18 16 15 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 16 C 0.44 10.76 7.82 -10.99 -0.09 10.67 16 17 O -0.58 -16.40 15.78 5.55 0.09 -16.31 16 18 N -0.56 -14.60 5.29 -10.96 -0.06 -14.66 16 19 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 20 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 23 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C -0.16 -1.50 5.49 -90.62 -0.50 -2.00 16 28 C -0.19 -1.47 9.58 -26.73 -0.26 -1.73 16 29 C -0.17 -1.44 9.94 -26.74 -0.27 -1.71 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.59 6.53 -51.92 -0.34 0.25 16 32 H 0.07 0.59 6.00 -51.93 -0.31 0.27 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 39 H 0.03 0.37 5.35 -51.92 -0.28 0.10 16 40 H 0.08 0.99 7.44 -51.93 -0.39 0.60 16 41 H 0.35 6.41 7.56 -39.29 -0.30 6.12 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.10 0.84 5.80 -51.93 -0.30 0.54 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.10 0.86 7.66 -51.93 -0.40 0.46 16 LS Contribution 408.11 15.07 6.15 6.15 Total: -1.00 -34.35 408.11 -10.14 -44.49 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -7.91 Total: 17.60 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -3.18 Total: -0.29 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.36 Total: -58.46 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: 0.17 Total: -25.79 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.35 -10.14 -44.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283543149.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.071 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds