Wall clock time and date at job start Tue Mar 31 2020 18:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34779 * 119.99728 * 2 1 4 4 O 1.21279 * 119.99504 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99924 * 359.97438 * 3 2 1 6 6 H 1.08997 * 115.55330 * 34.33201 * 5 3 2 7 7 C 1.52997 * 117.51636 * 248.62494 * 5 3 2 8 8 C 1.52995 * 60.00020 * 252.52172 * 7 5 3 9 9 C 1.52996 * 138.58372 * 130.89198 * 8 7 5 10 10 C 1.52988 * 138.58963 * 229.10174 * 8 7 5 11 11 C 1.46498 * 119.99767 * 179.97438 * 2 1 3 12 12 H 1.09005 * 109.46833 * 180.02562 * 11 2 1 13 13 C 1.52995 * 109.47582 * 299.99788 * 11 2 1 14 14 N 1.46903 * 109.47364 * 305.00633 * 13 11 2 15 15 C 1.46899 * 111.00175 * 180.02562 * 14 13 11 16 16 C 1.50695 * 109.46893 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00596 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00055 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00476 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99718 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00310 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99991 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00170 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47137 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47459 * 119.99685 * 23 21 19 26 26 H 1.48502 * 109.46976 * 239.99675 * 23 21 19 27 27 C 1.52998 * 109.47228 * 60.00388 * 11 2 1 28 28 C 1.53005 * 117.49834 * 248.61854 * 27 11 2 29 29 C 1.52992 * 59.99944 * 252.50643 * 28 27 11 30 30 H 1.09000 * 109.47109 * 90.00118 * 1 2 3 31 31 H 1.09009 * 109.47012 * 210.00323 * 1 2 3 32 32 H 1.09004 * 109.47102 * 329.99622 * 1 2 3 33 33 H 1.09002 * 117.49910 * 145.03310 * 7 5 3 34 34 H 1.09002 * 117.50186 * 0.02562 * 7 5 3 35 35 H 1.09005 * 117.49608 * 238.37836 * 9 8 7 36 36 H 1.08994 * 117.50371 * 23.40458 * 9 8 7 37 37 H 1.08997 * 117.50291 * 336.60812 * 10 8 7 38 38 H 1.09008 * 117.49609 * 121.62296 * 10 8 7 39 39 H 1.09010 * 109.46973 * 64.99984 * 13 11 2 40 40 H 1.08993 * 109.47535 * 184.99735 * 13 11 2 41 41 H 1.00896 * 110.99989 * 56.03913 * 14 13 11 42 42 H 1.09000 * 109.46900 * 299.99077 * 15 14 13 43 43 H 1.08992 * 109.47311 * 59.99668 * 15 14 13 44 44 H 0.97005 * 119.99904 * 359.97438 * 18 16 15 45 45 H 0.96996 * 119.99974 * 180.02562 * 22 21 19 46 46 H 1.08998 * 115.55110 * 34.31869 * 27 11 2 47 47 H 1.09001 * 117.49408 * 359.97438 * 28 27 11 48 48 H 1.08995 * 117.49804 * 145.01296 * 28 27 11 49 49 H 1.08997 * 117.50149 * 252.50792 * 29 28 27 50 50 H 1.09003 * 117.49964 * 107.48782 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.4468 2.4735 0.5537 7 6 1.4606 3.3314 -1.2643 8 6 2.2074 3.7626 -0.0005 9 6 3.6072 4.2313 0.4014 10 6 2.3765 5.0154 0.8612 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0695 0.0009 13 6 1.8280 -2.0705 1.2501 14 7 2.0713 -1.2531 2.4462 15 6 1.7274 -1.9925 3.6681 16 6 1.9903 -1.1241 4.8713 17 8 2.4220 -0.0001 4.7255 18 7 1.7456 -1.5965 6.1097 19 6 1.9842 -0.8064 7.2044 20 1 2.3686 0.1945 7.0745 21 6 1.7324 -1.2936 8.4811 22 7 1.2650 -2.5116 8.6392 23 14 2.0568 -0.2168 9.9726 24 1 2.5767 1.1013 9.5278 25 1 0.7925 -0.0218 10.7268 26 1 3.0596 -0.8740 10.8488 27 6 1.8279 -2.0715 -1.2483 28 6 1.0140 -3.3519 -1.0499 29 6 2.4928 -3.4371 -1.4328 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 0.5716 3.8979 -1.5415 34 1 2.0550 2.9526 -2.0958 35 1 4.1387 3.6444 1.1505 36 1 4.2294 4.6800 -0.3729 37 1 2.1889 5.9799 0.3894 38 1 2.0983 4.9443 1.9127 39 1 0.7741 -2.3459 1.2066 40 1 2.4376 -2.9728 1.2964 41 1 1.5667 -0.3808 2.3968 42 1 0.6731 -2.2677 3.6416 43 1 2.3368 -2.8939 3.7309 44 1 1.3999 -2.4953 6.2264 45 1 1.0889 -2.8516 9.5304 46 1 1.6301 -1.4829 -2.1441 47 1 0.7423 -3.6224 -0.0296 48 1 0.2805 -3.6056 -1.8152 49 1 2.7323 -3.7469 -2.4500 50 1 3.1937 -3.7635 -0.6645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283543149.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:18 Heat of formation + Delta-G solvation = 7.881332 kcal Electronic energy + Delta-G solvation = -29485.859562 eV Core-core repulsion = 25515.580683 eV Total energy + Delta-G solvation = -3970.278879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.46519 -40.21034 -39.52335 -38.13701 -36.60006 -36.02076 -35.52110 -33.56292 -33.28964 -30.72447 -28.34646 -27.53215 -26.23615 -24.87383 -23.94956 -23.31746 -23.11526 -21.48563 -21.13989 -20.15888 -19.87728 -19.45652 -18.36665 -17.98930 -17.30621 -17.15153 -16.71574 -16.44222 -16.20007 -15.93178 -15.90420 -15.71502 -15.26448 -15.11012 -14.89407 -14.42859 -14.21601 -13.87777 -13.55676 -13.51614 -13.42318 -13.27078 -13.08888 -12.97310 -12.72392 -12.60683 -12.44270 -12.39283 -12.24605 -12.17813 -12.12756 -11.54581 -11.38486 -11.17372 -11.07391 -10.94011 -10.91478 -10.57955 -10.41291 -10.04353 -9.68565 -9.28150 -8.49503 -5.98319 1.34300 1.39791 1.50731 1.54111 1.89010 2.01245 2.26975 2.72797 2.78513 2.81460 2.97119 3.17393 3.32708 3.43658 3.61470 3.81250 3.86226 3.90607 4.03166 4.05490 4.11963 4.19239 4.24413 4.30429 4.43390 4.46074 4.49939 4.52981 4.59878 4.64451 4.71840 4.72950 4.77821 4.81752 4.83433 4.93328 4.94710 4.98810 5.05457 5.07842 5.20231 5.25049 5.29967 5.38362 5.60820 5.84988 6.07063 6.29388 6.41053 6.57424 7.10024 7.23191 7.52479 8.08782 8.68104 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009196 B = 0.003221 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.065340 B = 8689.808054 C =11151.258608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.602 5.602 3 C 0.536 3.464 4 O -0.577 6.577 5 C -0.153 4.153 6 H 0.141 0.859 7 C -0.069 4.069 8 C -0.228 4.228 9 C -0.134 4.134 10 C -0.111 4.111 11 C 0.177 3.823 12 H 0.072 0.928 13 C 0.053 3.947 14 N -0.686 5.686 15 C 0.067 3.933 16 C 0.435 3.565 17 O -0.626 6.626 18 N -0.570 5.570 19 C -0.335 4.335 20 H 0.075 0.925 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.992 3.008 24 H -0.276 1.276 25 H -0.267 1.267 26 H -0.270 1.270 27 C -0.165 4.165 28 C -0.166 4.166 29 C -0.175 4.175 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.340 0.660 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.109 0.891 47 H 0.103 0.897 48 H 0.110 0.890 49 H 0.107 0.893 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.493 2.277 -23.509 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.334 5.334 3 C 0.325 3.675 4 O -0.456 6.456 5 C -0.173 4.173 6 H 0.159 0.841 7 C -0.106 4.106 8 C -0.229 4.229 9 C -0.171 4.171 10 C -0.147 4.147 11 C 0.073 3.927 12 H 0.090 0.910 13 C -0.076 4.076 14 N -0.319 5.319 15 C -0.065 4.065 16 C 0.222 3.778 17 O -0.512 6.512 18 N -0.207 5.207 19 C -0.464 4.464 20 H 0.093 0.907 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.816 3.184 24 H -0.201 1.201 25 H -0.192 1.192 26 H -0.195 1.195 27 C -0.184 4.184 28 C -0.203 4.203 29 C -0.212 4.212 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.157 0.843 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.158 0.842 42 H 0.089 0.911 43 H 0.122 0.878 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.127 0.873 47 H 0.121 0.879 48 H 0.129 0.871 49 H 0.125 0.875 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.973 2.727 -23.387 24.291 hybrid contribution -0.544 -0.212 1.236 1.367 sum -6.517 2.515 -22.151 23.226 Atomic orbital electron populations 1.22039 0.77517 1.03900 1.03623 1.47781 1.08095 1.04713 1.72789 1.20187 0.87044 0.85509 0.74746 1.90670 1.16041 1.87707 1.51163 1.22089 1.01101 0.87731 1.06404 0.84132 1.22741 1.01522 0.97735 0.88560 1.21434 1.01132 0.96710 1.03624 1.22521 0.89951 1.02046 1.02592 1.22801 0.99382 0.93820 0.98730 1.20420 0.96787 0.82602 0.92873 0.91027 1.22526 1.00648 0.96270 0.88196 1.59919 1.64277 1.06972 1.00723 1.21535 1.00919 0.96267 0.87824 1.20910 0.83036 0.88616 0.85207 1.90512 1.51374 1.22831 1.86515 1.41904 1.57880 1.16371 1.04593 1.19673 1.42806 0.98583 0.85384 0.90700 1.26018 0.96197 0.97746 1.01073 1.69669 1.44656 1.16539 1.25049 0.84889 0.78443 0.77846 0.77259 1.20072 1.19207 1.19544 1.22414 1.07485 0.90398 0.98136 1.23228 0.94236 0.99031 1.03791 1.23045 0.96426 0.98251 1.03485 0.89996 0.90492 0.90201 0.84298 0.88636 0.91564 0.87414 0.85585 0.89269 0.92138 0.89326 0.84156 0.91067 0.87825 0.76881 0.91204 0.87278 0.87892 0.87133 0.87491 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 9.62 127.77 1.23 2.31 16 2 N -0.60 -14.19 1.83 -822.58 -1.51 -15.70 16 3 C 0.54 16.02 7.46 87.66 0.65 16.67 16 4 O -0.58 -22.91 15.57 -3.03 -0.05 -22.96 16 5 C -0.15 -3.54 5.29 -11.54 -0.06 -3.60 16 6 H 0.14 2.70 6.44 -2.39 -0.02 2.68 16 7 C -0.07 -1.19 10.23 30.59 0.31 -0.87 16 8 C -0.23 -5.51 5.05 -52.19 -0.26 -5.77 16 9 C -0.13 -3.58 10.16 30.59 0.31 -3.27 16 10 C -0.11 -2.36 10.53 30.59 0.32 -2.04 16 11 C 0.18 4.32 2.74 44.99 0.12 4.44 16 12 H 0.07 2.36 6.90 -2.38 -0.02 2.35 16 13 C 0.05 1.28 3.61 86.30 0.31 1.59 16 14 N -0.69 -23.77 6.12 -517.95 -3.17 -26.94 16 15 C 0.07 2.38 6.17 85.56 0.53 2.91 16 16 C 0.43 21.65 7.82 87.66 0.69 22.34 16 17 O -0.63 -36.95 15.78 -3.06 -0.05 -37.00 16 18 N -0.57 -30.01 5.29 -306.99 -1.62 -31.63 16 19 C -0.33 -19.53 9.68 84.04 0.81 -18.71 16 20 H 0.07 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 22 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 23 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 C -0.16 -2.84 5.49 -10.79 -0.06 -2.90 16 28 C -0.17 -2.12 9.58 30.59 0.29 -1.83 16 29 C -0.17 -2.63 9.94 30.59 0.30 -2.33 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.08 6.53 -2.38 -0.02 1.06 16 32 H 0.08 1.12 6.00 -2.38 -0.01 1.10 16 33 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.06 1.17 5.35 -2.38 -0.01 1.15 16 40 H 0.09 2.03 7.44 -2.39 -0.02 2.01 16 41 H 0.34 12.71 7.56 -89.70 -0.68 12.03 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 44 H 0.40 19.63 7.90 -92.70 -0.73 18.90 16 45 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 46 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.10 1.32 5.80 -2.39 -0.01 1.31 16 48 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 49 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.09 1.52 7.66 -2.39 -0.02 1.50 16 Total: -1.00 -79.23 408.11 1.45 -77.78 By element: Atomic # 1 Polarization: 51.93 SS G_CDS: -0.44 Total: 51.50 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 5.97 Total: 8.83 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -6.02 Total: -123.82 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: -0.10 Total: -59.95 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -79.23 1.45 -77.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283543149.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.663 kcal (2) G-P(sol) polarization free energy of solvation -79.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds