Wall clock time and date at job start Tue Mar 31 2020 18:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00125 * 2 1 4 4 C 1.46905 * 110.99927 * 123.95369 * 2 1 3 5 5 C 1.52998 * 109.47196 * 169.99933 * 4 2 1 6 6 C 1.50702 * 109.46840 * 179.97438 * 5 4 2 7 7 C 1.38358 * 119.85463 * 90.00232 * 6 5 4 8 8 C 1.37954 * 120.14888 * 179.97438 * 7 6 5 9 9 C 1.39574 * 119.84837 * 0.02562 * 8 7 6 10 10 C 1.47849 * 120.14153 * 179.97438 * 9 8 7 11 11 O 1.21559 * 120.00244 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99969 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99681 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47085 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.46812 * 64.99732 * 14 13 12 16 16 C 1.52997 * 109.47452 * 184.99949 * 14 13 12 17 17 O 1.42906 * 109.47007 * 54.99567 * 16 14 13 18 18 N 1.46506 * 109.46831 * 305.00177 * 14 13 12 19 19 C 1.36936 * 119.99838 * 154.99889 * 18 14 13 20 20 H 1.07999 * 120.00085 * 0.02562 * 19 18 14 21 21 C 1.38815 * 119.99824 * 179.97438 * 19 18 14 22 22 N 1.31616 * 119.99954 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99939 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47253 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47172 * 120.00068 * 23 21 19 26 26 H 1.48495 * 109.47215 * 240.00215 * 23 21 19 27 27 C 1.39571 * 119.71661 * 0.25048 * 9 8 7 28 28 C 1.37957 * 119.85020 * 359.47200 * 27 9 8 29 29 H 1.09000 * 109.47218 * 296.04467 * 1 2 3 30 30 H 1.08999 * 109.46956 * 56.04873 * 1 2 3 31 31 H 1.09001 * 109.47224 * 176.04951 * 1 2 3 32 32 H 1.09002 * 109.47061 * 183.95446 * 3 2 1 33 33 H 1.09001 * 109.47263 * 303.95263 * 3 2 1 34 34 H 1.09006 * 109.47224 * 63.95291 * 3 2 1 35 35 H 1.09001 * 109.47449 * 49.99405 * 4 2 1 36 36 H 1.09008 * 109.46976 * 289.99957 * 4 2 1 37 37 H 1.08998 * 109.46843 * 60.00197 * 5 4 2 38 38 H 1.08994 * 109.47214 * 299.99969 * 5 4 2 39 39 H 1.08008 * 119.92297 * 359.97438 * 7 6 5 40 40 H 1.08000 * 120.07715 * 179.97438 * 8 7 6 41 41 H 0.96998 * 120.00301 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.47818 * 59.99929 * 13 12 10 43 43 H 1.09001 * 109.47363 * 299.99334 * 13 12 10 44 44 H 1.08998 * 109.47192 * 174.99730 * 16 14 13 45 45 H 1.09000 * 109.46875 * 295.00133 * 16 14 13 46 46 H 0.96700 * 113.99791 * 179.97438 * 17 16 14 47 47 H 0.97000 * 119.99812 * 334.99233 * 18 14 13 48 48 H 0.97000 * 120.00432 * 179.97438 * 22 21 19 49 49 H 1.08001 * 120.07330 * 179.72333 * 27 9 8 50 50 H 1.07999 * 119.93083 * 180.27169 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9704 6 6 4.0445 -1.7407 2.1378 7 6 4.0968 -3.1218 2.0737 8 6 4.5905 -3.8466 3.1386 9 6 5.0373 -3.1836 4.2826 10 6 5.5671 -3.9540 5.4279 11 8 5.6139 -5.1676 5.3746 12 7 5.9973 -3.3109 6.5315 13 6 6.5218 -4.0744 7.6665 14 6 6.9373 -3.1114 8.7805 15 1 6.0562 -2.5957 9.1623 16 6 7.5991 -3.8978 9.9139 17 8 8.6845 -4.6658 9.3903 18 7 7.8857 -2.1296 8.2487 19 6 8.0117 -0.9049 8.8482 20 1 7.4122 -0.6630 9.7134 21 6 8.9107 0.0252 8.3446 22 7 9.6416 -0.2698 7.2906 23 14 9.0820 1.6961 9.1621 24 1 8.1551 1.7784 10.3193 25 1 10.4787 1.8756 9.6335 26 1 8.7489 2.7623 8.1836 27 6 4.9764 -1.7905 4.3432 28 6 4.4858 -1.0773 3.2690 29 1 -0.3634 0.4512 0.9233 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0828 1.3431 -0.0709 33 1 1.5898 1.9163 -0.8524 34 1 1.7043 1.8723 0.9233 35 1 1.5089 -1.7407 1.1758 36 1 1.7975 -0.2247 2.0629 37 1 3.9908 0.0193 0.9324 38 1 3.7023 -1.4966 0.0453 39 1 3.7503 -3.6335 1.1879 40 1 4.6305 -4.9247 3.0874 41 1 5.9597 -2.3426 6.5742 42 1 7.3871 -4.6544 7.3456 43 1 5.7503 -4.7485 8.0386 44 1 7.9745 -3.2042 10.6664 45 1 6.8673 -4.5657 10.3682 46 1 9.1516 -5.1906 10.0548 47 1 8.4244 -2.3470 7.4719 48 1 10.2695 0.3803 6.9384 49 1 5.3164 -1.2719 5.2274 50 1 4.4422 0.0009 3.3128 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283804788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:17 Heat of formation + Delta-G solvation = -72.260297 kcal Electronic energy + Delta-G solvation = -28415.006328 eV Core-core repulsion = 24441.252246 eV Total energy + Delta-G solvation = -3973.754081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.27362 -39.83774 -38.63904 -38.23508 -36.42092 -35.27474 -34.21824 -33.13564 -31.91221 -30.49664 -29.66935 -28.45339 -26.94298 -25.78640 -25.43435 -23.62218 -23.26531 -21.88673 -21.63497 -21.06178 -19.53922 -18.81035 -18.17209 -17.44523 -16.97830 -16.73917 -16.42995 -16.22504 -15.99787 -15.94276 -15.66700 -15.52690 -15.30502 -15.01883 -14.80182 -14.58321 -14.46434 -14.10835 -14.00411 -13.85266 -13.60546 -13.22737 -13.06437 -12.84268 -12.78592 -12.67760 -12.66190 -12.44664 -12.24353 -12.17247 -12.12699 -11.87638 -11.74056 -11.64077 -11.12546 -10.92777 -10.72845 -10.14233 -9.96692 -9.68493 -9.31954 -9.01512 -7.90070 -5.19820 -0.17723 0.40445 1.49057 1.50531 1.59394 1.81831 2.22113 2.57323 2.82392 3.03820 3.41999 3.60172 3.70339 3.78699 3.88767 3.96125 4.01361 4.02721 4.10310 4.22585 4.33180 4.41908 4.42310 4.48374 4.51719 4.54641 4.59637 4.63433 4.71253 4.75708 4.83403 4.87173 4.93968 4.98739 5.02746 5.04120 5.08881 5.19672 5.20852 5.32228 5.38402 5.47169 5.55261 5.58888 5.92040 6.06335 6.09307 6.28204 6.53574 7.06128 7.16721 7.36366 8.07870 8.33949 9.32782 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010501 B = 0.002632 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.775211 B =10635.754562 C =12709.826135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.559 5.559 3 C 0.017 3.983 4 C 0.063 3.937 5 C -0.072 4.072 6 C -0.052 4.052 7 C -0.120 4.120 8 C -0.068 4.068 9 C -0.155 4.155 10 C 0.549 3.451 11 O -0.586 6.586 12 N -0.706 5.706 13 C 0.128 3.872 14 C 0.161 3.839 15 H 0.080 0.920 16 C 0.065 3.935 17 O -0.585 6.585 18 N -0.723 5.723 19 C -0.235 4.235 20 H 0.082 0.918 21 C -0.071 4.071 22 N -0.966 5.966 23 Si 0.968 3.032 24 H -0.264 1.264 25 H -0.302 1.302 26 H -0.295 1.295 27 C -0.085 4.085 28 C -0.126 4.126 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.024 0.976 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.156 0.844 40 H 0.131 0.869 41 H 0.409 0.591 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.066 0.934 46 H 0.385 0.615 47 H 0.372 0.628 48 H 0.248 0.752 49 H 0.125 0.875 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.969 -0.906 -10.711 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.283 5.283 3 C -0.131 4.131 4 C -0.065 4.065 5 C -0.110 4.110 6 C -0.053 4.053 7 C -0.138 4.138 8 C -0.087 4.087 9 C -0.158 4.158 10 C 0.338 3.662 11 O -0.468 6.468 12 N -0.356 5.356 13 C 0.004 3.996 14 C 0.051 3.949 15 H 0.098 0.902 16 C -0.016 4.016 17 O -0.391 6.391 18 N -0.362 5.362 19 C -0.367 4.367 20 H 0.100 0.900 21 C -0.263 4.263 22 N -0.616 5.616 23 Si 0.798 3.202 24 H -0.188 1.188 25 H -0.230 1.230 26 H -0.222 1.222 27 C -0.104 4.104 28 C -0.144 4.144 29 H 0.043 0.957 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.043 0.957 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.173 0.827 40 H 0.149 0.851 41 H 0.247 0.753 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.233 0.767 47 H 0.204 0.796 48 H 0.057 0.943 49 H 0.143 0.857 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.025 -1.541 -11.559 21.469 hybrid contribution 0.875 1.318 1.779 2.380 sum -17.151 -0.223 -9.780 19.744 Atomic orbital electron populations 1.22428 0.86456 1.02810 1.00857 1.62012 1.08724 1.14540 1.42988 1.22510 1.01441 0.88341 1.00820 1.22070 0.94513 0.98640 0.91255 1.20614 0.94729 1.00228 0.95423 1.20251 0.95739 0.93964 0.95298 1.21270 1.00081 0.93511 0.98904 1.21338 0.94927 1.00749 0.91709 1.19933 1.06001 0.94225 0.95672 1.18726 0.77296 0.87072 0.83063 1.90689 1.58483 1.15081 1.82577 1.45923 1.62437 1.11504 1.15781 1.21429 0.98023 0.94018 0.86135 1.20862 0.92661 0.89199 0.92143 0.90181 1.22868 0.88836 0.93545 0.96329 1.86529 1.48751 1.63806 1.40035 1.42492 1.46134 1.12619 1.34998 1.19643 1.17097 0.90958 1.09007 0.90014 1.25484 0.99679 1.02022 0.99148 1.69854 1.29079 1.36023 1.26656 0.85155 0.76847 0.80335 0.77856 1.18808 1.23002 1.22213 1.21450 0.96862 0.92521 0.99572 1.21214 0.99479 1.00938 0.92723 0.95747 0.90444 0.90887 0.90729 0.90576 0.95718 0.90296 0.95023 0.90070 0.89054 0.82675 0.85148 0.75321 0.93067 0.90274 0.94355 0.91585 0.76653 0.79642 0.94287 0.85704 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.57 127.69 1.22 1.48 16 2 N -0.56 -7.97 5.02 -948.84 -4.76 -12.73 16 3 C 0.02 0.21 9.32 127.69 1.19 1.40 16 4 C 0.06 0.93 4.94 86.30 0.43 1.35 16 5 C -0.07 -1.09 5.26 29.85 0.16 -0.93 16 6 C -0.05 -1.02 5.14 -19.81 -0.10 -1.12 16 7 C -0.12 -2.48 9.68 22.23 0.22 -2.27 16 8 C -0.07 -1.85 9.60 22.52 0.22 -1.63 16 9 C -0.16 -4.88 5.87 -20.09 -0.12 -5.00 16 10 C 0.55 20.50 7.77 86.79 0.67 21.18 16 11 O -0.59 -24.99 16.35 -3.90 -0.06 -25.05 16 12 N -0.71 -25.62 5.34 -465.95 -2.49 -28.11 16 13 C 0.13 4.67 5.12 86.38 0.44 5.11 16 14 C 0.16 5.97 2.84 44.99 0.13 6.09 16 15 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 16 C 0.07 2.14 6.86 71.98 0.49 2.63 16 17 O -0.58 -20.50 12.64 -148.98 -1.88 -22.38 16 18 N -0.72 -34.33 4.51 -322.92 -1.46 -35.78 16 19 C -0.24 -12.12 9.93 84.03 0.83 -11.28 16 20 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 21 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 22 N -0.97 -57.71 13.06 21.65 0.28 -57.43 16 23 Si 0.97 44.31 29.55 68.60 2.03 46.33 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 27 C -0.09 -2.40 9.54 22.52 0.21 -2.19 16 28 C -0.13 -2.88 9.68 22.23 0.22 -2.66 16 29 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.08 0.75 8.12 -2.39 -0.02 0.73 16 31 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 32 H 0.07 0.90 6.47 -2.39 -0.02 0.88 16 33 H 0.08 0.81 8.12 -2.39 -0.02 0.79 16 34 H 0.02 0.32 8.14 -2.38 -0.02 0.30 16 35 H 0.08 1.13 8.06 -2.39 -0.02 1.11 16 36 H 0.03 0.51 8.12 -2.38 -0.02 0.49 16 37 H 0.08 1.16 6.49 -2.39 -0.02 1.14 16 38 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 39 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.13 3.56 7.65 -2.91 -0.02 3.54 16 41 H 0.41 14.73 6.17 -92.71 -0.57 14.15 16 42 H 0.05 2.15 7.39 -2.39 -0.02 2.13 16 43 H 0.08 2.59 8.14 -2.39 -0.02 2.58 16 44 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.39 9.46 9.12 -74.06 -0.68 8.78 16 47 H 0.37 20.18 7.80 -92.71 -0.72 19.46 16 48 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 49 H 0.13 3.62 6.41 -2.91 -0.02 3.60 16 50 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -70.17 411.58 -2.68 -72.85 By element: Atomic # 1 Polarization: 54.56 SS G_CDS: -1.01 Total: 53.54 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 6.68 Total: 8.76 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -8.42 Total: -134.05 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -1.95 Total: -47.44 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -70.17 -2.68 -72.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283804788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.590 kcal (2) G-P(sol) polarization free energy of solvation -70.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds