Wall clock time and date at job start Tue Mar 31 2020 18:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46891 * 111.00287 * 2 1 4 4 C 1.46902 * 110.99854 * 123.95581 * 2 1 3 5 5 C 1.53007 * 109.47222 * 170.00047 * 4 2 1 6 6 C 1.50699 * 109.47181 * 180.02562 * 5 4 2 7 7 C 1.38353 * 119.85511 * 89.99956 * 6 5 4 8 8 C 1.37961 * 120.14588 * 179.97438 * 7 6 5 9 9 C 1.39579 * 119.84987 * 0.02562 * 8 7 6 10 10 C 1.47849 * 120.14237 * 179.97438 * 9 8 7 11 11 O 1.21547 * 120.00018 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99723 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99874 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47349 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.46953 * 295.00895 * 14 13 12 16 16 C 1.52996 * 109.47332 * 175.00381 * 14 13 12 17 17 O 1.42906 * 109.46885 * 305.00176 * 16 14 13 18 18 N 1.46505 * 109.46807 * 55.00436 * 14 13 12 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 14 13 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 14 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 14 22 22 N 1.31617 * 119.99873 * 180.27450 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 0.27770 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99559 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00079 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99901 * 23 21 19 27 27 C 1.39577 * 119.71232 * 0.25252 * 9 8 7 28 28 C 1.37962 * 119.85298 * 359.46888 * 27 9 8 29 29 H 1.08998 * 109.46864 * 296.04580 * 1 2 3 30 30 H 1.08999 * 109.47251 * 56.04744 * 1 2 3 31 31 H 1.09005 * 109.47139 * 176.05100 * 1 2 3 32 32 H 1.08998 * 109.47469 * 183.95244 * 3 2 1 33 33 H 1.08996 * 109.47248 * 303.95471 * 3 2 1 34 34 H 1.08997 * 109.47241 * 63.95147 * 3 2 1 35 35 H 1.08997 * 109.47663 * 50.00119 * 4 2 1 36 36 H 1.08999 * 109.47539 * 289.99399 * 4 2 1 37 37 H 1.08991 * 109.47124 * 59.99325 * 5 4 2 38 38 H 1.09007 * 109.46453 * 299.99789 * 5 4 2 39 39 H 1.08000 * 119.93083 * 0.02562 * 7 6 5 40 40 H 1.07991 * 120.07686 * 179.97438 * 8 7 6 41 41 H 0.97000 * 120.00108 * 359.97438 * 12 10 9 42 42 H 1.09009 * 109.46721 * 60.00549 * 13 12 10 43 43 H 1.09000 * 109.47501 * 300.00847 * 13 12 10 44 44 H 1.08998 * 109.47306 * 65.00267 * 16 14 13 45 45 H 1.08990 * 109.47060 * 185.00303 * 16 14 13 46 46 H 0.96701 * 113.99874 * 179.97438 * 17 16 14 47 47 H 0.97000 * 119.99792 * 24.99795 * 18 14 13 48 48 H 0.97000 * 120.00553 * 180.02562 * 22 21 19 49 49 H 1.08003 * 120.07415 * 179.72919 * 27 9 8 50 50 H 1.07994 * 119.93057 * 180.27875 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9704 6 6 4.0444 -1.7418 2.1371 7 6 4.0966 -3.1228 2.0717 8 6 4.5902 -3.8486 3.1360 9 6 5.0370 -3.1867 4.2808 10 6 5.5667 -3.9581 5.4254 11 8 5.6133 -5.1715 5.3710 12 7 5.9978 -3.3159 6.5291 13 6 6.5222 -4.0803 7.6635 14 6 6.9389 -3.1183 8.7779 15 1 7.7711 -2.5036 8.4349 16 6 7.3694 -3.9190 10.0085 17 8 6.3189 -4.8102 10.3883 18 7 5.8069 -2.2564 9.1275 19 6 6.0299 -1.0267 9.6871 20 1 7.0403 -0.6920 9.8703 21 6 4.9575 -0.2078 10.0131 22 7 5.1720 0.9764 10.5460 23 14 3.2100 -0.7864 9.6956 24 1 2.7025 -1.5073 10.8906 25 1 2.3425 0.3868 9.4197 26 1 3.1959 -1.6989 8.5241 27 6 4.9761 -1.7936 4.3425 28 6 4.4856 -1.0794 3.2688 29 1 -0.3633 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3634 -1.0253 -0.0708 32 1 3.0828 1.3431 -0.0708 33 1 1.5898 1.9162 -0.8524 34 1 1.7044 1.8723 0.9232 35 1 1.5090 -1.7407 1.1756 36 1 1.7976 -0.2249 2.0628 37 1 3.9909 0.0192 0.9323 38 1 3.7023 -1.4967 0.0451 39 1 3.7509 -3.6338 1.1852 40 1 4.6300 -4.9265 3.0840 41 1 5.9609 -2.3476 6.5723 42 1 7.3870 -4.6607 7.3418 43 1 5.7504 -4.7542 8.0355 44 1 8.2656 -4.4931 9.7731 45 1 7.5812 -3.2356 10.8307 46 1 6.5231 -5.3514 11.1632 47 1 4.8995 -2.5570 8.9626 48 1 4.4227 1.5486 10.7742 49 1 5.3162 -1.2756 5.2271 50 1 4.4422 -0.0013 3.3135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283804789.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:20 Heat of formation + Delta-G solvation = -69.886983 kcal Electronic energy + Delta-G solvation = -28595.290579 eV Core-core repulsion = 24621.639413 eV Total energy + Delta-G solvation = -3973.651167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31618 -39.88083 -38.73203 -38.26691 -36.49131 -35.34236 -34.24799 -33.37783 -31.96742 -30.85223 -29.86267 -28.47632 -26.98639 -25.69978 -25.22987 -23.64817 -23.28631 -21.91810 -21.71877 -21.10986 -19.97965 -18.84991 -18.30502 -17.47380 -16.99582 -16.76736 -16.47378 -16.22594 -16.20509 -15.97228 -15.69483 -15.57216 -15.20084 -15.04931 -14.80894 -14.62115 -14.51975 -14.27434 -14.13602 -14.02837 -13.77990 -13.28176 -13.20721 -12.89548 -12.85905 -12.70147 -12.64580 -12.46919 -12.38198 -12.19514 -12.15471 -11.91417 -11.80462 -11.66055 -11.17914 -10.97850 -10.76135 -10.19237 -9.99348 -9.71968 -9.35364 -9.35248 -8.02714 -5.34945 -0.20902 0.37807 1.34977 1.39439 1.43594 1.78570 2.16329 2.46076 2.78997 3.01910 3.29085 3.43471 3.66485 3.67723 3.76445 3.90224 3.97375 3.99235 4.07313 4.20597 4.30757 4.35769 4.39656 4.45858 4.49453 4.50432 4.59053 4.61324 4.69411 4.73567 4.77258 4.84296 4.91387 4.95669 5.00138 5.01942 5.07108 5.13890 5.18021 5.29034 5.35272 5.42681 5.57067 5.76747 5.89472 6.03133 6.06415 6.20785 6.48061 7.01315 7.07177 7.12198 7.81240 8.00516 9.18098 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010817 B = 0.002866 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.012133 B = 9766.928654 C =11606.955961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.556 5.556 3 C 0.017 3.983 4 C 0.060 3.940 5 C -0.071 4.071 6 C -0.052 4.052 7 C -0.119 4.119 8 C -0.067 4.067 9 C -0.157 4.157 10 C 0.551 3.449 11 O -0.581 6.581 12 N -0.712 5.712 13 C 0.126 3.874 14 C 0.165 3.835 15 H 0.082 0.918 16 C 0.066 3.934 17 O -0.584 6.584 18 N -0.741 5.741 19 C -0.221 4.221 20 H 0.070 0.930 21 C -0.051 4.051 22 N -0.977 5.977 23 Si 0.941 3.059 24 H -0.290 1.290 25 H -0.296 1.296 26 H -0.261 1.261 27 C -0.089 4.089 28 C -0.126 4.126 29 H 0.021 0.979 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.022 0.978 35 H 0.077 0.923 36 H 0.027 0.973 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.155 0.845 40 H 0.132 0.868 41 H 0.409 0.591 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.037 0.963 46 H 0.388 0.612 47 H 0.362 0.638 48 H 0.256 0.744 49 H 0.127 0.873 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 -4.987 -21.360 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.280 5.280 3 C -0.131 4.131 4 C -0.068 4.068 5 C -0.109 4.109 6 C -0.053 4.053 7 C -0.137 4.137 8 C -0.086 4.086 9 C -0.160 4.160 10 C 0.340 3.660 11 O -0.464 6.464 12 N -0.363 5.363 13 C 0.001 3.999 14 C 0.057 3.943 15 H 0.100 0.900 16 C -0.015 4.015 17 O -0.391 6.391 18 N -0.384 5.384 19 C -0.352 4.352 20 H 0.088 0.912 21 C -0.243 4.243 22 N -0.628 5.628 23 Si 0.771 3.229 24 H -0.217 1.217 25 H -0.223 1.223 26 H -0.186 1.186 27 C -0.107 4.107 28 C -0.144 4.144 29 H 0.040 0.960 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.173 0.827 40 H 0.149 0.851 41 H 0.247 0.753 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.055 0.945 46 H 0.237 0.763 47 H 0.195 0.805 48 H 0.066 0.934 49 H 0.145 0.855 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.949 -5.595 -22.235 23.117 hybrid contribution -1.087 0.597 1.995 2.349 sum -4.035 -4.998 -20.240 21.235 Atomic orbital electron populations 1.22435 0.86623 1.02792 1.00796 1.62032 1.08590 1.14585 1.42803 1.22519 1.01608 0.88267 1.00750 1.22096 0.94953 0.98552 0.91191 1.20612 0.94324 1.00390 0.95543 1.20259 0.95628 0.94005 0.95362 1.21278 0.99934 0.93471 0.99024 1.21343 0.94827 1.00769 0.91661 1.19943 1.06256 0.94180 0.95592 1.18688 0.77170 0.87077 0.83057 1.90698 1.57965 1.14955 1.82739 1.45979 1.63218 1.11569 1.15515 1.21492 0.99409 0.93961 0.85000 1.20837 0.91262 0.90422 0.91820 0.89977 1.22789 0.89565 0.91709 0.97398 1.86466 1.43848 1.56536 1.52267 1.42719 1.03912 1.16507 1.75240 1.19021 0.93779 0.91413 1.30947 0.91240 1.25233 1.00760 0.96450 1.01825 1.69835 1.31209 1.11174 1.50562 0.85628 0.82047 0.76911 0.78353 1.21726 1.22296 1.18600 1.21485 0.97350 0.92584 0.99327 1.21237 0.99423 1.01028 0.92720 0.96028 0.90292 0.90920 0.90364 0.90509 0.95982 0.90482 0.95422 0.89783 0.88802 0.82703 0.85052 0.75322 0.89837 0.92229 0.91220 0.94498 0.76333 0.80481 0.93443 0.85502 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.57 127.69 1.22 1.49 16 2 N -0.56 -8.06 5.02 -948.88 -4.76 -12.82 16 3 C 0.02 0.21 9.32 127.69 1.19 1.40 16 4 C 0.06 0.91 4.94 86.31 0.43 1.33 16 5 C -0.07 -0.98 5.26 29.85 0.16 -0.82 16 6 C -0.05 -0.94 5.14 -19.81 -0.10 -1.04 16 7 C -0.12 -2.26 9.68 22.23 0.22 -2.04 16 8 C -0.07 -1.67 9.60 22.53 0.22 -1.45 16 9 C -0.16 -4.53 5.87 -20.09 -0.12 -4.65 16 10 C 0.55 18.90 7.77 86.79 0.67 19.58 16 11 O -0.58 -23.03 16.35 -3.86 -0.06 -23.09 16 12 N -0.71 -23.59 5.34 -465.96 -2.49 -26.07 16 13 C 0.13 4.15 5.12 86.38 0.44 4.59 16 14 C 0.17 5.77 2.84 44.99 0.13 5.90 16 15 H 0.08 2.76 8.08 -2.39 -0.02 2.74 16 16 C 0.07 2.04 6.86 71.98 0.49 2.54 16 17 O -0.58 -18.39 12.64 -148.98 -1.88 -20.28 16 18 N -0.74 -32.48 4.31 -322.93 -1.39 -33.87 16 19 C -0.22 -11.65 10.41 84.04 0.87 -10.77 16 20 H 0.07 3.94 8.06 -2.91 -0.02 3.91 16 21 C -0.05 -2.85 5.50 84.86 0.47 -2.39 16 22 N -0.98 -60.11 13.97 21.65 0.30 -59.81 16 23 Si 0.94 45.50 27.74 68.60 1.90 47.41 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 26 H -0.26 -11.76 6.51 99.48 0.65 -11.11 16 27 C -0.09 -2.30 9.54 22.53 0.21 -2.08 16 28 C -0.13 -2.67 9.68 22.23 0.22 -2.45 16 29 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.08 0.82 8.12 -2.39 -0.02 0.80 16 31 H 0.07 0.85 8.12 -2.38 -0.02 0.83 16 32 H 0.08 0.87 6.47 -2.39 -0.02 0.85 16 33 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 34 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.08 1.16 8.06 -2.39 -0.02 1.14 16 36 H 0.03 0.48 8.12 -2.39 -0.02 0.46 16 37 H 0.08 1.05 6.49 -2.39 -0.02 1.03 16 38 H 0.09 1.15 8.08 -2.38 -0.02 1.13 16 39 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.13 3.29 7.65 -2.92 -0.02 3.27 16 41 H 0.41 13.35 6.17 -92.71 -0.57 12.78 16 42 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 43 H 0.06 2.21 7.39 -2.39 -0.02 2.19 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.39 8.34 9.12 -74.06 -0.68 7.66 16 47 H 0.36 16.50 5.66 -92.71 -0.52 15.98 16 48 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 49 H 0.13 3.33 6.41 -2.91 -0.02 3.31 16 50 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -71.49 408.46 -2.54 -74.03 By element: Atomic # 1 Polarization: 46.25 SS G_CDS: -0.87 Total: 45.37 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.72 Total: 9.13 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -8.34 Total: -132.57 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -1.95 Total: -43.37 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.41 kcal Total: -71.49 -2.54 -74.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283804789.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.145 kcal (2) G-P(sol) polarization free energy of solvation -71.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds