Wall clock time and date at job start Tue Mar 31 2020 18:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00286 * 2 1 4 4 C 1.53007 * 109.47216 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46605 * 65.00347 * 4 3 2 6 6 C 1.36936 * 119.99983 * 274.46144 * 5 4 3 7 7 H 1.08000 * 119.99787 * 146.17315 * 6 5 4 8 8 C 1.38807 * 120.00055 * 326.17079 * 6 5 4 9 9 N 1.31625 * 119.99960 * 335.31536 * 8 6 5 10 10 Si 1.86797 * 120.00245 * 155.30899 * 8 6 5 11 11 H 1.48505 * 109.47091 * 89.99927 * 10 8 6 12 12 H 1.48495 * 109.47673 * 209.99985 * 10 8 6 13 13 H 1.48501 * 109.47181 * 330.00630 * 10 8 6 14 14 C 1.46504 * 119.99988 * 94.46468 * 5 4 3 15 15 C 1.53006 * 109.46755 * 269.99827 * 14 5 4 16 16 N 1.46504 * 109.46755 * 179.97438 * 15 14 5 17 17 C 1.34772 * 119.99761 * 179.97438 * 16 15 14 18 18 O 1.21623 * 120.00305 * 0.02562 * 17 16 15 19 19 C 1.47265 * 119.99780 * 179.97438 * 17 16 15 20 20 C 1.46743 * 126.92260 * 179.97438 * 19 17 16 21 21 C 1.34072 * 106.31095 * 179.97438 * 20 19 17 22 22 N 1.37083 * 109.04213 * 0.02996 * 21 20 19 23 23 C 1.34579 * 109.94705 * 359.71315 * 22 21 20 24 24 C 1.47028 * 123.95618 * 179.89670 * 22 21 20 25 25 C 1.53149 * 108.83630 * 342.45738 * 24 22 21 26 26 C 1.53130 * 109.59037 * 51.20865 * 25 24 22 27 27 C 1.51088 * 126.72902 * 180.02562 * 21 20 19 28 28 H 1.08997 * 109.47742 * 300.00487 * 1 2 3 29 29 H 1.09002 * 109.46874 * 60.00159 * 1 2 3 30 30 H 1.08998 * 109.47427 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46949 * 59.99645 * 3 2 1 32 32 H 1.08991 * 109.47230 * 299.99822 * 3 2 1 33 33 H 1.08996 * 109.47356 * 305.00777 * 4 3 2 34 34 H 1.09000 * 109.47010 * 184.99874 * 4 3 2 35 35 H 0.96999 * 119.99894 * 180.02562 * 9 8 6 36 36 H 1.08993 * 109.46764 * 149.99898 * 14 5 4 37 37 H 1.08995 * 109.46850 * 29.99411 * 14 5 4 38 38 H 1.08994 * 109.46817 * 299.99897 * 15 14 5 39 39 H 1.08998 * 109.47056 * 60.00167 * 15 14 5 40 40 H 0.97001 * 119.99805 * 0.02562 * 16 15 14 41 41 H 1.07998 * 126.84614 * 359.95305 * 20 19 17 42 42 H 1.08001 * 125.72799 * 180.30832 * 23 22 21 43 43 H 1.09004 * 109.57933 * 102.26161 * 24 22 21 44 44 H 1.08994 * 109.57758 * 222.65028 * 24 22 21 45 45 H 1.08997 * 109.44947 * 171.24410 * 25 24 22 46 46 H 1.09004 * 109.44709 * 291.17368 * 25 24 22 47 47 H 1.08998 * 109.52440 * 49.73935 * 26 25 24 48 48 H 1.09004 * 109.52041 * 169.87354 * 26 25 24 49 49 H 1.09007 * 109.71621 * 283.90647 * 27 21 20 50 50 H 1.08996 * 109.72313 * 44.55099 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5639 -1.2510 6 6 4.0102 -0.8004 -1.3640 7 1 3.7919 -1.2692 -2.3122 8 6 4.3249 -1.5808 -0.2601 9 7 5.0414 -1.0745 0.7211 10 14 3.7314 -3.3495 -0.1668 11 1 4.7462 -4.2451 -0.7779 12 1 3.5279 -3.7292 1.2543 13 1 2.4483 -3.4806 -0.9028 14 6 4.3819 1.4028 -2.3816 15 6 3.1634 1.7014 -3.2575 16 7 3.5685 2.5408 -4.3878 17 6 2.6550 2.9316 -5.2984 18 8 1.4942 2.5879 -5.1815 19 6 3.0621 3.7759 -6.4342 20 6 2.2005 4.2854 -7.5073 21 6 2.9920 5.0037 -8.3167 22 7 4.2728 4.9771 -7.8287 23 6 4.3184 4.2479 -6.6985 24 6 5.4089 5.6587 -8.4663 25 6 5.0358 5.9934 -9.9135 26 6 3.6899 6.7233 -9.9411 27 6 2.5754 5.7364 -9.5706 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6885 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8508 0.5683 0.8426 34 1 3.9785 2.1764 0.0902 35 1 5.2616 -1.6199 1.4924 36 1 5.1339 0.8789 -2.9715 37 1 4.7992 2.3381 -2.0087 38 1 2.7460 0.7660 -3.6303 39 1 2.4114 2.2252 -2.6675 40 1 4.4944 2.8147 -4.4812 41 1 1.1402 4.1154 -7.6223 42 1 5.1996 4.0644 -6.1015 43 1 5.6338 6.5778 -7.9252 44 1 6.2802 5.0040 -8.4559 45 1 5.8044 6.6327 -10.3478 46 1 4.9611 5.0722 -10.4913 47 1 3.7052 7.5429 -9.2227 48 1 3.5103 7.1183 -10.9410 49 1 2.4302 5.0233 -10.3822 50 1 1.6485 6.2802 -9.3880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284667012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:24 Heat of formation + Delta-G solvation = -15.528447 kcal Electronic energy + Delta-G solvation = -28916.472976 eV Core-core repulsion = 24945.178973 eV Total energy + Delta-G solvation = -3971.294004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.67114 -38.87456 -37.16229 -36.15087 -35.59861 -33.96837 -32.98199 -31.37002 -30.10811 -29.07765 -27.76184 -27.15939 -25.53450 -24.80908 -23.79566 -22.58946 -21.90144 -21.29678 -20.33386 -19.44495 -18.78434 -17.40600 -16.70904 -16.23968 -15.80608 -15.69985 -15.25577 -14.91053 -14.76594 -14.61337 -14.49994 -14.17060 -14.09161 -13.87178 -13.86263 -13.46406 -13.34178 -13.16954 -12.66306 -12.53599 -12.29384 -11.88766 -11.78397 -11.71301 -11.55482 -11.38237 -11.22764 -11.09122 -10.77416 -10.69259 -10.57133 -10.46600 -9.95916 -9.89798 -9.63708 -9.55408 -8.74965 -8.65640 -8.46408 -8.32758 -8.20473 -6.55209 -5.65726 -3.17924 1.79570 2.35954 2.59368 3.49848 3.57341 3.64403 3.70184 3.86214 4.04877 4.19122 4.26053 4.49852 4.66318 4.73386 4.80484 4.82724 4.89958 5.00948 5.20504 5.21657 5.29410 5.39508 5.45087 5.46677 5.56408 5.63026 5.70043 5.87249 5.87865 5.92818 5.97811 6.02390 6.07100 6.19387 6.25583 6.38353 6.40992 6.66443 6.72072 6.72564 6.80469 6.85797 6.94486 7.06618 7.11681 7.73776 7.95546 8.00788 8.20283 8.62223 8.73790 9.28153 9.94422 10.45185 11.35835 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019574 B = 0.002244 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.160159 B =12472.112840 C =13037.709541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.046 3.954 4 C 0.137 3.863 5 N -0.571 5.571 6 C -0.242 4.242 7 H 0.058 0.942 8 C 0.021 3.979 9 N -0.891 5.891 10 Si 0.898 3.102 11 H -0.292 1.292 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.138 3.862 15 C 0.098 3.902 16 N -0.725 5.725 17 C 0.583 3.417 18 O -0.551 6.551 19 C -0.220 4.220 20 C -0.137 4.137 21 C 0.007 3.993 22 N -0.442 5.442 23 C 0.045 3.955 24 C 0.101 3.899 25 C -0.134 4.134 26 C -0.125 4.125 27 C -0.050 4.050 28 H 0.025 0.975 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.022 0.978 32 H 0.030 0.970 33 H 0.108 0.892 34 H 0.040 0.960 35 H 0.252 0.748 36 H 0.054 0.946 37 H 0.037 0.963 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.392 0.608 41 H 0.146 0.854 42 H 0.169 0.831 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 17.779 -18.749 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.291 5.291 6 C -0.371 4.371 7 H 0.076 0.924 8 C -0.178 4.178 9 N -0.535 5.535 10 Si 0.728 3.272 11 H -0.220 1.220 12 H -0.218 1.218 13 H -0.203 1.203 14 C 0.011 3.989 15 C -0.027 4.027 16 N -0.375 5.375 17 C 0.370 3.630 18 O -0.429 6.429 19 C -0.230 4.230 20 C -0.161 4.161 21 C -0.101 4.101 22 N -0.119 5.119 23 C -0.089 4.089 24 C -0.020 4.020 25 C -0.172 4.172 26 C -0.163 4.163 27 C -0.088 4.088 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.125 0.875 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.225 0.775 41 H 0.163 0.837 42 H 0.186 0.814 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.558 17.425 -18.632 25.516 hybrid contribution -0.192 -0.538 0.195 0.604 sum 0.366 16.886 -18.437 25.004 Atomic orbital electron populations 1.22634 0.84379 1.01407 0.98431 1.88226 1.16426 1.27445 1.94795 1.23457 0.98643 0.84319 0.96881 1.21159 0.87934 0.96497 0.93380 1.43588 1.74092 1.02383 1.09021 1.18813 1.40643 0.80744 0.96911 0.92446 1.24868 0.97002 0.97646 0.98301 1.69973 1.36494 1.36698 1.10299 0.86387 0.79086 0.84938 0.76777 1.21976 1.21753 1.20285 1.21001 0.92877 0.94635 0.90425 1.22407 1.00364 0.93708 0.86261 1.45942 1.11361 1.53411 1.26803 1.17421 0.85242 0.79209 0.81104 1.90751 1.18583 1.57290 1.76295 1.20538 0.93547 1.08631 1.00308 1.21542 0.99004 1.01037 0.94551 1.20274 0.83769 1.06267 0.99779 1.43856 1.07896 1.39956 1.20184 1.21788 0.98905 0.97962 0.90254 1.22077 0.87847 0.97811 0.94244 1.21848 0.98564 1.01953 0.94815 1.21641 0.93992 0.98151 1.02479 1.20340 0.98669 0.96941 0.92873 0.95662 0.95140 0.90832 0.95942 0.95212 0.87495 0.94156 0.93819 0.92775 0.94430 0.91697 0.92497 0.77503 0.83659 0.81394 0.89965 0.89214 0.89631 0.90658 0.91338 0.90644 0.90191 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.35 -8.27 9.96 -35.23 -0.35 -8.62 16 3 C 0.05 0.99 6.28 37.16 0.23 1.22 16 4 C 0.14 3.22 5.83 -4.04 -0.02 3.19 16 5 N -0.57 -14.04 2.45 -173.23 -0.43 -14.47 16 6 C -0.24 -6.68 8.74 -15.06 -0.13 -6.81 16 7 H 0.06 1.62 7.94 -52.49 -0.42 1.20 16 8 C 0.02 0.60 4.95 -17.43 -0.09 0.51 16 9 N -0.89 -25.83 11.36 55.49 0.63 -25.20 16 10 Si 0.90 22.84 29.62 -169.99 -5.03 17.80 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 14 C 0.14 2.79 5.82 -4.04 -0.02 2.77 16 15 C 0.10 1.91 6.00 -4.04 -0.02 1.88 16 16 N -0.72 -11.63 5.55 -61.43 -0.34 -11.97 16 17 C 0.58 10.32 7.81 -12.59 -0.10 10.22 16 18 O -0.55 -12.12 16.97 5.26 0.09 -12.03 16 19 C -0.22 -3.15 6.29 -103.32 -0.65 -3.80 16 20 C -0.14 -1.83 10.88 -37.61 -0.41 -2.24 16 21 C 0.01 0.07 6.53 -81.52 -0.53 -0.46 16 22 N -0.44 -4.11 3.11 -111.86 -0.35 -4.46 16 23 C 0.05 0.49 10.90 -16.87 -0.18 0.30 16 24 C 0.10 0.55 6.89 -3.68 -0.03 0.53 16 25 C -0.13 -0.58 5.91 -26.59 -0.16 -0.74 16 26 C -0.12 -0.60 5.96 -26.45 -0.16 -0.76 16 27 C -0.05 -0.34 6.26 -27.48 -0.17 -0.52 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.03 0.63 6.47 -51.93 -0.34 0.29 16 33 H 0.11 2.89 5.37 -51.93 -0.28 2.61 16 34 H 0.04 0.85 7.84 -51.93 -0.41 0.44 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 37 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 38 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.06 1.18 6.47 -51.93 -0.34 0.85 16 40 H 0.39 4.93 7.41 -40.82 -0.30 4.62 16 41 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 42 H 0.17 1.30 7.45 -52.49 -0.39 0.91 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 47 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 48 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 403.41 15.07 6.08 6.08 Total: -1.00 -35.49 403.41 -9.37 -44.86 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.34 Total: 1.04 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -1.33 Total: 6.96 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.48 Total: -56.09 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.26 Total: -20.65 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.49 -9.37 -44.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284667012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.335 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds