Wall clock time and date at job start Tue Mar 31 2020 18:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00286 * 2 1 4 4 C 1.53007 * 109.47216 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46605 * 65.00347 * 4 3 2 6 6 C 1.36936 * 119.99983 * 274.46144 * 5 4 3 7 7 H 1.08000 * 119.99787 * 146.17315 * 6 5 4 8 8 C 1.38807 * 120.00055 * 326.17079 * 6 5 4 9 9 N 1.31625 * 119.99960 * 335.31536 * 8 6 5 10 10 Si 1.86797 * 120.00245 * 155.30899 * 8 6 5 11 11 H 1.48505 * 109.47091 * 89.99927 * 10 8 6 12 12 H 1.48495 * 109.47673 * 209.99985 * 10 8 6 13 13 H 1.48501 * 109.47181 * 330.00630 * 10 8 6 14 14 C 1.46504 * 119.99988 * 94.46468 * 5 4 3 15 15 C 1.53006 * 109.46755 * 269.99827 * 14 5 4 16 16 N 1.46504 * 109.46755 * 179.97438 * 15 14 5 17 17 C 1.34772 * 119.99761 * 179.97438 * 16 15 14 18 18 O 1.21623 * 120.00305 * 0.02562 * 17 16 15 19 19 C 1.47265 * 119.99780 * 179.97438 * 17 16 15 20 20 C 1.46743 * 126.92260 * 179.97438 * 19 17 16 21 21 C 1.34072 * 106.31095 * 179.97438 * 20 19 17 22 22 N 1.37083 * 109.04213 * 0.02996 * 21 20 19 23 23 C 1.34579 * 109.94705 * 359.71315 * 22 21 20 24 24 C 1.47028 * 123.95618 * 179.89670 * 22 21 20 25 25 C 1.53149 * 108.83630 * 342.45738 * 24 22 21 26 26 C 1.53130 * 109.59037 * 51.20865 * 25 24 22 27 27 C 1.51088 * 126.72902 * 180.02562 * 21 20 19 28 28 H 1.08997 * 109.47742 * 300.00487 * 1 2 3 29 29 H 1.09002 * 109.46874 * 60.00159 * 1 2 3 30 30 H 1.08998 * 109.47427 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46949 * 59.99645 * 3 2 1 32 32 H 1.08991 * 109.47230 * 299.99822 * 3 2 1 33 33 H 1.08996 * 109.47356 * 305.00777 * 4 3 2 34 34 H 1.09000 * 109.47010 * 184.99874 * 4 3 2 35 35 H 0.96999 * 119.99894 * 180.02562 * 9 8 6 36 36 H 1.08993 * 109.46764 * 149.99898 * 14 5 4 37 37 H 1.08995 * 109.46850 * 29.99411 * 14 5 4 38 38 H 1.08994 * 109.46817 * 299.99897 * 15 14 5 39 39 H 1.08998 * 109.47056 * 60.00167 * 15 14 5 40 40 H 0.97001 * 119.99805 * 0.02562 * 16 15 14 41 41 H 1.07998 * 126.84614 * 359.95305 * 20 19 17 42 42 H 1.08001 * 125.72799 * 180.30832 * 23 22 21 43 43 H 1.09004 * 109.57933 * 102.26161 * 24 22 21 44 44 H 1.08994 * 109.57758 * 222.65028 * 24 22 21 45 45 H 1.08997 * 109.44947 * 171.24410 * 25 24 22 46 46 H 1.09004 * 109.44709 * 291.17368 * 25 24 22 47 47 H 1.08998 * 109.52440 * 49.73935 * 26 25 24 48 48 H 1.09004 * 109.52041 * 169.87354 * 26 25 24 49 49 H 1.09007 * 109.71621 * 283.90647 * 27 21 20 50 50 H 1.08996 * 109.72313 * 44.55099 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5639 -1.2510 6 6 4.0102 -0.8004 -1.3640 7 1 3.7919 -1.2692 -2.3122 8 6 4.3249 -1.5808 -0.2601 9 7 5.0414 -1.0745 0.7211 10 14 3.7314 -3.3495 -0.1668 11 1 4.7462 -4.2451 -0.7779 12 1 3.5279 -3.7292 1.2543 13 1 2.4483 -3.4806 -0.9028 14 6 4.3819 1.4028 -2.3816 15 6 3.1634 1.7014 -3.2575 16 7 3.5685 2.5408 -4.3878 17 6 2.6550 2.9316 -5.2984 18 8 1.4942 2.5879 -5.1815 19 6 3.0621 3.7759 -6.4342 20 6 2.2005 4.2854 -7.5073 21 6 2.9920 5.0037 -8.3167 22 7 4.2728 4.9771 -7.8287 23 6 4.3184 4.2479 -6.6985 24 6 5.4089 5.6587 -8.4663 25 6 5.0358 5.9934 -9.9135 26 6 3.6899 6.7233 -9.9411 27 6 2.5754 5.7364 -9.5706 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6885 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8508 0.5683 0.8426 34 1 3.9785 2.1764 0.0902 35 1 5.2616 -1.6199 1.4924 36 1 5.1339 0.8789 -2.9715 37 1 4.7992 2.3381 -2.0087 38 1 2.7460 0.7660 -3.6303 39 1 2.4114 2.2252 -2.6675 40 1 4.4944 2.8147 -4.4812 41 1 1.1402 4.1154 -7.6223 42 1 5.1996 4.0644 -6.1015 43 1 5.6338 6.5778 -7.9252 44 1 6.2802 5.0040 -8.4559 45 1 5.8044 6.6327 -10.3478 46 1 4.9611 5.0722 -10.4913 47 1 3.7052 7.5429 -9.2227 48 1 3.5103 7.1183 -10.9410 49 1 2.4302 5.0233 -10.3822 50 1 1.6485 6.2802 -9.3880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284667012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:22 Heat of formation + Delta-G solvation = -38.869336 kcal Electronic energy + Delta-G solvation = -28917.485113 eV Core-core repulsion = 24945.178973 eV Total energy + Delta-G solvation = -3972.306140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.47938 -40.27069 -38.89835 -37.37805 -36.68355 -35.60769 -33.63800 -33.33709 -31.40661 -30.44245 -28.91581 -28.31750 -27.16435 -25.99583 -25.09945 -23.82034 -22.96764 -22.33084 -22.13672 -20.65295 -19.57402 -18.67139 -18.23851 -17.47916 -17.13742 -16.82363 -16.58989 -16.49682 -16.37837 -16.12552 -15.62805 -15.35222 -15.09273 -15.03699 -14.83095 -14.72027 -14.47018 -14.37509 -14.18874 -13.59328 -13.46626 -13.41546 -13.19995 -13.00962 -12.68638 -12.46959 -12.40962 -12.38759 -12.27926 -11.92590 -11.92439 -11.76697 -11.71092 -11.68528 -11.53489 -11.04255 -10.44486 -10.34730 -10.05243 -9.49291 -9.10784 -8.57717 -7.75756 -5.30271 0.78011 1.43680 1.45427 1.50259 1.61396 1.89425 2.31080 2.60553 2.62992 3.20741 3.37252 3.62108 3.72803 3.78372 3.84471 3.92640 4.11237 4.17534 4.24609 4.33587 4.41512 4.43047 4.50156 4.51284 4.56685 4.58112 4.60125 4.72345 4.73060 4.80272 4.86073 4.89966 4.91679 4.95828 4.98932 5.08059 5.12700 5.12891 5.19331 5.27755 5.33954 5.54171 5.73591 5.77897 5.84132 6.08510 6.36052 6.45826 6.66306 6.73468 7.23911 7.39865 7.93350 8.39786 9.21415 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019574 B = 0.002244 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.160159 B =12472.112840 C =13037.709541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.052 3.948 4 C 0.134 3.866 5 N -0.587 5.587 6 C -0.242 4.242 7 H 0.042 0.958 8 C -0.018 4.018 9 N -0.912 5.912 10 Si 0.943 3.057 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.285 1.285 14 C 0.145 3.855 15 C 0.121 3.879 16 N -0.710 5.710 17 C 0.580 3.420 18 O -0.607 6.607 19 C -0.263 4.263 20 C -0.178 4.178 21 C 0.020 3.980 22 N -0.435 5.435 23 C 0.070 3.930 24 C 0.091 3.909 25 C -0.132 4.132 26 C -0.122 4.122 27 C -0.053 4.053 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.249 0.751 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.042 0.958 40 H 0.412 0.588 41 H 0.129 0.871 42 H 0.203 0.797 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.094 0.906 49 H 0.087 0.913 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 20.058 -20.419 28.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.008 3.992 5 N -0.307 5.307 6 C -0.372 4.372 7 H 0.060 0.940 8 C -0.215 4.215 9 N -0.557 5.557 10 Si 0.772 3.228 11 H -0.212 1.212 12 H -0.219 1.219 13 H -0.211 1.211 14 C 0.018 3.982 15 C -0.006 4.006 16 N -0.361 5.361 17 C 0.370 3.630 18 O -0.490 6.490 19 C -0.274 4.274 20 C -0.202 4.202 21 C -0.089 4.089 22 N -0.111 5.111 23 C -0.067 4.067 24 C -0.028 4.028 25 C -0.170 4.170 26 C -0.159 4.159 27 C -0.091 4.091 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.249 0.751 41 H 0.147 0.853 42 H 0.220 0.780 43 H 0.118 0.882 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.112 0.888 49 H 0.105 0.895 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.373 19.744 -20.340 28.446 hybrid contribution -0.750 -1.145 0.603 1.495 sum 1.624 18.600 -19.737 27.169 Atomic orbital electron populations 1.22795 0.82071 1.02456 0.99777 1.88148 1.19125 1.28683 1.95112 1.23335 0.97285 0.83984 0.98024 1.21131 0.89440 0.96762 0.91845 1.43739 1.74582 1.01963 1.10375 1.18834 1.39589 0.82504 0.96281 0.93994 1.25325 0.97658 1.00131 0.98408 1.70059 1.37610 1.37439 1.10599 0.85684 0.78352 0.82376 0.76345 1.21234 1.21895 1.21074 1.21033 0.92835 0.95142 0.89228 1.21891 0.99560 0.92386 0.86782 1.45664 1.12313 1.52552 1.25592 1.17970 0.84499 0.78797 0.81688 1.90707 1.20949 1.59624 1.77711 1.20320 0.95753 1.10934 1.00367 1.21605 0.99003 1.03489 0.96106 1.20665 0.83829 1.04553 0.99858 1.44228 1.08625 1.38808 1.19426 1.22163 0.98350 0.95940 0.90276 1.22512 0.86800 0.98597 0.94872 1.21889 0.98935 1.02153 0.93984 1.21653 0.93385 0.97417 1.03488 1.20501 0.99841 0.97445 0.91334 0.93132 0.94822 0.90060 0.93441 0.95141 0.90694 0.91856 0.94173 0.92658 0.91559 0.95358 0.93927 0.75127 0.85334 0.78042 0.88212 0.87271 0.86978 0.91229 0.91413 0.88769 0.89469 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 11.01 113.37 1.25 2.19 16 2 O -0.39 -18.48 9.96 -148.98 -1.48 -19.97 16 3 C 0.05 2.23 6.28 71.98 0.45 2.68 16 4 C 0.13 6.28 5.83 86.38 0.50 6.78 16 5 N -0.59 -28.89 2.45 -701.99 -1.72 -30.61 16 6 C -0.24 -13.54 8.74 84.03 0.73 -12.81 16 7 H 0.04 2.44 7.94 -2.91 -0.02 2.42 16 8 C -0.02 -1.03 4.95 84.86 0.42 -0.61 16 9 N -0.91 -53.39 11.36 21.65 0.25 -53.14 16 10 Si 0.94 47.52 29.62 68.60 2.03 49.55 16 11 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 12 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 13 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 14 C 0.14 5.72 5.82 86.38 0.50 6.23 16 15 C 0.12 4.76 6.00 86.38 0.52 5.28 16 16 N -0.71 -22.67 5.55 -466.52 -2.59 -25.26 16 17 C 0.58 21.21 7.81 86.62 0.68 21.89 16 18 O -0.61 -28.39 16.97 -4.11 -0.07 -28.46 16 19 C -0.26 -7.61 6.29 -19.02 -0.12 -7.73 16 20 C -0.18 -4.92 10.88 23.54 0.26 -4.67 16 21 C 0.02 0.39 6.53 40.91 0.27 0.65 16 22 N -0.44 -6.92 3.11 -507.83 -1.58 -8.50 16 23 C 0.07 1.34 10.90 83.93 0.91 2.25 16 24 C 0.09 0.62 6.89 86.33 0.59 1.21 16 25 C -0.13 -0.60 5.91 30.69 0.18 -0.42 16 26 C -0.12 -0.77 5.96 30.77 0.18 -0.58 16 27 C -0.05 -0.63 6.26 30.11 0.19 -0.44 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.03 1.28 6.47 -2.39 -0.02 1.27 16 33 H 0.08 4.08 5.37 -2.39 -0.01 4.07 16 34 H 0.06 2.59 7.84 -2.39 -0.02 2.57 16 35 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 36 H 0.06 2.18 8.04 -2.39 -0.02 2.16 16 37 H 0.07 2.27 7.86 -2.39 -0.02 2.25 16 38 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.04 1.81 6.47 -2.39 -0.02 1.79 16 40 H 0.41 9.63 7.41 -92.71 -0.69 8.94 16 41 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 42 H 0.20 2.33 7.45 -2.91 -0.02 2.31 16 43 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.07 0.44 8.11 -2.39 -0.02 0.42 16 47 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16 48 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 50 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -80.89 403.41 2.60 -78.29 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.24 Total: 16.19 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 7.52 Total: 21.90 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -5.64 Total: -117.51 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -1.55 Total: -48.43 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -80.89 2.60 -78.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284667012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.423 kcal (2) G-P(sol) polarization free energy of solvation -80.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds