Wall clock time and date at job start Tue Mar 31 2020 18:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 110.99757 * 2 1 4 4 C 1.46898 * 111.00059 * 123.95471 * 2 1 3 5 5 C 1.50702 * 109.46827 * 169.99945 * 4 2 1 6 6 C 1.35130 * 125.61557 * 90.00535 * 5 4 2 7 7 C 1.40360 * 107.11634 * 180.02562 * 6 5 4 8 8 C 1.36544 * 106.70918 * 359.97438 * 7 6 5 9 9 C 1.46654 * 125.99293 * 179.97438 * 8 7 6 10 10 O 1.21699 * 119.99521 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00652 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00365 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47030 * 180.02562 * 12 11 9 14 14 C 1.53349 * 109.41694 * 295.12891 * 13 12 11 15 15 C 1.53194 * 109.14721 * 178.67625 * 14 13 12 16 16 N 1.46924 * 108.89447 * 54.57940 * 15 14 13 17 17 C 1.36930 * 120.63300 * 126.34039 * 16 15 14 18 18 H 1.07996 * 120.00049 * 331.82927 * 17 16 15 19 19 C 1.38816 * 120.00324 * 151.82723 * 17 16 15 20 20 N 1.31624 * 119.99356 * 343.06571 * 19 17 16 21 21 Si 1.86793 * 120.00395 * 163.06593 * 19 17 16 22 22 H 1.48500 * 109.46960 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47338 * 119.99948 * 21 19 17 24 24 H 1.48503 * 109.47085 * 239.99957 * 21 19 17 25 25 C 1.46929 * 118.73622 * 306.31812 * 16 15 14 26 26 C 1.53036 * 109.45564 * 175.00227 * 13 12 11 27 27 O 1.33928 * 125.61720 * 270.32000 * 5 4 2 28 28 H 1.08997 * 109.47002 * 296.04265 * 1 2 3 29 29 H 1.08993 * 109.47423 * 56.04366 * 1 2 3 30 30 H 1.09007 * 109.47264 * 176.04477 * 1 2 3 31 31 H 1.09006 * 109.46971 * 183.95695 * 3 2 1 32 32 H 1.09002 * 109.47264 * 303.95313 * 3 2 1 33 33 H 1.08999 * 109.47124 * 63.95492 * 3 2 1 34 34 H 1.09005 * 109.46942 * 50.00305 * 4 2 1 35 35 H 1.08995 * 109.47514 * 290.00072 * 4 2 1 36 36 H 1.08002 * 126.44142 * 0.02655 * 6 5 4 37 37 H 1.08006 * 126.64873 * 179.97438 * 7 6 5 38 38 H 0.96997 * 119.99597 * 0.02562 * 11 9 8 39 39 H 1.08994 * 109.46871 * 60.00166 * 12 11 9 40 40 H 1.09000 * 109.46959 * 300.00074 * 12 11 9 41 41 H 1.09000 * 109.45980 * 55.02905 * 13 12 11 42 42 H 1.08999 * 109.68685 * 58.71306 * 14 13 12 43 43 H 1.08997 * 109.47481 * 298.51196 * 14 13 12 44 44 H 1.08999 * 109.58554 * 294.71486 * 15 14 13 45 45 H 1.09001 * 109.58356 * 174.43691 * 15 14 13 46 46 H 0.96997 * 119.99488 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.58736 * 173.39352 * 25 16 15 48 48 H 1.08995 * 109.58640 * 293.68128 * 25 16 15 49 49 H 1.08993 * 109.50017 * 61.43810 * 26 13 12 50 50 H 1.08996 * 109.50185 * 301.33457 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4818 -0.9525 0.9727 6 6 4.4360 -0.1143 1.4343 7 6 5.6766 -0.6580 1.0662 8 6 5.4132 -1.8151 0.3907 9 6 6.4107 -2.7232 -0.1848 10 8 7.5964 -2.4698 -0.0800 11 7 6.0143 -3.8382 -0.8298 12 6 7.0108 -4.7450 -1.4052 13 6 6.3012 -5.9230 -2.0760 14 6 5.5641 -6.7465 -1.0130 15 6 4.8290 -7.9046 -1.6951 16 7 5.7916 -8.6733 -2.4959 17 6 5.9177 -10.0261 -2.3259 18 1 5.6943 -10.4732 -1.3686 19 6 6.3327 -10.8230 -3.3841 20 7 6.2856 -10.3593 -4.6150 21 14 6.9579 -12.5533 -3.0612 22 1 6.9115 -12.8324 -1.6034 23 1 6.1024 -13.5311 -3.7803 24 1 8.3576 -12.6719 -3.5430 25 6 6.6160 -7.9628 -3.4830 26 6 7.3334 -6.8038 -2.7836 27 8 4.0743 -1.9731 0.3395 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3634 -1.0253 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5897 1.9163 -0.8525 33 1 1.7043 1.8723 0.9233 34 1 1.5090 -1.7407 1.1755 35 1 1.7975 -0.2249 2.0628 36 1 4.2744 0.8016 1.9832 37 1 6.6508 -0.2418 1.2765 38 1 5.0693 -4.0399 -0.9136 39 1 7.6636 -5.1159 -0.6151 40 1 7.6047 -4.2095 -2.1458 41 1 5.5837 -5.5470 -2.8053 42 1 4.8441 -6.1146 -0.4930 43 1 6.2839 -7.1437 -0.2973 44 1 4.0470 -7.5096 -2.3437 45 1 4.3843 -8.5512 -0.9387 46 1 6.5752 -10.9162 -5.3544 47 1 7.3523 -8.6471 -3.9046 48 1 5.9801 -7.5747 -4.2787 49 1 8.0366 -7.2003 -2.0512 50 1 7.8725 -6.2109 -3.5224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293420219.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:41 Heat of formation + Delta-G solvation = 1.099601 kcal Electronic energy + Delta-G solvation = -28718.459178 eV Core-core repulsion = 24747.886221 eV Total energy + Delta-G solvation = -3970.572957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.97012 -39.60134 -37.91940 -37.74782 -35.06064 -33.41334 -32.83592 -31.40261 -30.71923 -29.72257 -28.10920 -27.85117 -26.47059 -24.21518 -23.13749 -22.30390 -22.04635 -21.50874 -20.99802 -20.32380 -19.18463 -18.34613 -16.87145 -16.73283 -16.34384 -15.96999 -15.66340 -15.64841 -14.97139 -14.85969 -14.53358 -14.10258 -13.93378 -13.55365 -13.47460 -13.37148 -13.26117 -13.21998 -13.13044 -12.84455 -12.36201 -12.33238 -12.28331 -12.15119 -11.91508 -11.88256 -11.32963 -10.98903 -10.72939 -10.50046 -10.42978 -10.27488 -10.21806 -10.17136 -9.89563 -9.54860 -9.43688 -9.18446 -9.00228 -8.69510 -8.45906 -6.65443 -5.77733 -3.19992 0.82399 2.00041 2.34847 3.09022 3.14026 3.37994 3.46027 3.48244 3.52090 4.20624 4.50640 4.51122 4.61106 4.68608 4.75938 4.85642 4.91194 5.09604 5.10149 5.13359 5.22269 5.37394 5.38985 5.41770 5.42338 5.48303 5.51863 5.59059 5.61699 5.85505 5.92072 6.04577 6.06397 6.13160 6.32906 6.33933 6.36671 6.41601 6.47052 6.60734 6.64320 6.70689 6.77415 6.82664 6.99593 7.37434 7.43788 7.67556 7.81294 8.01728 8.46825 9.23008 9.86536 10.43363 11.30845 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.002116 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.728412 B =13228.291746 C =14193.410400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.017 3.983 4 C 0.127 3.873 5 C 0.028 3.972 6 C -0.215 4.215 7 C -0.123 4.123 8 C -0.069 4.069 9 C 0.599 3.401 10 O -0.525 6.525 11 N -0.711 5.711 12 C 0.122 3.878 13 C -0.090 4.090 14 C -0.128 4.128 15 C 0.145 3.855 16 N -0.593 5.593 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.171 3.829 26 C -0.132 4.132 27 O -0.152 6.152 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.406 0.594 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.052 0.948 46 H 0.253 0.747 47 H 0.088 0.912 48 H 0.018 0.982 49 H 0.058 0.942 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.121 23.988 11.380 28.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.131 4.131 4 C 0.000 4.000 5 C -0.025 4.025 6 C -0.235 4.235 7 C -0.143 4.143 8 C -0.122 4.122 9 C 0.384 3.616 10 O -0.403 6.403 11 N -0.361 5.361 12 C -0.001 4.001 13 C -0.109 4.109 14 C -0.167 4.167 15 C 0.019 3.981 16 N -0.315 5.315 17 C -0.380 4.380 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.045 3.955 26 C -0.172 4.172 27 O -0.046 6.046 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.171 0.829 37 H 0.178 0.822 38 H 0.242 0.758 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.106 0.894 48 H 0.036 0.964 49 H 0.077 0.923 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.225 23.537 10.702 27.133 hybrid contribution -0.323 -0.358 0.833 0.962 sum -8.549 23.180 11.535 27.266 Atomic orbital electron populations 1.22415 0.85972 1.02959 1.00948 1.61896 1.08489 1.14458 1.42051 1.22533 1.01753 0.88092 1.00762 1.20580 0.86124 1.00456 0.92838 1.22463 0.95198 0.87938 0.96889 1.21563 0.91598 1.02595 1.07785 1.21906 0.99854 0.94056 0.98527 1.22182 0.80704 1.00454 1.08842 1.16561 0.86253 0.80364 0.78375 1.90881 1.15336 1.74264 1.59869 1.46032 1.11553 1.22811 1.55722 1.21694 0.90674 0.89976 0.97749 1.21379 0.98312 0.93661 0.97589 1.22138 0.99272 0.97895 0.97423 1.20881 0.91267 0.92014 0.93950 1.44059 1.40313 1.03856 1.43312 1.19221 1.41579 0.82457 0.94753 0.91723 1.25052 1.02015 0.97792 0.94911 1.70041 1.50259 1.36821 0.97645 0.86235 0.78440 0.84501 0.77683 1.20280 1.21765 1.21558 1.20769 0.94014 0.91063 0.89618 1.22172 0.97434 0.98143 0.99452 1.84031 1.18591 1.42534 1.59490 0.95276 0.90759 0.90791 0.90699 0.90972 0.95285 0.88347 0.91022 0.82915 0.82229 0.75845 0.91168 0.91353 0.91173 0.93418 0.92119 0.96576 0.92907 0.93704 0.89391 0.96391 0.92327 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.57 60.06 0.57 0.70 16 2 N -0.54 -3.93 5.01 -252.72 -1.27 -5.19 16 3 C 0.02 0.10 9.27 60.06 0.56 0.66 16 4 C 0.13 0.86 5.49 -4.98 -0.03 0.83 16 5 C 0.03 0.26 6.21 -35.41 -0.22 0.04 16 6 C -0.22 -1.88 9.36 -39.89 -0.37 -2.25 16 7 C -0.12 -1.34 10.62 -39.40 -0.42 -1.75 16 8 C -0.07 -0.87 7.13 -36.80 -0.26 -1.13 16 9 C 0.60 8.66 7.79 -12.86 -0.10 8.56 16 10 O -0.53 -9.06 16.87 5.19 0.09 -8.98 16 11 N -0.71 -9.50 5.27 -61.63 -0.32 -9.83 16 12 C 0.12 1.76 5.07 -4.04 -0.02 1.74 16 13 C -0.09 -1.44 2.19 -90.42 -0.20 -1.64 16 14 C -0.13 -2.13 5.27 -26.45 -0.14 -2.27 16 15 C 0.15 2.99 6.50 -3.71 -0.02 2.96 16 16 N -0.59 -14.72 2.99 -172.31 -0.52 -15.23 16 17 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 18 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 19 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 20 N -0.90 -26.20 11.20 55.49 0.62 -25.58 16 21 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 C 0.17 4.02 5.30 -3.70 -0.02 4.00 16 26 C -0.13 -2.45 5.36 -26.61 -0.14 -2.59 16 27 O -0.15 -1.77 10.40 4.99 0.05 -1.71 16 28 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 31 H 0.07 0.52 6.31 -51.93 -0.33 0.20 16 32 H 0.07 0.40 8.12 -51.93 -0.42 -0.03 16 33 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.10 0.61 8.06 -51.93 -0.42 0.19 16 35 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 36 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.41 4.88 7.41 -40.82 -0.30 4.58 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.68 7.16 -51.93 -0.37 0.30 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 50 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -32.05 401.42 -9.83 -41.88 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.46 Total: 1.11 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.04 Total: 0.78 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -1.49 Total: -55.84 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.14 Total: -10.69 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.05 -9.83 -41.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293420219.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.979 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds