Wall clock time and date at job start Tue Mar 31 2020 18:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 110.99757 * 2 1 4 4 C 1.46898 * 111.00059 * 123.95471 * 2 1 3 5 5 C 1.50702 * 109.46827 * 169.99945 * 4 2 1 6 6 C 1.35130 * 125.61557 * 90.00535 * 5 4 2 7 7 C 1.40360 * 107.11634 * 180.02562 * 6 5 4 8 8 C 1.36544 * 106.70918 * 359.97438 * 7 6 5 9 9 C 1.46654 * 125.99293 * 179.97438 * 8 7 6 10 10 O 1.21699 * 119.99521 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00652 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00365 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47030 * 180.02562 * 12 11 9 14 14 C 1.53349 * 109.41694 * 295.12891 * 13 12 11 15 15 C 1.53194 * 109.14721 * 178.67625 * 14 13 12 16 16 N 1.46924 * 108.89447 * 54.57940 * 15 14 13 17 17 C 1.36930 * 120.63300 * 126.34039 * 16 15 14 18 18 H 1.07996 * 120.00049 * 331.82927 * 17 16 15 19 19 C 1.38816 * 120.00324 * 151.82723 * 17 16 15 20 20 N 1.31624 * 119.99356 * 343.06571 * 19 17 16 21 21 Si 1.86793 * 120.00395 * 163.06593 * 19 17 16 22 22 H 1.48500 * 109.46960 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47338 * 119.99948 * 21 19 17 24 24 H 1.48503 * 109.47085 * 239.99957 * 21 19 17 25 25 C 1.46929 * 118.73622 * 306.31812 * 16 15 14 26 26 C 1.53036 * 109.45564 * 175.00227 * 13 12 11 27 27 O 1.33928 * 125.61720 * 270.32000 * 5 4 2 28 28 H 1.08997 * 109.47002 * 296.04265 * 1 2 3 29 29 H 1.08993 * 109.47423 * 56.04366 * 1 2 3 30 30 H 1.09007 * 109.47264 * 176.04477 * 1 2 3 31 31 H 1.09006 * 109.46971 * 183.95695 * 3 2 1 32 32 H 1.09002 * 109.47264 * 303.95313 * 3 2 1 33 33 H 1.08999 * 109.47124 * 63.95492 * 3 2 1 34 34 H 1.09005 * 109.46942 * 50.00305 * 4 2 1 35 35 H 1.08995 * 109.47514 * 290.00072 * 4 2 1 36 36 H 1.08002 * 126.44142 * 0.02655 * 6 5 4 37 37 H 1.08006 * 126.64873 * 179.97438 * 7 6 5 38 38 H 0.96997 * 119.99597 * 0.02562 * 11 9 8 39 39 H 1.08994 * 109.46871 * 60.00166 * 12 11 9 40 40 H 1.09000 * 109.46959 * 300.00074 * 12 11 9 41 41 H 1.09000 * 109.45980 * 55.02905 * 13 12 11 42 42 H 1.08999 * 109.68685 * 58.71306 * 14 13 12 43 43 H 1.08997 * 109.47481 * 298.51196 * 14 13 12 44 44 H 1.08999 * 109.58554 * 294.71486 * 15 14 13 45 45 H 1.09001 * 109.58356 * 174.43691 * 15 14 13 46 46 H 0.96997 * 119.99488 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.58736 * 173.39352 * 25 16 15 48 48 H 1.08995 * 109.58640 * 293.68128 * 25 16 15 49 49 H 1.08993 * 109.50017 * 61.43810 * 26 13 12 50 50 H 1.08996 * 109.50185 * 301.33457 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4818 -0.9525 0.9727 6 6 4.4360 -0.1143 1.4343 7 6 5.6766 -0.6580 1.0662 8 6 5.4132 -1.8151 0.3907 9 6 6.4107 -2.7232 -0.1848 10 8 7.5964 -2.4698 -0.0800 11 7 6.0143 -3.8382 -0.8298 12 6 7.0108 -4.7450 -1.4052 13 6 6.3012 -5.9230 -2.0760 14 6 5.5641 -6.7465 -1.0130 15 6 4.8290 -7.9046 -1.6951 16 7 5.7916 -8.6733 -2.4959 17 6 5.9177 -10.0261 -2.3259 18 1 5.6943 -10.4732 -1.3686 19 6 6.3327 -10.8230 -3.3841 20 7 6.2856 -10.3593 -4.6150 21 14 6.9579 -12.5533 -3.0612 22 1 6.9115 -12.8324 -1.6034 23 1 6.1024 -13.5311 -3.7803 24 1 8.3576 -12.6719 -3.5430 25 6 6.6160 -7.9628 -3.4830 26 6 7.3334 -6.8038 -2.7836 27 8 4.0743 -1.9731 0.3395 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3634 -1.0253 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5897 1.9163 -0.8525 33 1 1.7043 1.8723 0.9233 34 1 1.5090 -1.7407 1.1755 35 1 1.7975 -0.2249 2.0628 36 1 4.2744 0.8016 1.9832 37 1 6.6508 -0.2418 1.2765 38 1 5.0693 -4.0399 -0.9136 39 1 7.6636 -5.1159 -0.6151 40 1 7.6047 -4.2095 -2.1458 41 1 5.5837 -5.5470 -2.8053 42 1 4.8441 -6.1146 -0.4930 43 1 6.2839 -7.1437 -0.2973 44 1 4.0470 -7.5096 -2.3437 45 1 4.3843 -8.5512 -0.9387 46 1 6.5752 -10.9162 -5.3544 47 1 7.3523 -8.6471 -3.9046 48 1 5.9801 -7.5747 -4.2787 49 1 8.0366 -7.2003 -2.0512 50 1 7.8725 -6.2109 -3.5224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293420219.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:40 Heat of formation + Delta-G solvation = -20.109259 kcal Electronic energy + Delta-G solvation = -28719.378863 eV Core-core repulsion = 24747.886221 eV Total energy + Delta-G solvation = -3971.492642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.76113 -40.75641 -39.32417 -38.36230 -36.51448 -34.62347 -34.06532 -32.68512 -31.94124 -31.38355 -29.00286 -28.48077 -27.66301 -25.81188 -24.15545 -23.68341 -22.94411 -22.54112 -22.21015 -21.25523 -20.71872 -19.40435 -18.62515 -17.63753 -17.17042 -17.02038 -16.77452 -16.42584 -16.14770 -15.88434 -15.76091 -15.40587 -15.30610 -14.96926 -14.77622 -14.71181 -14.26477 -13.99580 -13.97396 -13.85645 -13.76316 -13.45224 -13.21536 -13.01789 -12.82725 -12.70832 -12.59576 -12.58779 -12.43760 -12.25059 -12.00319 -11.85338 -11.68109 -11.53945 -11.16648 -11.10116 -11.04195 -10.54018 -10.29103 -9.65800 -9.31163 -8.66887 -7.87096 -5.32082 -0.04974 1.26084 1.45521 1.47786 1.53334 1.58053 2.07422 2.13417 2.51445 3.06253 3.27351 3.48811 3.70457 3.78602 3.86740 3.90699 3.92116 4.06846 4.16503 4.25042 4.43302 4.48880 4.52259 4.53210 4.57468 4.66568 4.70579 4.71277 4.74422 4.77544 4.83391 4.88679 4.93093 5.00370 5.05379 5.07623 5.11297 5.23162 5.27524 5.29583 5.36254 5.41665 5.54967 5.66377 5.78191 5.80478 5.94141 6.03096 6.38963 6.40643 6.95019 7.16090 7.88061 8.39129 9.19304 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.002116 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.728412 B =13228.291746 C =14193.410400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.567 5.567 3 C 0.017 3.983 4 C 0.127 3.873 5 C 0.032 3.968 6 C -0.211 4.211 7 C -0.119 4.119 8 C -0.100 4.100 9 C 0.600 3.400 10 O -0.561 6.561 11 N -0.704 5.704 12 C 0.134 3.866 13 C -0.079 4.079 14 C -0.115 4.115 15 C 0.140 3.860 16 N -0.612 5.612 17 C -0.260 4.260 18 H 0.065 0.935 19 C -0.053 4.053 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.290 1.290 25 C 0.177 3.823 26 C -0.121 4.121 27 O -0.163 6.163 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.182 0.818 37 H 0.165 0.835 38 H 0.414 0.586 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.016 0.984 45 H 0.051 0.949 46 H 0.250 0.750 47 H 0.052 0.948 48 H -0.002 1.002 49 H 0.053 0.947 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.281 25.794 13.237 30.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.292 5.292 3 C -0.131 4.131 4 C 0.000 4.000 5 C -0.021 4.021 6 C -0.230 4.230 7 C -0.140 4.140 8 C -0.152 4.152 9 C 0.388 3.612 10 O -0.442 6.442 11 N -0.355 5.355 12 C 0.011 3.989 13 C -0.098 4.098 14 C -0.154 4.154 15 C 0.015 3.985 16 N -0.336 5.336 17 C -0.390 4.390 18 H 0.082 0.918 19 C -0.248 4.248 20 N -0.581 5.581 21 Si 0.794 3.206 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.217 1.217 25 C 0.051 3.949 26 C -0.161 4.161 27 O -0.059 6.059 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.200 0.800 37 H 0.182 0.818 38 H 0.251 0.749 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.016 0.984 49 H 0.072 0.928 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.420 25.358 12.582 29.834 hybrid contribution -0.088 -0.840 0.276 0.889 sum -9.508 24.518 12.858 29.272 Atomic orbital electron populations 1.22430 0.84825 1.03183 1.01732 1.61864 1.09660 1.15087 1.42563 1.22524 1.00995 0.87843 1.01709 1.20740 0.84319 1.01144 0.93800 1.23134 0.96543 0.87044 0.95409 1.21861 0.90292 1.03343 1.07548 1.22184 1.01034 0.93419 0.97357 1.21858 0.81043 1.01216 1.11091 1.16745 0.86220 0.80416 0.77866 1.90853 1.16848 1.75148 1.61353 1.45904 1.11699 1.22455 1.55404 1.21427 0.90543 0.89402 0.97523 1.21208 0.97600 0.93603 0.97354 1.21985 0.99433 0.96835 0.97126 1.21050 0.91010 0.92889 0.93547 1.44341 1.41703 1.03655 1.43869 1.19528 1.40901 0.83934 0.94672 0.91768 1.25794 1.02761 1.01478 0.94748 1.70187 1.51538 1.38076 0.98315 0.85234 0.77402 0.80114 0.77870 1.19184 1.21896 1.21702 1.20582 0.93006 0.91760 0.89563 1.21969 0.97575 0.96916 0.99595 1.84009 1.18125 1.43599 1.60159 0.93940 0.90588 0.90805 0.91811 0.90800 0.93705 0.87930 0.88550 0.80035 0.81754 0.74933 0.91655 0.91130 0.90668 0.90222 0.92819 0.96560 0.93014 0.94137 0.92937 0.98375 0.92831 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.57 127.69 1.22 1.43 16 2 N -0.57 -6.82 5.01 -953.47 -4.78 -11.59 16 3 C 0.02 0.17 9.27 127.69 1.18 1.35 16 4 C 0.13 1.35 5.49 85.56 0.47 1.82 16 5 C 0.03 0.52 6.21 24.97 0.16 0.68 16 6 C -0.21 -3.13 9.36 22.07 0.21 -2.93 16 7 C -0.12 -2.42 10.62 22.39 0.24 -2.18 16 8 C -0.10 -2.41 7.13 24.07 0.17 -2.24 16 9 C 0.60 16.91 7.79 86.44 0.67 17.58 16 10 O -0.56 -19.20 16.87 -4.35 -0.07 -19.28 16 11 N -0.70 -17.84 5.27 -467.10 -2.46 -20.30 16 12 C 0.13 3.68 5.07 86.38 0.44 4.12 16 13 C -0.08 -2.40 2.19 -10.66 -0.02 -2.42 16 14 C -0.11 -3.64 5.27 30.78 0.16 -3.48 16 15 C 0.14 5.69 6.50 86.36 0.56 6.25 16 16 N -0.61 -30.77 2.99 -699.08 -2.09 -32.87 16 17 C -0.26 -14.44 9.58 84.04 0.81 -13.63 16 18 H 0.06 3.49 7.88 -2.91 -0.02 3.47 16 19 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 20 N -0.93 -55.78 11.20 21.65 0.24 -55.54 16 21 Si 0.97 45.37 29.59 68.60 2.03 47.40 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 25 C 0.18 8.50 5.30 86.37 0.46 8.95 16 26 C -0.12 -4.43 5.36 30.67 0.16 -4.27 16 27 O -0.16 -3.55 10.40 -5.05 -0.05 -3.61 16 28 H 0.04 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.08 0.57 8.12 -2.39 -0.02 0.55 16 30 H 0.07 0.58 8.12 -2.38 -0.02 0.56 16 31 H 0.06 0.75 6.31 -2.38 -0.02 0.74 16 32 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 33 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.10 1.01 8.06 -2.38 -0.02 0.99 16 35 H 0.10 0.56 8.12 -2.39 -0.02 0.54 16 36 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 37 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.41 9.17 7.41 -92.71 -0.69 8.48 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.08 2.04 7.16 -2.39 -0.02 2.03 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 46 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 47 H 0.05 2.89 6.06 -2.39 -0.01 2.87 16 48 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 49 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -70.52 401.42 0.36 -70.16 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.24 Total: 17.15 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 7.30 Total: 8.48 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -9.09 Total: -120.30 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.13 Total: -22.88 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.52 0.36 -70.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293420219.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.051 kcal (2) G-P(sol) polarization free energy of solvation -70.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds