Wall clock time and date at job start Tue Mar 31 2020 18:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99831 * 2 1 4 4 C 1.52996 * 109.47146 * 269.99543 * 3 2 1 5 5 H 1.09004 * 112.95220 * 72.86384 * 4 3 2 6 6 C 1.53934 * 113.76075 * 204.50732 * 4 3 2 7 7 C 1.53933 * 86.34095 * 138.04141 * 6 4 3 8 8 N 1.47958 * 86.18233 * 336.27995 * 7 6 4 9 9 C 1.46894 * 111.00200 * 137.57956 * 8 7 6 10 10 C 1.50704 * 109.46930 * 70.64234 * 9 8 7 11 11 O 1.21288 * 120.00046 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00305 * 179.97438 * 10 9 8 13 13 C 1.37090 * 120.00150 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00310 * 0.02562 * 13 12 10 15 15 C 1.38952 * 120.00058 * 179.97438 * 13 12 10 16 16 N 1.31414 * 120.00283 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99858 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47263 * 89.99636 * 17 15 13 19 19 H 1.48503 * 109.46936 * 209.99831 * 17 15 13 20 20 H 1.48496 * 109.47163 * 329.99491 * 17 15 13 21 21 C 1.34769 * 119.99946 * 179.97438 * 2 1 3 22 22 O 1.21281 * 120.00192 * 184.64358 * 21 2 1 23 23 C 1.50705 * 120.00122 * 4.37062 * 21 2 1 24 24 H 1.09002 * 110.67146 * 328.51584 * 23 21 2 25 25 C 1.54888 * 110.75497 * 91.95642 * 23 21 2 26 26 C 1.54269 * 104.19290 * 156.25787 * 25 23 21 27 27 H 1.08998 * 117.41154 * 116.36447 * 26 25 23 28 28 C 1.55461 * 118.30394 * 272.80034 * 26 25 23 29 29 C 1.53005 * 59.84004 * 93.29602 * 28 26 25 30 30 H 1.08999 * 119.29828 * 111.71482 * 29 28 26 31 31 C 1.54263 * 118.20002 * 265.85400 * 29 28 26 32 32 H 1.08999 * 109.47138 * 274.74991 * 1 2 3 33 33 H 1.08999 * 109.46895 * 34.74651 * 1 2 3 34 34 H 1.08994 * 109.47426 * 154.74993 * 1 2 3 35 35 H 1.09001 * 109.47284 * 30.00329 * 3 2 1 36 36 H 1.09002 * 109.46976 * 149.99845 * 3 2 1 37 37 H 1.09008 * 113.73275 * 252.39817 * 6 4 3 38 38 H 1.08998 * 113.73689 * 23.67912 * 6 4 3 39 39 H 1.09002 * 113.75783 * 90.59908 * 7 6 4 40 40 H 1.09001 * 113.75913 * 221.96312 * 7 6 4 41 41 H 1.09000 * 109.47289 * 190.63693 * 9 8 7 42 42 H 1.09000 * 109.47414 * 310.64551 * 9 8 7 43 43 H 0.97000 * 119.99633 * 0.02562 * 12 10 9 44 44 H 0.96997 * 119.99910 * 180.02562 * 16 15 13 45 45 H 1.08996 * 110.48582 * 274.93018 * 25 23 21 46 46 H 1.09000 * 110.48844 * 37.58278 * 25 23 21 47 47 H 1.08995 * 118.06329 * 346.16345 * 28 26 25 48 48 H 1.09001 * 117.18807 * 200.82109 * 28 26 25 49 49 H 1.09009 * 110.48548 * 330.32114 * 31 29 28 50 50 H 1.09000 * 110.48565 * 207.67933 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5533 2.0712 -1.9419 6 6 3.6663 2.6439 -1.5999 7 6 4.0090 1.8245 -2.8571 8 7 3.2270 0.7319 -2.2375 9 6 2.3731 0.0669 -3.2306 10 6 3.2317 -0.7325 -4.1766 11 8 4.4365 -0.7464 -4.0374 12 7 2.6609 -1.4320 -5.1773 13 6 3.4420 -2.1595 -6.0375 14 1 4.5147 -2.1726 -5.9131 15 6 2.8534 -2.8811 -7.0688 16 7 3.6021 -3.5782 -7.8938 17 14 0.9979 -2.8592 -7.2836 18 1 0.6168 -1.7402 -8.1824 19 1 0.5532 -4.1452 -7.8783 20 1 0.3486 -2.6748 -5.9609 21 6 2.1388 -1.1671 0.0005 22 8 3.3487 -1.1689 0.0856 23 6 1.3886 -2.4704 -0.0984 24 1 0.4098 -2.3878 0.3742 25 6 1.2537 -2.9154 -1.5758 26 6 1.0562 -4.4432 -1.4942 27 1 0.1089 -4.8465 -1.8519 28 6 2.3193 -5.3488 -1.4584 29 6 1.6623 -4.8938 -0.1536 30 1 1.1616 -5.6291 0.4762 31 6 2.2070 -3.6242 0.5327 32 1 -0.3633 0.0851 1.0241 33 1 -0.3633 0.8444 -0.5857 34 1 -0.3634 -0.9294 -0.4383 35 1 1.6084 2.0284 0.5139 36 1 3.1499 1.1384 0.5139 37 1 3.3989 3.6795 -1.8105 38 1 4.4005 2.5478 -0.7999 39 1 3.5655 2.2177 -3.7719 40 1 5.0709 1.6010 -2.9597 41 1 1.6756 -0.5989 -2.7224 42 1 1.8160 0.8173 -3.7915 43 1 1.6974 -1.4206 -5.2888 44 1 3.1912 -4.0815 -8.6139 45 1 0.3874 -2.4430 -2.0388 46 1 2.1613 -2.6771 -2.1304 47 1 3.2782 -4.9020 -1.7207 48 1 2.1925 -6.3920 -1.7478 49 1 3.2687 -3.5004 0.3186 50 1 2.0365 -3.6690 1.6084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316600344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:15 Heat of formation + Delta-G solvation = 8.021962 kcal Electronic energy + Delta-G solvation = -31448.484261 eV Core-core repulsion = 27478.211480 eV Total energy + Delta-G solvation = -3970.272781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63559 -39.69460 -38.28408 -37.68125 -35.34226 -33.89435 -32.03230 -31.63553 -30.61084 -28.92643 -28.21269 -26.58199 -25.77716 -24.32781 -23.42313 -22.52984 -20.71831 -19.67142 -19.43006 -19.31530 -18.73904 -18.27344 -17.12227 -16.31464 -16.09772 -15.96899 -15.74225 -15.38788 -14.79705 -14.52757 -14.19621 -13.79041 -13.53955 -13.45340 -13.17458 -13.09983 -12.94704 -12.79041 -12.66875 -12.40836 -12.36033 -12.12421 -11.67353 -11.63577 -11.40643 -11.29408 -11.25168 -11.12868 -11.04131 -10.95247 -10.74221 -10.57813 -10.47606 -9.93166 -9.89938 -9.62394 -9.51414 -9.34329 -8.81479 -8.39622 -8.19059 -8.11485 -6.26328 -3.76909 2.82827 3.00948 3.03331 3.07124 3.15594 3.74283 3.80197 4.02159 4.13316 4.40398 4.56116 4.71853 4.78482 4.81005 4.86683 4.87323 5.01502 5.08000 5.15058 5.21545 5.24009 5.28650 5.31843 5.43398 5.44817 5.48588 5.51450 5.55123 5.58115 5.61234 5.75688 5.79931 5.81156 5.91064 5.97085 5.97894 6.04012 6.12437 6.14697 6.28467 6.35581 6.37425 6.46696 6.56638 6.74978 7.27408 7.48036 7.63557 8.19750 8.44450 8.65705 9.01003 9.47717 9.90125 10.87159 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008961 B = 0.005506 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.043882 B = 5084.391264 C = 7051.476420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.621 5.621 3 C 0.139 3.861 4 C 0.004 3.996 5 H 0.073 0.927 6 C -0.137 4.137 7 C 0.017 3.983 8 N -0.427 5.427 9 C 0.009 3.991 10 C 0.456 3.544 11 O -0.554 6.554 12 N -0.594 5.594 13 C -0.299 4.299 14 H 0.119 0.881 15 C 0.042 3.958 16 N -0.883 5.883 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.270 1.270 21 C 0.523 3.477 22 O -0.502 6.502 23 C -0.113 4.113 24 H 0.092 0.908 25 C -0.083 4.083 26 C -0.163 4.163 27 H 0.110 0.890 28 C -0.148 4.148 29 C -0.166 4.166 30 H 0.106 0.894 31 C -0.080 4.080 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.367 0.633 44 H 0.272 0.728 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.661 7.300 17.319 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.356 5.356 3 C 0.016 3.984 4 C -0.107 4.107 5 H 0.091 0.909 6 C -0.175 4.175 7 C -0.112 4.112 8 N -0.149 5.149 9 C -0.123 4.123 10 C 0.241 3.759 11 O -0.434 6.434 12 N -0.234 5.234 13 C -0.428 4.428 14 H 0.136 0.864 15 C -0.161 4.161 16 N -0.524 5.524 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.202 1.202 20 H -0.195 1.195 21 C 0.310 3.690 22 O -0.375 6.375 23 C -0.135 4.135 24 H 0.110 0.890 25 C -0.121 4.121 26 C -0.181 4.181 27 H 0.128 0.872 28 C -0.185 4.185 29 C -0.184 4.184 30 H 0.125 0.875 31 C -0.118 4.118 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.200 0.800 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.104 0.896 47 H 0.118 0.882 48 H 0.116 0.884 49 H 0.106 0.894 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.818 6.580 17.603 21.683 hybrid contribution -2.440 0.412 -1.051 2.688 sum -13.258 6.992 16.551 22.329 Atomic orbital electron populations 1.21804 0.80288 1.03172 1.01451 1.47722 1.06266 1.06109 1.75488 1.21332 0.97929 0.84324 0.94857 1.23983 0.96383 0.93783 0.96578 0.90928 1.23372 0.97216 0.97447 0.99511 1.23701 1.01846 0.90589 0.95047 1.68505 1.13954 1.17334 1.15118 1.22528 0.96260 0.98802 0.94758 1.19576 0.88919 0.84238 0.83165 1.90577 1.14378 1.65395 1.73061 1.42204 1.07914 1.45135 1.28121 1.19406 0.94148 1.23212 1.06050 0.86365 1.24997 0.98053 0.96798 0.96218 1.69620 1.35191 1.30547 1.17005 0.86723 0.85713 0.78708 0.78579 1.19821 1.20194 1.19513 1.20354 0.88012 0.84635 0.75983 1.90737 1.13677 1.86611 1.46464 1.22512 0.99608 0.92925 0.98441 0.89002 1.21905 1.03074 0.93412 0.93696 1.23495 0.98263 0.94066 1.02315 0.87156 1.23467 0.96975 0.99266 0.98795 1.23224 1.05054 0.99809 0.90328 0.87547 1.21852 1.00885 0.90473 0.98549 0.92823 0.91537 0.90779 0.90674 0.89155 0.91336 0.89040 0.91978 0.88735 0.89759 0.93520 0.80019 0.91735 0.91258 0.89643 0.88227 0.88430 0.89441 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.11 59.85 0.60 1.19 16 2 N -0.62 -7.15 2.85 -181.58 -0.52 -7.66 16 3 C 0.14 1.54 5.62 -4.04 -0.02 1.52 16 4 C 0.00 0.05 3.57 -66.66 -0.24 -0.19 16 5 H 0.07 0.79 7.80 -51.93 -0.40 0.39 16 6 C -0.14 -1.61 7.84 -25.80 -0.20 -1.81 16 7 C 0.02 0.27 6.75 -2.77 -0.02 0.25 16 8 N -0.43 -7.29 4.95 -232.14 -1.15 -8.44 16 9 C 0.01 0.16 5.31 -4.98 -0.03 0.13 16 10 C 0.46 10.80 7.59 -10.98 -0.08 10.71 16 11 O -0.55 -15.54 15.12 5.55 0.08 -15.46 16 12 N -0.59 -14.48 5.09 -10.96 -0.06 -14.54 16 13 C -0.30 -8.61 10.16 -14.94 -0.15 -8.76 16 14 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 15 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 16 N -0.88 -26.14 13.96 55.50 0.77 -25.37 16 17 Si 0.88 19.61 27.74 -169.99 -4.71 14.90 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 21 C 0.52 7.68 6.02 -10.99 -0.07 7.61 16 22 O -0.50 -9.65 15.10 5.56 0.08 -9.57 16 23 C -0.11 -1.42 2.32 -89.78 -0.21 -1.63 16 24 H 0.09 0.90 6.50 -51.93 -0.34 0.56 16 25 C -0.08 -1.18 4.98 -25.07 -0.12 -1.31 16 26 C -0.16 -2.17 7.04 -88.19 -0.62 -2.79 16 27 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 28 C -0.15 -2.09 10.21 -25.42 -0.26 -2.35 16 29 C -0.17 -2.02 6.85 -89.50 -0.61 -2.64 16 30 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 31 C -0.08 -1.04 5.93 -25.07 -0.15 -1.19 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 34 H 0.07 0.54 5.81 -51.93 -0.30 0.24 16 35 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 36 H 0.09 1.20 7.13 -51.93 -0.37 0.83 16 37 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.09 1.08 7.94 -51.93 -0.41 0.67 16 39 H 0.06 0.97 7.78 -51.93 -0.40 0.56 16 40 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 41 H 0.08 1.41 6.21 -51.93 -0.32 1.09 16 42 H 0.05 0.74 7.69 -51.93 -0.40 0.34 16 43 H 0.37 7.94 5.76 -40.82 -0.24 7.70 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 46 H 0.09 1.59 7.63 -51.93 -0.40 1.20 16 47 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 48 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 49 H 0.09 1.40 7.24 -51.92 -0.38 1.02 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 393.64 15.07 5.93 5.93 Total: -1.00 -35.72 393.64 -9.98 -45.70 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -8.14 Total: 14.69 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.28 Total: -0.19 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.95 Total: -56.00 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: 0.17 Total: -25.03 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.72 -9.98 -45.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316600344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.723 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds