Wall clock time and date at job start Tue Mar 31 2020 18:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99831 * 2 1 4 4 C 1.52996 * 109.47146 * 269.99543 * 3 2 1 5 5 H 1.09004 * 112.95220 * 72.86384 * 4 3 2 6 6 C 1.53934 * 113.76075 * 204.50732 * 4 3 2 7 7 C 1.53933 * 86.34095 * 138.04141 * 6 4 3 8 8 N 1.47958 * 86.18233 * 336.27995 * 7 6 4 9 9 C 1.46894 * 111.00200 * 137.57956 * 8 7 6 10 10 C 1.50704 * 109.46930 * 70.64234 * 9 8 7 11 11 O 1.21288 * 120.00046 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00305 * 179.97438 * 10 9 8 13 13 C 1.37090 * 120.00150 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00310 * 0.02562 * 13 12 10 15 15 C 1.38952 * 120.00058 * 179.97438 * 13 12 10 16 16 N 1.31414 * 120.00283 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99858 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47263 * 89.99636 * 17 15 13 19 19 H 1.48503 * 109.46936 * 209.99831 * 17 15 13 20 20 H 1.48496 * 109.47163 * 329.99491 * 17 15 13 21 21 C 1.34769 * 119.99946 * 179.97438 * 2 1 3 22 22 O 1.21281 * 120.00192 * 184.64358 * 21 2 1 23 23 C 1.50705 * 120.00122 * 4.37062 * 21 2 1 24 24 H 1.09002 * 110.67146 * 328.51584 * 23 21 2 25 25 C 1.54888 * 110.75497 * 91.95642 * 23 21 2 26 26 C 1.54269 * 104.19290 * 156.25787 * 25 23 21 27 27 H 1.08998 * 117.41154 * 116.36447 * 26 25 23 28 28 C 1.55461 * 118.30394 * 272.80034 * 26 25 23 29 29 C 1.53005 * 59.84004 * 93.29602 * 28 26 25 30 30 H 1.08999 * 119.29828 * 111.71482 * 29 28 26 31 31 C 1.54263 * 118.20002 * 265.85400 * 29 28 26 32 32 H 1.08999 * 109.47138 * 274.74991 * 1 2 3 33 33 H 1.08999 * 109.46895 * 34.74651 * 1 2 3 34 34 H 1.08994 * 109.47426 * 154.74993 * 1 2 3 35 35 H 1.09001 * 109.47284 * 30.00329 * 3 2 1 36 36 H 1.09002 * 109.46976 * 149.99845 * 3 2 1 37 37 H 1.09008 * 113.73275 * 252.39817 * 6 4 3 38 38 H 1.08998 * 113.73689 * 23.67912 * 6 4 3 39 39 H 1.09002 * 113.75783 * 90.59908 * 7 6 4 40 40 H 1.09001 * 113.75913 * 221.96312 * 7 6 4 41 41 H 1.09000 * 109.47289 * 190.63693 * 9 8 7 42 42 H 1.09000 * 109.47414 * 310.64551 * 9 8 7 43 43 H 0.97000 * 119.99633 * 0.02562 * 12 10 9 44 44 H 0.96997 * 119.99910 * 180.02562 * 16 15 13 45 45 H 1.08996 * 110.48582 * 274.93018 * 25 23 21 46 46 H 1.09000 * 110.48844 * 37.58278 * 25 23 21 47 47 H 1.08995 * 118.06329 * 346.16345 * 28 26 25 48 48 H 1.09001 * 117.18807 * 200.82109 * 28 26 25 49 49 H 1.09009 * 110.48548 * 330.32114 * 31 29 28 50 50 H 1.09000 * 110.48565 * 207.67933 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5533 2.0712 -1.9419 6 6 3.6663 2.6439 -1.5999 7 6 4.0090 1.8245 -2.8571 8 7 3.2270 0.7319 -2.2375 9 6 2.3731 0.0669 -3.2306 10 6 3.2317 -0.7325 -4.1766 11 8 4.4365 -0.7464 -4.0374 12 7 2.6609 -1.4320 -5.1773 13 6 3.4420 -2.1595 -6.0375 14 1 4.5147 -2.1726 -5.9131 15 6 2.8534 -2.8811 -7.0688 16 7 3.6021 -3.5782 -7.8938 17 14 0.9979 -2.8592 -7.2836 18 1 0.6168 -1.7402 -8.1824 19 1 0.5532 -4.1452 -7.8783 20 1 0.3486 -2.6748 -5.9609 21 6 2.1388 -1.1671 0.0005 22 8 3.3487 -1.1689 0.0856 23 6 1.3886 -2.4704 -0.0984 24 1 0.4098 -2.3878 0.3742 25 6 1.2537 -2.9154 -1.5758 26 6 1.0562 -4.4432 -1.4942 27 1 0.1089 -4.8465 -1.8519 28 6 2.3193 -5.3488 -1.4584 29 6 1.6623 -4.8938 -0.1536 30 1 1.1616 -5.6291 0.4762 31 6 2.2070 -3.6242 0.5327 32 1 -0.3633 0.0851 1.0241 33 1 -0.3633 0.8444 -0.5857 34 1 -0.3634 -0.9294 -0.4383 35 1 1.6084 2.0284 0.5139 36 1 3.1499 1.1384 0.5139 37 1 3.3989 3.6795 -1.8105 38 1 4.4005 2.5478 -0.7999 39 1 3.5655 2.2177 -3.7719 40 1 5.0709 1.6010 -2.9597 41 1 1.6756 -0.5989 -2.7224 42 1 1.8160 0.8173 -3.7915 43 1 1.6974 -1.4206 -5.2888 44 1 3.1912 -4.0815 -8.6139 45 1 0.3874 -2.4430 -2.0388 46 1 2.1613 -2.6771 -2.1304 47 1 3.2782 -4.9020 -1.7207 48 1 2.1925 -6.3920 -1.7478 49 1 3.2687 -3.5004 0.3186 50 1 2.0365 -3.6690 1.6084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316600344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:14 Heat of formation + Delta-G solvation = -19.254555 kcal Electronic energy + Delta-G solvation = -31449.667059 eV Core-core repulsion = 27478.211480 eV Total energy + Delta-G solvation = -3971.455580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.74523 -40.92134 -39.77822 -39.09151 -36.36512 -35.99474 -33.80623 -33.07755 -31.96795 -29.89001 -29.28131 -27.60475 -27.32573 -25.41981 -25.11289 -23.56483 -21.80233 -21.32834 -20.67948 -20.49113 -20.29102 -19.70138 -18.12354 -17.80675 -17.25030 -17.16190 -16.92469 -16.72372 -16.56296 -15.94084 -15.45030 -15.26164 -14.97980 -14.68582 -14.44737 -14.35346 -14.16735 -14.05574 -13.98213 -13.83568 -13.58359 -13.05334 -13.03648 -12.90892 -12.65429 -12.51054 -12.46065 -12.30489 -12.26322 -12.08009 -12.01017 -11.99340 -11.84430 -11.62077 -11.51575 -10.93602 -10.70762 -10.47503 -10.45364 -10.27064 -9.72602 -9.30413 -8.42998 -6.03989 1.25258 1.31908 1.41099 1.75605 1.92408 2.12271 2.20657 2.66607 2.70087 3.12087 3.15387 3.40900 3.60728 3.68876 3.78310 3.82429 3.99515 4.07484 4.13930 4.20730 4.21709 4.25577 4.32204 4.36704 4.40863 4.42797 4.49123 4.51092 4.55621 4.60223 4.69474 4.80318 4.84503 4.87765 4.94563 4.96329 5.00887 5.03120 5.10025 5.14567 5.27039 5.33173 5.40200 5.47273 5.52062 5.78145 5.89940 6.12741 6.55501 6.57931 6.86074 7.36030 7.43097 7.94804 8.75188 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008961 B = 0.005506 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.043882 B = 5084.391264 C = 7051.476420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.615 5.615 3 C 0.137 3.863 4 C 0.015 3.985 5 H 0.105 0.895 6 C -0.115 4.115 7 C 0.003 3.997 8 N -0.466 5.466 9 C 0.026 3.974 10 C 0.452 3.548 11 O -0.610 6.610 12 N -0.589 5.589 13 C -0.326 4.326 14 H 0.048 0.952 15 C -0.014 4.014 16 N -0.935 5.935 17 Si 0.963 3.037 18 H -0.255 1.255 19 H -0.272 1.272 20 H -0.230 1.230 21 C 0.514 3.486 22 O -0.565 6.565 23 C -0.103 4.103 24 H 0.136 0.864 25 C -0.084 4.084 26 C -0.162 4.162 27 H 0.139 0.861 28 C -0.181 4.181 29 C -0.141 4.141 30 H 0.140 0.860 31 C -0.086 4.086 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.387 0.613 44 H 0.279 0.721 45 H 0.096 0.904 46 H 0.027 0.973 47 H 0.054 0.946 48 H 0.113 0.887 49 H 0.041 0.959 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.447 9.014 19.185 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.348 5.348 3 C 0.014 3.986 4 C -0.095 4.095 5 H 0.123 0.877 6 C -0.153 4.153 7 C -0.126 4.126 8 N -0.190 5.190 9 C -0.106 4.106 10 C 0.239 3.761 11 O -0.494 6.494 12 N -0.231 5.231 13 C -0.455 4.455 14 H 0.066 0.934 15 C -0.212 4.212 16 N -0.576 5.576 17 Si 0.782 3.218 18 H -0.179 1.179 19 H -0.197 1.197 20 H -0.153 1.153 21 C 0.302 3.698 22 O -0.443 6.443 23 C -0.124 4.124 24 H 0.154 0.846 25 C -0.122 4.122 26 C -0.180 4.180 27 H 0.157 0.843 28 C -0.218 4.218 29 C -0.159 4.159 30 H 0.158 0.842 31 C -0.124 4.124 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.140 0.860 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.222 0.778 44 H 0.089 0.911 45 H 0.115 0.885 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.132 0.868 49 H 0.060 0.940 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.658 8.335 19.492 27.590 hybrid contribution -0.120 -0.107 -1.624 1.632 sum -17.778 8.228 17.867 26.514 Atomic orbital electron populations 1.22157 0.77133 1.04646 1.03621 1.47821 1.08177 1.05115 1.73670 1.21433 0.97684 0.85316 0.94196 1.24131 0.97102 0.91776 0.96513 0.87692 1.23239 0.96723 0.98847 0.96464 1.23691 0.99457 0.91950 0.97476 1.68521 1.15705 1.19218 1.15529 1.22399 0.95250 0.98969 0.93945 1.20832 0.88987 0.83273 0.82964 1.90554 1.17521 1.66977 1.74323 1.41978 1.08398 1.44896 1.27789 1.18928 0.91913 1.26057 1.08624 0.93412 1.26116 1.05521 0.95003 0.94577 1.69814 1.38699 1.31288 1.17768 0.85406 0.76364 0.79361 0.80690 1.17940 1.19671 1.15274 1.20793 0.87440 0.86264 0.75257 1.90725 1.16493 1.87569 1.49490 1.22533 1.01036 0.91446 0.97429 0.84580 1.21869 1.01304 0.94634 0.94388 1.23658 0.98223 0.93202 1.02905 0.84347 1.23451 0.96012 1.00292 1.02074 1.23284 1.03348 0.99533 0.89747 0.84202 1.21871 0.98536 0.91712 1.00254 0.90442 0.89215 0.90075 0.86000 0.92270 0.87598 0.89760 0.91455 0.93175 0.88088 0.90121 0.77760 0.91137 0.88533 0.95374 0.92703 0.86841 0.94032 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 10.11 127.77 1.29 1.90 16 2 N -0.61 -12.10 2.85 -846.77 -2.41 -14.51 16 3 C 0.14 2.61 5.62 86.38 0.49 3.10 16 4 C 0.01 0.31 3.57 45.02 0.16 0.47 16 5 H 0.11 1.64 7.80 -2.38 -0.02 1.62 16 6 C -0.11 -2.49 7.84 31.24 0.24 -2.24 16 7 C 0.00 0.11 6.75 86.41 0.58 0.69 16 8 N -0.47 -15.96 4.95 -888.36 -4.40 -20.35 16 9 C 0.03 0.91 5.31 85.56 0.45 1.36 16 10 C 0.45 22.44 7.59 87.66 0.67 23.10 16 11 O -0.61 -37.50 15.12 -3.05 -0.05 -37.55 16 12 N -0.59 -29.50 5.09 -306.98 -1.56 -31.06 16 13 C -0.33 -20.03 10.16 84.04 0.85 -19.18 16 14 H 0.05 3.53 7.39 -2.91 -0.02 3.51 16 15 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 16 N -0.93 -57.98 13.96 21.66 0.30 -57.68 16 17 Si 0.96 39.46 27.74 68.60 1.90 41.37 16 18 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.23 -7.86 6.52 99.48 0.65 -7.22 16 21 C 0.51 14.70 6.02 87.66 0.53 15.23 16 22 O -0.57 -23.04 15.10 -3.03 -0.05 -23.08 16 23 C -0.10 -2.39 2.32 -10.25 -0.02 -2.41 16 24 H 0.14 1.95 6.50 -2.39 -0.02 1.94 16 25 C -0.08 -2.28 4.98 31.67 0.16 -2.12 16 26 C -0.16 -4.02 7.04 -9.22 -0.06 -4.08 16 27 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 28 C -0.18 -5.34 10.21 31.44 0.32 -5.02 16 29 C -0.14 -3.23 6.85 -10.07 -0.07 -3.30 16 30 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 31 C -0.09 -2.22 5.93 31.67 0.19 -2.03 16 32 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.09 0.49 8.11 -2.39 -0.02 0.47 16 34 H 0.08 0.67 5.81 -2.39 -0.01 0.66 16 35 H 0.12 1.23 8.07 -2.39 -0.02 1.22 16 36 H 0.06 1.54 7.13 -2.39 -0.02 1.52 16 37 H 0.11 1.55 8.14 -2.38 -0.02 1.54 16 38 H 0.08 1.96 7.94 -2.39 -0.02 1.94 16 39 H 0.07 2.08 7.78 -2.39 -0.02 2.07 16 40 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 41 H 0.10 3.16 6.21 -2.39 -0.01 3.15 16 42 H 0.08 2.26 7.69 -2.39 -0.02 2.25 16 43 H 0.39 16.05 5.76 -92.71 -0.53 15.52 16 44 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 45 H 0.10 2.03 7.86 -2.39 -0.02 2.01 16 46 H 0.03 1.09 7.63 -2.39 -0.02 1.07 16 47 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 49 H 0.04 1.46 7.24 -2.38 -0.02 1.44 16 50 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -93.58 393.64 0.34 -93.24 By element: Atomic # 1 Polarization: 44.12 SS G_CDS: 0.35 Total: 44.48 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 6.24 Total: 5.15 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -8.07 Total: -123.60 kcal Atomic # 8 Polarization: -60.54 SS G_CDS: -0.09 Total: -60.63 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.90 Total: 41.37 kcal Total: -93.58 0.34 -93.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316600344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.985 kcal (2) G-P(sol) polarization free energy of solvation -93.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds