Wall clock time and date at job start Tue Mar 31 2020 18:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34782 * 120.00203 * 2 1 4 4 O 1.21279 * 119.99894 * 5.02078 * 3 2 1 5 5 C 1.50701 * 120.00094 * 185.02606 * 3 2 1 6 6 C 1.50698 * 112.85038 * 294.04489 * 5 3 2 7 7 O 1.21276 * 120.00118 * 112.90993 * 6 5 3 8 8 N 1.34779 * 119.99796 * 292.91691 * 6 5 3 9 9 C 1.46498 * 120.00020 * 175.01531 * 8 6 5 10 10 C 1.53149 * 109.43242 * 119.85609 * 9 8 6 11 11 C 1.53699 * 108.87736 * 66.13428 * 10 9 8 12 12 H 1.09005 * 112.09837 * 187.61139 * 11 10 9 13 13 C 1.54601 * 107.83388 * 312.22617 * 11 10 9 14 14 C 1.54819 * 104.65496 * 88.55056 * 13 11 10 15 15 C 1.54609 * 104.65238 * 0.02562 * 14 13 11 16 16 H 1.08996 * 112.69540 * 147.18959 * 15 14 13 17 17 C 1.53147 * 109.40137 * 240.05831 * 9 8 6 18 18 N 1.48291 * 104.25990 * 25.24961 * 15 14 13 19 19 C 1.36937 * 128.21341 * 138.40439 * 18 15 14 20 20 H 1.08002 * 119.99334 * 341.90719 * 19 18 15 21 21 C 1.38806 * 120.00331 * 161.90228 * 19 18 15 22 22 N 1.31619 * 119.99937 * 352.40795 * 21 19 18 23 23 Si 1.86800 * 119.99873 * 172.40842 * 21 19 18 24 24 H 1.48505 * 109.47300 * 269.99707 * 23 21 19 25 25 H 1.48496 * 109.47265 * 29.99918 * 23 21 19 26 26 H 1.48504 * 109.47198 * 150.00119 * 23 21 19 27 27 C 1.53779 * 113.69091 * 65.31216 * 5 3 2 28 28 C 1.53784 * 87.08231 * 89.12419 * 27 5 3 29 29 C 1.53782 * 113.61221 * 162.84706 * 5 3 2 30 30 H 1.08993 * 109.47095 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46974 * 300.00673 * 1 2 3 32 32 H 1.09004 * 109.46837 * 60.00207 * 1 2 3 33 33 H 0.97004 * 120.00370 * 179.97438 * 2 1 3 34 34 H 0.97007 * 119.99864 * 355.01451 * 8 6 5 35 35 H 1.08998 * 109.43501 * 359.94632 * 9 8 6 36 36 H 1.08997 * 109.57422 * 306.31370 * 10 9 8 37 37 H 1.09005 * 109.56903 * 185.95198 * 10 9 8 38 38 H 1.09003 * 110.38359 * 207.49003 * 13 11 10 39 39 H 1.09004 * 110.38386 * 329.84677 * 13 11 10 40 40 H 1.08996 * 110.33539 * 241.26476 * 14 13 11 41 41 H 1.09004 * 110.62215 * 118.88344 * 14 13 11 42 42 H 1.09001 * 109.56719 * 53.66243 * 17 9 8 43 43 H 1.08993 * 109.57222 * 173.91175 * 17 9 8 44 44 H 0.97007 * 119.99617 * 179.97438 * 22 21 19 45 45 H 1.08994 * 113.61425 * 203.67819 * 27 5 3 46 46 H 1.09009 * 113.61396 * 334.58059 * 27 5 3 47 47 H 1.08995 * 113.61577 * 270.88219 * 28 27 5 48 48 H 1.08999 * 113.61157 * 139.98100 * 28 27 5 49 49 H 1.09000 * 113.61718 * 25.34514 * 29 5 3 50 50 H 1.09001 * 113.61367 * 156.16741 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5361 2.2155 0.0919 5 6 3.6416 1.1697 -0.1143 6 6 4.3204 0.5498 1.0798 7 8 4.9269 -0.4934 0.9588 8 7 4.2533 1.1547 2.2824 9 6 4.8185 0.4995 3.4645 10 6 5.9145 1.3859 4.0632 11 6 5.2730 2.6747 4.6016 12 1 6.0196 3.4023 4.9199 13 6 4.3301 3.2269 3.5079 14 6 2.9706 2.5373 3.7781 15 6 3.2264 1.6371 5.0088 16 1 2.3499 1.5418 5.6496 17 6 3.7125 0.2761 4.5000 18 7 4.3627 2.2862 5.7063 19 6 4.5338 2.4763 7.0516 20 1 3.6868 2.4096 7.7183 21 6 5.7958 2.7545 7.5582 22 7 6.8496 2.6887 6.7725 23 14 5.9984 3.2222 9.3554 24 1 5.8882 4.6962 9.4987 25 1 4.9372 2.5659 10.1604 26 1 7.3311 2.7766 9.8357 27 6 4.1596 0.6392 -1.4615 28 6 4.0649 2.0846 -1.9779 29 6 4.2265 2.5340 -0.5161 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.9501 -0.8400 0.0004 34 1 3.8307 2.0240 2.3651 35 1 5.2456 -0.4612 3.1772 36 1 6.6438 1.6355 3.2925 37 1 6.4083 0.8560 4.8777 38 1 4.2349 4.3089 3.5997 39 1 4.6999 2.9603 2.5178 40 1 2.6752 1.9333 2.9203 41 1 2.2026 3.2776 4.0027 42 1 2.8831 -0.2597 4.0384 43 1 4.1049 -0.3063 5.3335 44 1 7.7315 2.8835 7.1265 45 1 5.1795 0.2572 -1.4173 46 1 3.4707 -0.0467 -1.9548 47 1 3.0937 2.3326 -2.4060 48 1 4.8976 2.3749 -2.6185 49 1 3.5917 3.3779 -0.2460 50 1 5.2643 2.6707 -0.2121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317098895.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:38 Heat of formation + Delta-G solvation = 32.119396 kcal Electronic energy + Delta-G solvation = -32067.655811 eV Core-core repulsion = 28098.427973 eV Total energy + Delta-G solvation = -3969.227838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.90993 -41.60289 -39.63095 -38.03743 -35.89802 -35.65461 -33.95918 -32.83433 -32.00160 -30.90201 -29.31925 -27.25848 -26.48879 -26.22545 -24.91775 -23.51423 -22.61268 -21.95294 -21.25528 -21.08966 -20.34049 -19.44010 -18.57005 -17.39720 -17.07550 -17.05235 -16.80471 -16.09016 -15.98273 -15.80124 -15.46789 -15.25952 -14.82439 -14.62530 -14.57268 -14.41436 -13.86860 -13.83625 -13.77197 -13.46747 -13.37954 -13.26538 -13.17827 -12.96313 -12.81511 -12.68052 -12.44761 -12.35503 -12.06368 -12.00320 -11.94331 -11.81807 -11.49084 -11.40851 -11.18314 -11.09437 -11.04315 -10.63489 -10.55183 -10.19191 -9.69034 -8.74493 -7.83767 -5.20298 1.25926 1.48375 1.49132 1.53014 1.57071 2.13890 2.26561 2.50757 3.32900 3.34278 3.45113 3.50317 3.63409 3.74190 3.78187 3.86494 3.93507 4.09186 4.21825 4.24401 4.34943 4.39607 4.44737 4.48496 4.62432 4.63025 4.67096 4.75553 4.79607 4.92116 4.93856 4.95067 4.96509 5.00323 5.02031 5.04523 5.06015 5.20602 5.25831 5.34104 5.36029 5.38515 5.53125 5.55766 5.75217 5.82191 6.26690 6.34395 6.51876 7.04284 7.09306 7.16245 7.74936 8.56279 9.27419 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020511 B = 0.003636 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.812290 B = 7698.262462 C = 8074.719899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.721 5.721 3 C 0.544 3.456 4 O -0.553 6.553 5 C -0.141 4.141 6 C 0.518 3.482 7 O -0.569 6.569 8 N -0.726 5.726 9 C 0.153 3.847 10 C -0.113 4.113 11 C 0.179 3.821 12 H 0.071 0.929 13 C -0.162 4.162 14 C -0.146 4.146 15 C 0.143 3.857 16 H 0.071 0.929 17 C -0.129 4.129 18 N -0.601 5.601 19 C -0.236 4.236 20 H 0.074 0.926 21 C -0.052 4.052 22 N -0.933 5.933 23 Si 0.969 3.031 24 H -0.290 1.290 25 H -0.273 1.273 26 H -0.298 1.298 27 C -0.097 4.097 28 C -0.127 4.127 29 C -0.121 4.121 30 H 0.108 0.892 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.413 0.587 34 H 0.433 0.567 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.246 0.754 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.084 0.916 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 -4.559 -18.434 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.372 5.372 3 C 0.328 3.672 4 O -0.431 6.431 5 C -0.148 4.148 6 C 0.304 3.696 7 O -0.449 6.449 8 N -0.398 5.398 9 C 0.048 3.952 10 C -0.153 4.153 11 C 0.072 3.928 12 H 0.089 0.911 13 C -0.201 4.201 14 C -0.185 4.185 15 C 0.036 3.964 16 H 0.089 0.911 17 C -0.169 4.169 18 N -0.323 5.323 19 C -0.365 4.365 20 H 0.092 0.908 21 C -0.246 4.246 22 N -0.580 5.580 23 Si 0.799 3.201 24 H -0.217 1.217 25 H -0.198 1.198 26 H -0.224 1.224 27 C -0.135 4.135 28 C -0.165 4.165 29 C -0.159 4.159 30 H 0.127 0.873 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.248 0.752 34 H 0.294 0.706 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.116 0.884 46 H 0.108 0.892 47 H 0.105 0.895 48 H 0.115 0.885 49 H 0.103 0.897 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.029 -4.440 -18.219 21.266 hybrid contribution 0.693 0.088 1.566 1.715 sum -9.336 -4.352 -16.653 19.581 Atomic orbital electron populations 1.21765 0.77757 1.04473 1.02056 1.45774 1.08877 1.08344 1.74186 1.19569 0.87782 0.84152 0.75664 1.90708 1.69921 1.32357 1.50108 1.22442 0.93081 1.02968 0.96280 1.20482 0.80155 0.84343 0.84609 1.90647 1.44232 1.24739 1.85286 1.49063 1.58829 1.25066 1.06850 1.20819 0.93821 0.96156 0.84402 1.22169 0.96321 0.98522 0.98303 1.21328 0.91781 0.94078 0.85582 0.91119 1.23385 0.96299 1.00554 0.99882 1.23212 0.97120 0.99399 0.98805 1.21632 0.91375 0.91051 0.92346 0.91056 1.22302 0.97991 0.98821 0.97786 1.45317 1.20075 1.65768 1.01130 1.19262 0.92989 1.41570 0.82660 0.90788 1.25550 0.95125 1.02824 1.01143 1.70046 0.97724 1.54771 1.35456 0.85222 0.76585 0.77607 0.80703 1.21682 1.19756 1.22436 1.22839 1.02890 0.98046 0.89681 1.22818 1.03654 0.94624 0.95366 1.22964 1.01636 0.93583 0.97689 0.87311 0.92997 0.91864 0.75212 0.70601 0.90474 0.93560 0.93237 0.91722 0.88820 0.89039 0.91190 0.91046 0.92663 0.94445 0.88437 0.89165 0.89534 0.88478 0.89694 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.71 127.77 1.37 2.51 16 2 N -0.72 -12.93 5.71 -484.52 -2.77 -15.70 16 3 C 0.54 12.79 6.44 87.66 0.56 13.36 16 4 O -0.55 -16.02 15.95 -3.03 -0.05 -16.07 16 5 C -0.14 -3.24 1.04 -53.15 -0.06 -3.29 16 6 C 0.52 15.18 6.71 87.66 0.59 15.77 16 7 O -0.57 -19.55 15.53 -3.02 -0.05 -19.60 16 8 N -0.73 -22.69 2.76 -442.07 -1.22 -23.91 16 9 C 0.15 5.62 3.15 45.09 0.14 5.76 16 10 C -0.11 -4.87 5.38 30.88 0.17 -4.70 16 11 C 0.18 8.14 3.13 45.42 0.14 8.28 16 12 H 0.07 3.77 6.44 -2.38 -0.02 3.76 16 13 C -0.16 -5.84 5.78 31.76 0.18 -5.65 16 14 C -0.15 -4.93 5.78 31.76 0.18 -4.75 16 15 C 0.14 5.60 4.29 45.27 0.19 5.80 16 16 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 17 C -0.13 -4.70 5.47 30.71 0.17 -4.53 16 18 N -0.60 -29.01 2.82 -638.07 -1.80 -30.81 16 19 C -0.24 -12.68 10.37 84.03 0.87 -11.81 16 20 H 0.07 3.88 7.84 -2.91 -0.02 3.86 16 21 C -0.05 -2.83 5.43 84.86 0.46 -2.37 16 22 N -0.93 -53.32 10.48 21.65 0.23 -53.10 16 23 Si 0.97 44.80 29.56 68.60 2.03 46.83 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 27 C -0.10 -1.74 6.89 31.12 0.21 -1.52 16 28 C -0.13 -2.04 7.81 31.12 0.24 -1.80 16 29 C -0.12 -2.53 7.09 31.12 0.22 -2.31 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.41 6.34 8.83 -92.71 -0.82 5.53 16 34 H 0.43 13.20 1.90 -116.29 -0.22 12.98 16 35 H 0.08 2.97 6.91 -2.39 -0.02 2.95 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 2.50 7.85 -2.38 -0.02 2.48 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.09 3.04 5.27 -2.38 -0.01 3.03 16 40 H 0.09 2.84 5.25 -2.39 -0.01 2.83 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.25 13.88 8.31 -92.70 -0.77 13.11 16 45 H 0.10 1.90 7.74 -2.39 -0.02 1.89 16 46 H 0.09 1.33 8.10 -2.38 -0.02 1.31 16 47 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.08 1.92 7.34 -2.39 -0.02 1.90 16 50 H 0.10 1.98 8.09 -2.39 -0.02 1.96 16 Total: -1.00 -66.62 379.04 1.95 -64.67 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: -0.08 Total: 38.94 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.66 Total: 8.74 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -5.56 Total: -123.51 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.10 Total: -35.67 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -66.62 1.95 -64.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317098895.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.788 kcal (2) G-P(sol) polarization free energy of solvation -66.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds