Wall clock time and date at job start Tue Mar 31 2020 18:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 119.99806 * 2 1 4 4 O 1.21276 * 120.00259 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99994 * 0.02562 * 3 2 1 6 6 H 1.08999 * 115.51709 * 34.51851 * 5 3 2 7 7 C 1.52992 * 117.46347 * 180.02562 * 5 3 2 8 8 H 1.09004 * 119.29841 * 355.35586 * 7 5 3 9 9 C 1.54266 * 118.20068 * 201.21483 * 7 5 3 10 10 C 1.54894 * 104.31305 * 270.92893 * 9 7 5 11 11 C 1.55238 * 102.58338 * 37.93170 * 10 9 7 12 12 C 1.53869 * 60.88009 * 107.06404 * 7 5 3 13 13 H 1.08997 * 121.33818 * 251.54220 * 12 7 5 14 14 C 1.46493 * 120.00752 * 180.02562 * 2 1 3 15 15 H 1.09003 * 110.27965 * 177.91049 * 14 2 1 16 16 C 1.54597 * 110.30926 * 55.71228 * 14 2 1 17 17 C 1.54933 * 102.92330 * 219.13249 * 16 14 2 18 18 N 1.48532 * 103.22768 * 37.41184 * 17 16 14 19 19 C 1.46905 * 111.00150 * 200.27702 * 18 17 16 20 20 C 1.50700 * 109.47426 * 287.40279 * 19 18 17 21 21 O 1.21294 * 119.99827 * 359.97438 * 20 19 18 22 22 N 1.34775 * 119.99873 * 179.97438 * 20 19 18 23 23 C 1.37108 * 119.99780 * 179.97438 * 22 20 19 24 24 H 1.07999 * 119.99866 * 0.02562 * 23 22 20 25 25 C 1.38948 * 119.99876 * 179.97438 * 23 22 20 26 26 N 1.31409 * 119.99802 * 180.02562 * 25 23 22 27 27 Si 1.86804 * 119.99941 * 0.02562 * 25 23 22 28 28 H 1.48505 * 109.46939 * 90.00140 * 27 25 23 29 29 H 1.48500 * 109.47048 * 209.99908 * 27 25 23 30 30 H 1.48495 * 109.47149 * 329.99867 * 27 25 23 31 31 C 1.47899 * 105.82158 * 320.79304 * 18 17 16 32 32 H 1.08997 * 109.47490 * 90.00068 * 1 2 3 33 33 H 1.09005 * 109.46348 * 210.00163 * 1 2 3 34 34 H 1.09000 * 109.47103 * 329.99458 * 1 2 3 35 35 H 1.09002 * 110.48629 * 29.67646 * 9 7 5 36 36 H 1.08998 * 110.48744 * 152.18550 * 9 7 5 37 37 H 1.08996 * 110.75388 * 156.31523 * 10 9 7 38 38 H 1.08993 * 110.76071 * 279.69749 * 10 9 7 39 39 H 1.09005 * 110.46917 * 203.39204 * 11 10 9 40 40 H 1.09006 * 110.46947 * 80.77225 * 11 10 9 41 41 H 1.08998 * 110.72253 * 337.48780 * 16 14 2 42 42 H 1.08995 * 110.72547 * 100.77019 * 16 14 2 43 43 H 1.09002 * 110.66774 * 278.97420 * 17 16 14 44 44 H 1.09006 * 110.67026 * 155.84648 * 17 16 14 45 45 H 1.09006 * 109.46768 * 47.39583 * 19 18 17 46 46 H 1.08992 * 109.47512 * 167.39545 * 19 18 17 47 47 H 0.96996 * 120.00005 * 359.97438 * 22 20 19 48 48 H 0.96999 * 119.99877 * 180.02562 * 26 25 23 49 49 H 1.08998 * 109.91974 * 265.97620 * 31 18 17 50 50 H 1.08998 * 109.91393 * 144.68076 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1674 -0.0005 5 6 1.3853 2.4724 0.0006 6 1 0.4488 2.4736 0.5584 7 6 2.2081 3.7622 -0.0001 8 1 3.2938 3.7023 0.0761 9 6 1.5320 5.0584 0.4924 10 6 0.8848 5.6599 -0.7797 11 6 0.3740 4.3992 -1.5277 12 6 1.4719 3.3431 -1.2845 13 1 2.0150 2.9744 -2.1546 14 6 2.1976 -1.2686 -0.0006 15 1 3.2714 -1.0847 -0.0378 16 6 1.7587 -2.1412 -1.1989 17 6 1.7261 -3.5677 -0.5952 18 7 1.2066 -3.3438 0.7782 19 6 1.5448 -4.4697 1.6591 20 6 0.6968 -5.6622 1.2984 21 8 -0.1102 -5.5818 0.3965 22 7 0.8353 -6.8178 1.9779 23 6 0.0634 -7.9025 1.6501 24 1 -0.6552 -7.8310 0.8471 25 6 0.2065 -9.0941 2.3503 26 7 -0.5329 -10.1338 2.0358 27 14 1.4501 -9.2179 3.7388 28 1 0.8030 -8.8322 5.0186 29 1 1.9460 -10.6143 3.8361 30 1 2.5896 -8.3058 3.4656 31 6 1.8396 -2.0931 1.2498 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3632 -0.8901 0.5139 34 1 -0.3633 0.8899 0.5139 35 1 0.7696 4.8316 1.2377 36 1 2.2739 5.7433 0.9032 37 1 0.0567 6.3184 -0.5174 38 1 1.6267 6.1896 -1.3772 39 1 0.2709 4.6038 -2.5934 40 1 -0.5755 4.0658 -1.1087 41 1 0.7687 -1.8474 -1.5478 42 1 2.4873 -2.0809 -2.0073 43 1 2.7286 -3.9946 -0.5625 44 1 1.0517 -4.2099 -1.1617 45 1 2.5981 -4.7227 1.5372 46 1 1.3560 -4.1897 2.6954 47 1 1.4810 -6.8821 2.6989 48 1 -0.4333 -10.9656 2.5248 49 1 2.7434 -2.3240 1.8137 50 1 1.1412 -1.5361 1.8744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318393169.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:23 Heat of formation + Delta-G solvation = -47.691268 kcal Electronic energy + Delta-G solvation = -28892.951401 eV Core-core repulsion = 24920.262713 eV Total energy + Delta-G solvation = -3972.688688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.68642 -40.68580 -39.79652 -38.76755 -36.37688 -35.85307 -33.76249 -33.01036 -32.19240 -29.79591 -29.11629 -28.58287 -27.64104 -26.04317 -24.98625 -22.47583 -22.03166 -21.27219 -21.23181 -20.60830 -20.22427 -19.96163 -18.55446 -17.85600 -17.60004 -17.01693 -16.61483 -16.48563 -16.13796 -15.96187 -15.58191 -15.36944 -15.11215 -14.77276 -14.49533 -14.33789 -14.18613 -14.01965 -13.93200 -13.86326 -13.37187 -13.17777 -13.03711 -13.00364 -12.78681 -12.68578 -12.44467 -12.41771 -12.26742 -12.22014 -11.98116 -11.96057 -11.79734 -11.68495 -11.48368 -11.08107 -10.93003 -10.61007 -10.41407 -10.23091 -9.71854 -9.37502 -8.40523 -6.00911 1.30063 1.33166 1.35330 1.43907 1.84052 1.97203 2.22977 2.61076 2.68347 3.14729 3.22668 3.31088 3.58970 3.63686 3.71771 3.72995 3.91342 4.02099 4.15327 4.20605 4.23915 4.24664 4.29180 4.36220 4.38489 4.45272 4.47587 4.53699 4.60905 4.66922 4.72407 4.75748 4.83020 4.89225 4.97621 5.01414 5.02688 5.09782 5.16050 5.22865 5.23471 5.29104 5.49147 5.51383 5.53167 5.83600 5.87822 5.99836 6.33772 6.60749 6.89629 7.07472 7.41121 7.98400 8.77081 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032834 B = 0.001917 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.569052 B =14602.994912 C =14798.338991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.597 5.597 3 C 0.540 3.460 4 O -0.586 6.586 5 C -0.165 4.165 6 H 0.146 0.854 7 C -0.138 4.138 8 H 0.097 0.903 9 C -0.094 4.094 10 C -0.120 4.120 11 C -0.093 4.093 12 C -0.131 4.131 13 H 0.102 0.898 14 C 0.136 3.864 15 H 0.096 0.904 16 C -0.119 4.119 17 C 0.041 3.959 18 N -0.508 5.508 19 C 0.044 3.956 20 C 0.454 3.546 21 O -0.604 6.604 22 N -0.594 5.594 23 C -0.325 4.325 24 H 0.056 0.944 25 C -0.015 4.015 26 N -0.935 5.935 27 Si 0.964 3.036 28 H -0.257 1.257 29 H -0.276 1.276 30 H -0.233 1.233 31 C 0.032 3.968 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.120 0.880 47 H 0.388 0.612 48 H 0.278 0.722 49 H 0.064 0.936 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 31.974 -1.040 32.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.328 5.328 3 C 0.330 3.670 4 O -0.467 6.467 5 C -0.186 4.186 6 H 0.163 0.837 7 C -0.157 4.157 8 H 0.115 0.885 9 C -0.132 4.132 10 C -0.158 4.158 11 C -0.130 4.130 12 C -0.150 4.150 13 H 0.120 0.880 14 C 0.031 3.969 15 H 0.114 0.886 16 C -0.158 4.158 17 C -0.087 4.087 18 N -0.233 5.233 19 C -0.087 4.087 20 C 0.242 3.758 21 O -0.487 6.487 22 N -0.236 5.236 23 C -0.455 4.455 24 H 0.074 0.926 25 C -0.214 4.214 26 N -0.576 5.576 27 Si 0.784 3.216 28 H -0.181 1.181 29 H -0.201 1.201 30 H -0.157 1.157 31 C -0.097 4.097 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.138 0.862 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.617 31.861 -1.611 32.392 hybrid contribution 1.323 -1.434 0.584 2.036 sum 6.940 30.427 -1.027 31.225 Atomic orbital electron populations 1.22002 0.77344 1.04480 1.03089 1.47850 1.08218 1.04611 1.72085 1.20166 0.86897 0.85389 0.74551 1.90654 1.15804 1.87895 1.52316 1.22806 1.02348 0.88439 1.04974 0.83658 1.23302 0.98290 0.92811 1.01312 0.88522 1.22039 0.99648 0.93246 0.98222 1.22767 1.00533 0.97082 0.95380 1.22103 0.96674 0.92584 1.01626 1.23694 1.01725 0.99111 0.90471 0.88019 1.21830 0.97268 0.83019 0.94778 0.88610 1.22771 1.02937 0.92942 0.97174 1.23171 0.98162 0.97347 0.90034 1.64407 1.55320 1.01575 1.01985 1.22035 0.97587 0.89547 0.99568 1.20784 0.86391 0.84524 0.84111 1.90531 1.40330 1.84169 1.33687 1.42041 1.37104 1.10718 1.33741 1.18992 1.18150 0.90204 1.18105 0.92568 1.26085 1.00055 0.93979 1.01266 1.69802 1.41536 1.03318 1.42901 0.85382 0.78842 0.79251 0.78147 1.18136 1.20112 1.15664 1.23250 0.98934 0.90517 0.96969 0.91602 0.90571 0.88578 0.90301 0.90505 0.89455 0.91214 0.90090 0.89925 0.89975 0.89701 0.93282 0.91583 0.90267 0.86242 0.77624 0.91208 0.91757 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 8.86 127.77 1.13 2.23 16 2 N -0.60 -11.97 2.77 -817.67 -2.27 -14.23 16 3 C 0.54 12.09 7.46 87.66 0.65 12.74 16 4 O -0.59 -17.74 15.68 -3.02 -0.05 -17.79 16 5 C -0.17 -2.56 4.96 -10.69 -0.05 -2.61 16 6 H 0.15 1.56 6.44 -2.39 -0.02 1.54 16 7 C -0.14 -2.13 6.30 -10.07 -0.06 -2.19 16 8 H 0.10 1.94 7.79 -2.39 -0.02 1.92 16 9 C -0.09 -0.92 6.61 31.67 0.21 -0.71 16 10 C -0.12 -0.89 6.94 32.01 0.22 -0.67 16 11 C -0.09 -0.79 6.65 31.79 0.21 -0.58 16 12 C -0.13 -1.82 6.75 -9.22 -0.06 -1.88 16 13 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 14 C 0.14 3.05 3.39 45.87 0.16 3.21 16 15 H 0.10 2.40 6.97 -2.39 -0.02 2.38 16 16 C -0.12 -2.79 6.65 31.80 0.21 -2.58 16 17 C 0.04 1.20 5.93 86.65 0.51 1.72 16 18 N -0.51 -15.06 4.91 -887.57 -4.35 -19.42 16 19 C 0.04 1.36 5.19 85.56 0.44 1.81 16 20 C 0.45 20.43 7.61 87.66 0.67 21.10 16 21 O -0.60 -33.04 14.64 -3.07 -0.04 -33.08 16 22 N -0.59 -27.99 5.09 -306.98 -1.56 -29.56 16 23 C -0.33 -19.04 10.16 84.04 0.85 -18.19 16 24 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 25 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 26 N -0.93 -56.44 13.96 21.66 0.30 -56.14 16 27 Si 0.96 38.93 27.74 68.60 1.90 40.84 16 28 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 29 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 30 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 31 C 0.03 0.72 5.83 86.45 0.50 1.22 16 32 H 0.07 0.92 7.87 -2.39 -0.02 0.90 16 33 H 0.08 1.38 6.97 -2.38 -0.02 1.36 16 34 H 0.10 0.95 6.00 -2.39 -0.01 0.94 16 35 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.08 1.92 6.84 -2.39 -0.02 1.90 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.05 1.35 7.81 -2.39 -0.02 1.34 16 44 H 0.07 2.44 7.10 -2.38 -0.02 2.42 16 45 H 0.08 2.07 7.83 -2.38 -0.02 2.06 16 46 H 0.12 3.03 8.08 -2.39 -0.02 3.01 16 47 H 0.39 15.21 5.76 -92.71 -0.53 14.67 16 48 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 49 H 0.06 1.32 7.77 -2.39 -0.02 1.30 16 50 H 0.09 1.97 7.10 -2.39 -0.02 1.95 16 Total: -1.00 -79.40 391.48 0.35 -79.05 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: 0.36 Total: 36.10 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 6.07 Total: 14.23 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -7.88 Total: -119.34 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -0.09 Total: -50.87 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.90 Total: 40.84 kcal Total: -79.40 0.35 -79.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318393169.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.354 kcal (2) G-P(sol) polarization free energy of solvation -79.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds