Wall clock time and date at job start Tue Mar 31 2020 18:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34774 * 119.99857 * 2 1 4 4 O 1.21282 * 120.00484 * 5.13741 * 3 2 1 5 5 C 1.50703 * 119.99851 * 185.13448 * 3 2 1 6 6 C 1.50707 * 115.54922 * 297.16392 * 5 3 2 7 7 O 1.21284 * 119.99159 * 108.14027 * 6 5 3 8 8 N 1.34770 * 119.99998 * 288.13913 * 6 5 3 9 9 C 1.46941 * 120.54803 * 182.63658 * 8 6 5 10 10 C 1.53344 * 108.68467 * 125.62527 * 9 8 6 11 11 C 1.52108 * 109.44124 * 53.30433 * 10 9 8 12 12 C 1.54398 * 110.51015 * 64.08575 * 11 10 9 13 13 C 1.54462 * 102.86578 * 83.33065 * 12 11 10 14 14 N 1.47077 * 107.29775 * 21.50515 * 13 12 11 15 15 C 1.36937 * 125.62893 * 180.95916 * 14 13 12 16 16 H 1.07996 * 120.00040 * 172.04437 * 15 14 13 17 17 C 1.38819 * 120.00096 * 352.05106 * 15 14 13 18 18 N 1.31616 * 120.00137 * 167.80416 * 17 15 14 19 19 Si 1.86800 * 119.99649 * 347.80462 * 17 15 14 20 20 H 1.48497 * 109.47100 * 183.76970 * 19 17 15 21 21 H 1.48500 * 109.47096 * 303.76858 * 19 17 15 22 22 H 1.48502 * 109.47480 * 63.76833 * 19 17 15 23 23 C 1.47577 * 108.74619 * 1.23144 * 14 13 12 24 24 C 1.52103 * 111.60086 * 300.69353 * 11 10 9 25 25 C 1.46919 * 120.55707 * 2.61180 * 8 6 5 26 26 C 1.52995 * 117.49899 * 82.83652 * 5 3 2 27 27 C 1.53007 * 117.49891 * 151.49929 * 5 3 2 28 28 H 1.09002 * 109.46622 * 64.62630 * 1 2 3 29 29 H 1.08998 * 109.46570 * 184.62881 * 1 2 3 30 30 H 1.09001 * 109.46860 * 304.62776 * 1 2 3 31 31 H 0.96999 * 119.99867 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.60117 * 5.86553 * 9 8 6 33 33 H 1.08999 * 109.73477 * 245.46746 * 9 8 6 34 34 H 1.08995 * 109.47466 * 293.31366 * 10 9 8 35 35 H 1.09003 * 109.47516 * 173.29417 * 10 9 8 36 36 H 1.08997 * 110.73205 * 324.98924 * 12 11 10 37 37 H 1.08996 * 110.88671 * 201.74634 * 12 11 10 38 38 H 1.08997 * 109.87674 * 262.08055 * 13 12 11 39 39 H 1.08997 * 109.99895 * 141.00300 * 13 12 11 40 40 H 0.96998 * 120.00033 * 354.89808 * 18 17 15 41 41 H 1.09002 * 110.37671 * 95.25943 * 23 14 13 42 42 H 1.08994 * 110.37592 * 217.60688 * 23 14 13 43 43 H 1.09003 * 109.47666 * 179.29132 * 24 11 10 44 44 H 1.09002 * 109.47662 * 299.30724 * 24 11 10 45 45 H 1.08998 * 109.60402 * 354.13071 * 25 8 6 46 46 H 1.09003 * 109.60407 * 114.44615 * 25 8 6 47 47 H 1.08993 * 117.50116 * 214.99897 * 26 5 3 48 48 H 1.08995 * 117.49964 * 0.02742 * 26 5 3 49 49 H 1.09000 * 117.49196 * 359.97438 * 27 5 3 50 50 H 1.08996 * 117.49641 * 144.97174 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5362 2.2155 0.0940 5 6 3.6414 1.1698 -0.1168 6 6 4.3821 0.4967 1.0099 7 8 4.9278 -0.5705 0.8246 8 7 4.4381 1.0806 2.2233 9 6 5.2050 0.4636 3.3143 10 6 6.2009 1.4947 3.8589 11 6 5.4586 2.7703 4.2269 12 6 4.4640 2.5046 5.3776 13 6 5.3561 2.6095 6.6343 14 7 6.5435 3.3941 6.2634 15 6 7.5897 3.6982 7.0930 16 1 8.4755 4.1700 6.6943 17 6 7.5116 3.4000 8.4465 18 7 8.5900 3.4659 9.1982 19 14 5.8760 2.9050 9.2010 20 1 6.0398 2.7293 10.6664 21 1 4.8692 3.9647 8.9390 22 1 5.4187 1.6276 8.5973 23 6 6.4185 3.8050 4.8516 24 6 4.7381 3.3650 3.0266 25 6 3.7338 2.3448 2.4770 26 6 4.2410 1.0622 -1.5202 27 6 4.2976 2.3915 -0.7632 28 1 -0.3632 0.4404 -0.9286 29 1 -0.3632 -1.0243 0.0829 30 1 -0.3633 0.5840 0.8456 31 1 1.9500 -0.8400 0.0004 32 1 5.7465 -0.4034 2.9359 33 1 4.5281 0.1531 4.1102 34 1 6.9480 1.7160 3.0968 35 1 6.6930 1.0922 4.7444 36 1 4.0331 1.5071 5.2926 37 1 3.6803 3.2618 5.3965 38 1 5.6566 1.6136 6.9596 39 1 4.8144 3.1130 7.4350 40 1 9.4523 3.6504 8.7941 41 1 5.9959 4.8076 4.7841 42 1 7.3895 3.7675 4.3580 43 1 4.2090 4.2680 3.3311 44 1 5.4646 3.6129 2.2528 45 1 3.3055 2.7179 1.5468 46 1 2.9396 2.1811 3.2054 47 1 5.1713 0.5047 -1.6287 48 1 3.5489 0.9900 -2.3591 49 1 3.6425 3.1931 -1.1043 50 1 5.2648 2.7086 -0.3733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319145155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:54 Heat of formation + Delta-G solvation = -3.291442 kcal Electronic energy + Delta-G solvation = -30940.602168 eV Core-core repulsion = 26969.838801 eV Total energy + Delta-G solvation = -3970.763367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31033 -39.90981 -38.80632 -36.48989 -36.07401 -34.97924 -33.19124 -31.31940 -31.22777 -29.07157 -28.13322 -27.29741 -25.12805 -23.77865 -23.16344 -22.94448 -22.83752 -21.47993 -20.42802 -19.75184 -18.66946 -17.96541 -17.14461 -16.52885 -16.41310 -16.22359 -15.50861 -15.39951 -15.22560 -15.08826 -14.77560 -14.36968 -13.86188 -13.69330 -13.43266 -13.38246 -13.26018 -13.10072 -12.93688 -12.71924 -12.52942 -12.27652 -12.03672 -11.85457 -11.53126 -11.46651 -11.28885 -11.17440 -11.01420 -10.92653 -10.54005 -10.38801 -10.27662 -10.23558 -9.90885 -9.77071 -9.57717 -9.26203 -8.91349 -8.78193 -8.70260 -6.98156 -6.27964 -3.18678 1.99939 2.25088 2.64357 2.68807 3.36562 3.41326 3.49201 3.71708 4.08210 4.20466 4.34778 4.39378 4.63320 4.75646 4.75814 4.80329 4.89348 5.02348 5.07552 5.13043 5.16386 5.22901 5.27287 5.32282 5.37174 5.42355 5.46119 5.55208 5.63799 5.66847 5.70086 5.76086 5.83906 5.90571 5.92351 5.97433 6.05652 6.22056 6.30935 6.33480 6.41617 6.50657 6.64650 6.77245 6.78913 6.96954 7.18969 7.68255 7.71748 7.88389 8.35640 9.07396 9.58860 10.26073 11.23148 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.003056 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.483479 B = 9159.731784 C = 9503.892662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.728 5.728 3 C 0.559 3.441 4 O -0.525 6.525 5 C -0.198 4.198 6 C 0.555 3.445 7 O -0.536 6.536 8 N -0.594 5.594 9 C 0.110 3.890 10 C -0.110 4.110 11 C -0.072 4.072 12 C -0.122 4.122 13 C 0.103 3.897 14 N -0.612 5.612 15 C -0.318 4.318 16 H 0.078 0.922 17 C -0.025 4.025 18 N -0.933 5.933 19 Si 1.074 2.926 20 H -0.304 1.304 21 H -0.300 1.300 22 H -0.285 1.285 23 C 0.148 3.852 24 C -0.114 4.114 25 C 0.101 3.899 26 C -0.127 4.127 27 C -0.129 4.129 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.407 0.593 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.024 0.976 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.070 0.930 47 H 0.114 0.886 48 H 0.107 0.893 49 H 0.115 0.885 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.168 -6.925 -22.673 28.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.379 5.379 3 C 0.344 3.656 4 O -0.401 6.401 5 C -0.204 4.204 6 C 0.340 3.660 7 O -0.413 6.413 8 N -0.326 5.326 9 C -0.012 4.012 10 C -0.149 4.149 11 C -0.073 4.073 12 C -0.159 4.159 13 C -0.022 4.022 14 N -0.340 5.340 15 C -0.445 4.445 16 H 0.095 0.905 17 C -0.224 4.224 18 N -0.575 5.575 19 Si 0.909 3.091 20 H -0.232 1.232 21 H -0.229 1.229 22 H -0.212 1.212 23 C 0.022 3.978 24 C -0.153 4.153 25 C -0.022 4.022 26 C -0.164 4.164 27 C -0.167 4.167 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.241 0.759 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.113 0.887 46 H 0.088 0.912 47 H 0.132 0.868 48 H 0.125 0.875 49 H 0.134 0.866 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.987 -7.097 -21.196 27.481 hybrid contribution 0.857 0.136 -1.285 1.551 sum -15.130 -6.961 -22.481 27.978 Atomic orbital electron populations 1.21604 0.78930 1.02661 1.02517 1.45749 1.08003 1.08798 1.75340 1.19070 0.86871 0.83890 0.75780 1.90732 1.69327 1.31352 1.48661 1.21429 0.92983 1.08778 0.97255 1.19056 0.80107 0.84589 0.82200 1.90708 1.46886 1.21426 1.82274 1.48095 1.49923 1.24073 1.10529 1.21819 0.94330 0.96726 0.88309 1.21636 0.97086 0.94521 1.01611 1.21119 0.96183 0.96125 0.93912 1.22637 0.97267 1.01081 0.94957 1.22122 0.88676 0.95935 0.95469 1.44843 1.20337 1.60889 1.07929 1.20185 0.94094 1.39596 0.90608 0.90454 1.25806 1.04851 0.99481 0.92241 1.70886 0.98682 1.50648 1.37267 0.83815 0.74560 0.76218 0.74476 1.23232 1.22888 1.21247 1.21522 0.96216 0.94119 0.85900 1.21710 0.98122 0.97868 0.97597 1.21988 0.94622 0.83198 1.02354 1.23098 1.02901 0.99894 0.90531 1.23157 1.02149 0.91187 1.00164 0.92171 0.90382 0.91650 0.75884 0.89022 0.91009 0.91778 0.89390 0.91462 0.91514 0.93488 0.95186 0.92958 0.95861 0.93905 0.90293 0.91469 0.88695 0.91172 0.86794 0.87494 0.86626 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.73 59.85 0.64 1.18 16 2 N -0.73 -5.87 5.71 -67.07 -0.38 -6.25 16 3 C 0.56 5.79 6.34 -10.98 -0.07 5.72 16 4 O -0.52 -6.75 15.62 5.56 0.09 -6.66 16 5 C -0.20 -1.94 1.14 -156.81 -0.18 -2.12 16 6 C 0.55 6.76 6.90 -10.98 -0.08 6.68 16 7 O -0.54 -7.87 16.27 5.55 0.09 -7.78 16 8 N -0.59 -7.19 2.96 -172.57 -0.51 -7.70 16 9 C 0.11 1.42 6.11 -3.62 -0.02 1.40 16 10 C -0.11 -1.63 4.87 -27.01 -0.13 -1.76 16 11 C -0.07 -1.10 0.55 -153.98 -0.08 -1.18 16 12 C -0.12 -1.95 4.92 -25.23 -0.12 -2.08 16 13 C 0.10 2.19 4.24 -2.96 -0.01 2.18 16 14 N -0.61 -14.74 3.34 -170.18 -0.57 -15.31 16 15 C -0.32 -9.09 10.59 -15.06 -0.16 -9.25 16 16 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 17 C -0.03 -0.75 5.50 -17.43 -0.10 -0.84 16 18 N -0.93 -29.63 13.70 55.49 0.76 -28.87 16 19 Si 1.07 27.14 24.51 -169.99 -4.17 22.97 16 20 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 21 H -0.30 -7.32 6.63 56.52 0.37 -6.95 16 22 H -0.28 -6.54 5.30 56.52 0.30 -6.24 16 23 C 0.15 2.88 6.16 -2.75 -0.02 2.86 16 24 C -0.11 -1.39 4.84 -27.01 -0.13 -1.53 16 25 C 0.10 1.15 5.79 -3.64 -0.02 1.13 16 26 C -0.13 -0.98 9.78 -26.69 -0.26 -1.24 16 27 C -0.13 -1.06 8.90 -26.69 -0.24 -1.30 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 31 H 0.41 2.84 8.83 -40.82 -0.36 2.48 16 32 H 0.09 1.24 7.01 -51.93 -0.36 0.87 16 33 H 0.07 0.90 6.56 -51.93 -0.34 0.56 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.50 7.82 -51.93 -0.41 1.10 16 36 H 0.07 0.96 6.18 -51.93 -0.32 0.64 16 37 H 0.07 1.00 7.98 -51.93 -0.41 0.58 16 38 H 0.05 1.06 6.25 -51.93 -0.32 0.73 16 39 H 0.03 0.70 3.96 -51.93 -0.21 0.49 16 40 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 41 H 0.02 0.46 8.00 -51.93 -0.42 0.04 16 42 H 0.04 0.85 8.03 -51.93 -0.42 0.43 16 43 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.06 4.26 -51.93 -0.22 0.84 16 46 H 0.07 0.81 7.63 -51.93 -0.40 0.41 16 47 H 0.11 0.90 8.11 -51.93 -0.42 0.48 16 48 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.12 0.91 7.95 -51.93 -0.41 0.50 16 50 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -34.82 378.92 -8.06 -42.88 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.10 Total: 1.16 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -0.98 Total: -0.15 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.70 Total: -58.14 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.18 Total: -14.44 kcal Atomic # 14 Polarization: 27.14 SS G_CDS: -4.17 Total: 22.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.82 -8.06 -42.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319145155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.589 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds