Wall clock time and date at job start Tue Mar 31 2020 18:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34774 * 119.99857 * 2 1 4 4 O 1.21282 * 120.00484 * 5.13741 * 3 2 1 5 5 C 1.50703 * 119.99851 * 185.13448 * 3 2 1 6 6 C 1.50707 * 115.54922 * 297.16392 * 5 3 2 7 7 O 1.21284 * 119.99159 * 108.14027 * 6 5 3 8 8 N 1.34770 * 119.99998 * 288.13913 * 6 5 3 9 9 C 1.46941 * 120.54803 * 182.63658 * 8 6 5 10 10 C 1.53344 * 108.68467 * 125.62527 * 9 8 6 11 11 C 1.52108 * 109.44124 * 53.30433 * 10 9 8 12 12 C 1.54398 * 110.51015 * 64.08575 * 11 10 9 13 13 C 1.54462 * 102.86578 * 83.33065 * 12 11 10 14 14 N 1.47077 * 107.29775 * 21.50515 * 13 12 11 15 15 C 1.36937 * 125.62893 * 180.95916 * 14 13 12 16 16 H 1.07996 * 120.00040 * 172.04437 * 15 14 13 17 17 C 1.38819 * 120.00096 * 352.05106 * 15 14 13 18 18 N 1.31616 * 120.00137 * 167.80416 * 17 15 14 19 19 Si 1.86800 * 119.99649 * 347.80462 * 17 15 14 20 20 H 1.48497 * 109.47100 * 183.76970 * 19 17 15 21 21 H 1.48500 * 109.47096 * 303.76858 * 19 17 15 22 22 H 1.48502 * 109.47480 * 63.76833 * 19 17 15 23 23 C 1.47577 * 108.74619 * 1.23144 * 14 13 12 24 24 C 1.52103 * 111.60086 * 300.69353 * 11 10 9 25 25 C 1.46919 * 120.55707 * 2.61180 * 8 6 5 26 26 C 1.52995 * 117.49899 * 82.83652 * 5 3 2 27 27 C 1.53007 * 117.49891 * 151.49929 * 5 3 2 28 28 H 1.09002 * 109.46622 * 64.62630 * 1 2 3 29 29 H 1.08998 * 109.46570 * 184.62881 * 1 2 3 30 30 H 1.09001 * 109.46860 * 304.62776 * 1 2 3 31 31 H 0.96999 * 119.99867 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.60117 * 5.86553 * 9 8 6 33 33 H 1.08999 * 109.73477 * 245.46746 * 9 8 6 34 34 H 1.08995 * 109.47466 * 293.31366 * 10 9 8 35 35 H 1.09003 * 109.47516 * 173.29417 * 10 9 8 36 36 H 1.08997 * 110.73205 * 324.98924 * 12 11 10 37 37 H 1.08996 * 110.88671 * 201.74634 * 12 11 10 38 38 H 1.08997 * 109.87674 * 262.08055 * 13 12 11 39 39 H 1.08997 * 109.99895 * 141.00300 * 13 12 11 40 40 H 0.96998 * 120.00033 * 354.89808 * 18 17 15 41 41 H 1.09002 * 110.37671 * 95.25943 * 23 14 13 42 42 H 1.08994 * 110.37592 * 217.60688 * 23 14 13 43 43 H 1.09003 * 109.47666 * 179.29132 * 24 11 10 44 44 H 1.09002 * 109.47662 * 299.30724 * 24 11 10 45 45 H 1.08998 * 109.60402 * 354.13071 * 25 8 6 46 46 H 1.09003 * 109.60407 * 114.44615 * 25 8 6 47 47 H 1.08993 * 117.50116 * 214.99897 * 26 5 3 48 48 H 1.08995 * 117.49964 * 0.02742 * 26 5 3 49 49 H 1.09000 * 117.49196 * 359.97438 * 27 5 3 50 50 H 1.08996 * 117.49641 * 144.97174 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5362 2.2155 0.0940 5 6 3.6414 1.1698 -0.1168 6 6 4.3821 0.4967 1.0099 7 8 4.9278 -0.5705 0.8246 8 7 4.4381 1.0806 2.2233 9 6 5.2050 0.4636 3.3143 10 6 6.2009 1.4947 3.8589 11 6 5.4586 2.7703 4.2269 12 6 4.4640 2.5046 5.3776 13 6 5.3561 2.6095 6.6343 14 7 6.5435 3.3941 6.2634 15 6 7.5897 3.6982 7.0930 16 1 8.4755 4.1700 6.6943 17 6 7.5116 3.4000 8.4465 18 7 8.5900 3.4659 9.1982 19 14 5.8760 2.9050 9.2010 20 1 6.0398 2.7293 10.6664 21 1 4.8692 3.9647 8.9390 22 1 5.4187 1.6276 8.5973 23 6 6.4185 3.8050 4.8516 24 6 4.7381 3.3650 3.0266 25 6 3.7338 2.3448 2.4770 26 6 4.2410 1.0622 -1.5202 27 6 4.2976 2.3915 -0.7632 28 1 -0.3632 0.4404 -0.9286 29 1 -0.3632 -1.0243 0.0829 30 1 -0.3633 0.5840 0.8456 31 1 1.9500 -0.8400 0.0004 32 1 5.7465 -0.4034 2.9359 33 1 4.5281 0.1531 4.1102 34 1 6.9480 1.7160 3.0968 35 1 6.6930 1.0922 4.7444 36 1 4.0331 1.5071 5.2926 37 1 3.6803 3.2618 5.3965 38 1 5.6566 1.6136 6.9596 39 1 4.8144 3.1130 7.4350 40 1 9.4523 3.6504 8.7941 41 1 5.9959 4.8076 4.7841 42 1 7.3895 3.7675 4.3580 43 1 4.2090 4.2680 3.3311 44 1 5.4646 3.6129 2.2528 45 1 3.3055 2.7179 1.5468 46 1 2.9396 2.1811 3.2054 47 1 5.1713 0.5047 -1.6287 48 1 3.5489 0.9900 -2.3591 49 1 3.6425 3.1931 -1.1043 50 1 5.2648 2.7086 -0.3733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319145155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:53 Heat of formation + Delta-G solvation = -28.609156 kcal Electronic energy + Delta-G solvation = -30941.700027 eV Core-core repulsion = 26969.838801 eV Total energy + Delta-G solvation = -3971.861226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.20269 -40.97585 -39.87300 -37.55078 -37.08563 -35.66670 -34.95400 -33.05959 -32.30993 -30.68233 -29.00609 -28.44333 -26.11416 -25.34393 -24.23248 -24.10302 -23.47601 -22.59372 -21.98885 -20.67616 -19.90308 -19.34954 -18.59820 -17.50011 -17.21442 -17.04199 -16.93446 -16.80848 -16.20925 -16.01992 -15.59204 -15.47129 -15.25509 -15.00723 -14.98474 -14.71040 -14.26718 -14.17664 -13.97180 -13.81210 -13.60229 -13.21399 -13.12826 -13.03859 -12.93191 -12.67947 -12.60799 -12.28926 -12.18864 -11.87376 -11.73156 -11.66331 -11.60221 -11.44070 -11.32575 -11.11980 -10.98040 -10.78101 -10.64655 -10.21842 -9.74640 -9.04530 -8.64285 -5.45304 1.19436 1.38812 1.39969 1.48701 1.70987 1.77971 2.04378 2.55200 2.66884 3.14439 3.25721 3.30835 3.49522 3.56820 3.67230 3.68333 3.75084 3.78912 4.02954 4.08041 4.20289 4.28622 4.39429 4.40679 4.52879 4.54637 4.60237 4.61405 4.64418 4.65960 4.71252 4.75599 4.84673 4.85377 4.87697 4.92845 5.00879 5.02877 5.06380 5.08804 5.21311 5.30846 5.31939 5.37200 5.49049 5.56446 6.10544 6.24023 6.33889 6.83871 6.94318 7.03542 7.46318 8.11136 8.89175 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.003056 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.483479 B = 9159.731784 C = 9503.892662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.721 5.721 3 C 0.559 3.441 4 O -0.553 6.553 5 C -0.208 4.208 6 C 0.556 3.444 7 O -0.563 6.563 8 N -0.594 5.594 9 C 0.118 3.882 10 C -0.105 4.105 11 C -0.058 4.058 12 C -0.111 4.111 13 C 0.093 3.907 14 N -0.632 5.632 15 C -0.304 4.304 16 H 0.044 0.956 17 C -0.085 4.085 18 N -0.970 5.970 19 Si 1.113 2.887 20 H -0.317 1.317 21 H -0.285 1.285 22 H -0.248 1.248 23 C 0.142 3.858 24 C -0.107 4.107 25 C 0.108 3.892 26 C -0.114 4.114 27 C -0.124 4.124 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.054 0.946 31 H 0.413 0.587 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.036 0.964 39 H 0.025 0.975 40 H 0.246 0.754 41 H 0.031 0.969 42 H 0.030 0.970 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.112 0.888 48 H 0.124 0.876 49 H 0.121 0.879 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.450 -7.725 -24.907 31.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.372 5.372 3 C 0.344 3.656 4 O -0.432 6.432 5 C -0.215 4.215 6 C 0.344 3.656 7 O -0.442 6.442 8 N -0.326 5.326 9 C -0.004 4.004 10 C -0.143 4.143 11 C -0.059 4.059 12 C -0.148 4.148 13 C -0.031 4.031 14 N -0.360 5.360 15 C -0.433 4.433 16 H 0.062 0.938 17 C -0.277 4.277 18 N -0.615 5.615 19 Si 0.941 3.059 20 H -0.247 1.247 21 H -0.213 1.213 22 H -0.173 1.173 23 C 0.017 3.983 24 C -0.146 4.146 25 C -0.015 4.015 26 C -0.151 4.151 27 C -0.161 4.161 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.073 0.927 31 H 0.248 0.752 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.120 0.880 46 H 0.096 0.904 47 H 0.130 0.870 48 H 0.143 0.857 49 H 0.139 0.861 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.301 -7.914 -23.499 31.422 hybrid contribution 1.978 0.409 -0.699 2.137 sum -17.324 -7.505 -24.198 30.691 Atomic orbital electron populations 1.21757 0.77758 1.04362 1.02126 1.45809 1.08855 1.08470 1.74029 1.19123 0.86931 0.84022 0.75562 1.90719 1.69816 1.32322 1.50295 1.21353 0.92661 1.10082 0.97368 1.19386 0.79615 0.84177 0.82458 1.90697 1.48121 1.22718 1.82712 1.48126 1.49713 1.24344 1.10394 1.21650 0.94102 0.95778 0.88843 1.21525 0.97464 0.94881 1.00418 1.21010 0.95100 0.94910 0.94883 1.22654 0.96735 1.03415 0.92000 1.22257 0.88281 0.94498 0.98086 1.44921 1.20253 1.61493 1.09294 1.20078 0.94363 1.37521 0.91351 0.93825 1.27118 1.07104 1.00172 0.93291 1.70992 0.98799 1.53887 1.37851 0.83391 0.71323 0.78140 0.73026 1.24652 1.21281 1.17252 1.21732 0.96997 0.95826 0.83697 1.21669 0.98319 0.98395 0.96199 1.21991 0.94211 0.82364 1.02885 1.23195 1.02872 0.99165 0.89897 1.23224 1.02045 0.91214 0.99639 0.92012 0.87569 0.92699 0.75220 0.89659 0.89951 0.92097 0.92133 0.88884 0.89408 0.94615 0.95756 0.94547 0.95137 0.95144 0.88979 0.90749 0.87960 0.90405 0.87016 0.85739 0.86059 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.73 127.77 1.37 2.18 16 2 N -0.72 -9.72 5.71 -484.50 -2.77 -12.49 16 3 C 0.56 10.10 6.34 87.66 0.56 10.65 16 4 O -0.55 -12.85 15.62 -3.04 -0.05 -12.90 16 5 C -0.21 -3.54 1.14 -53.67 -0.06 -3.60 16 6 C 0.56 12.25 6.90 87.66 0.60 12.86 16 7 O -0.56 -15.56 16.27 -3.04 -0.05 -15.61 16 8 N -0.59 -12.73 2.96 -818.28 -2.42 -15.15 16 9 C 0.12 2.80 6.11 86.41 0.53 3.33 16 10 C -0.10 -2.94 4.87 30.42 0.15 -2.79 16 11 C -0.06 -1.62 0.55 -51.84 -0.03 -1.65 16 12 C -0.11 -3.15 4.92 31.57 0.16 -2.99 16 13 C 0.09 3.77 4.24 86.77 0.37 4.14 16 14 N -0.63 -30.29 3.34 -692.32 -2.31 -32.60 16 15 C -0.30 -17.94 10.59 84.04 0.89 -17.05 16 16 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 17 C -0.09 -5.18 5.50 84.86 0.47 -4.72 16 18 N -0.97 -64.02 13.70 21.65 0.30 -63.72 16 19 Si 1.11 54.73 24.51 68.60 1.68 56.41 16 20 H -0.32 -16.16 7.11 99.48 0.71 -15.46 16 21 H -0.28 -13.18 6.63 99.48 0.66 -12.52 16 22 H -0.25 -10.62 5.30 99.48 0.53 -10.09 16 23 C 0.14 5.39 6.16 86.63 0.53 5.93 16 24 C -0.11 -2.24 4.84 30.41 0.15 -2.10 16 25 C 0.11 2.06 5.79 86.41 0.50 2.56 16 26 C -0.11 -1.45 9.78 30.62 0.30 -1.15 16 27 C -0.12 -1.71 8.90 30.62 0.27 -1.43 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.68 8.11 -2.39 -0.02 0.66 16 31 H 0.41 4.67 8.83 -92.71 -0.82 3.85 16 32 H 0.09 2.18 7.01 -2.38 -0.02 2.16 16 33 H 0.08 1.80 6.56 -2.39 -0.02 1.78 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 2.04 7.82 -2.39 -0.02 2.03 16 36 H 0.09 2.22 6.18 -2.39 -0.01 2.21 16 37 H 0.09 2.20 7.98 -2.39 -0.02 2.18 16 38 H 0.04 1.53 6.25 -2.39 -0.01 1.52 16 39 H 0.03 1.06 3.96 -2.39 -0.01 1.05 16 40 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 41 H 0.03 1.13 8.00 -2.39 -0.02 1.12 16 42 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 43 H 0.09 1.76 8.10 -2.39 -0.02 1.74 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.10 1.92 4.26 -2.39 -0.01 1.91 16 46 H 0.08 1.43 7.63 -2.39 -0.02 1.41 16 47 H 0.11 1.52 8.11 -2.39 -0.02 1.50 16 48 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.12 1.58 7.95 -2.39 -0.02 1.56 16 50 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -78.08 378.92 1.00 -77.08 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -0.13 Total: 14.83 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 6.75 Total: 4.16 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -7.20 Total: -123.97 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.10 Total: -28.51 kcal Atomic # 14 Polarization: 54.73 SS G_CDS: 1.68 Total: 56.41 kcal Total: -78.08 1.00 -77.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319145155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.469 kcal (2) G-P(sol) polarization free energy of solvation -78.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds