Wall clock time and date at job start Tue Mar 31 2020 18:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00184 * 2 1 4 4 C 1.52996 * 109.47435 * 180.02562 * 3 2 1 5 5 O 1.42894 * 109.47267 * 64.99739 * 4 3 2 6 6 C 1.42903 * 114.00370 * 180.02562 * 5 4 3 7 7 C 1.52993 * 109.47504 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47309 * 61.29954 * 7 6 5 9 9 C 1.46961 * 110.99924 * 51.10486 * 8 7 6 10 10 C 1.53046 * 109.36614 * 183.16802 * 9 8 7 11 11 N 1.46962 * 109.38357 * 301.63393 * 10 9 8 12 12 C 1.38819 * 111.00202 * 183.17939 * 11 10 9 13 13 C 1.39793 * 119.58447 * 170.11834 * 12 11 10 14 14 C 1.38604 * 119.49032 * 179.97438 * 13 12 11 15 15 C 1.38385 * 118.67746 * 0.02562 * 14 13 12 16 16 C 1.40555 * 119.15357 * 359.97438 * 15 14 13 17 17 C 1.41313 * 119.78578 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00003 * 346.02477 * 17 16 15 19 19 C 1.40023 * 120.00254 * 166.02990 * 17 16 15 20 20 N 1.30739 * 120.00255 * 171.11784 * 19 17 16 21 21 Si 1.86805 * 119.99759 * 351.11348 * 19 17 16 22 22 H 1.48496 * 109.47032 * 87.26966 * 21 19 17 23 23 H 1.48505 * 109.46918 * 207.27245 * 21 19 17 24 24 H 1.48496 * 109.47179 * 327.26809 * 21 19 17 25 25 N 1.31959 * 119.58237 * 349.84247 * 12 11 10 26 26 C 1.46959 * 110.87826 * 59.30529 * 11 10 9 27 27 C 1.46962 * 111.00275 * 174.92894 * 8 7 6 28 28 H 1.08994 * 109.46909 * 59.99850 * 1 2 3 29 29 H 1.08997 * 109.47200 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46734 * 300.00245 * 1 2 3 31 31 H 1.09004 * 109.47576 * 59.99609 * 3 2 1 32 32 H 1.09011 * 109.47124 * 300.00208 * 3 2 1 33 33 H 1.09001 * 109.46851 * 304.99545 * 4 3 2 34 34 H 1.09004 * 109.47295 * 184.99875 * 4 3 2 35 35 H 1.09003 * 109.47055 * 59.99702 * 6 5 4 36 36 H 1.09007 * 109.46691 * 300.00196 * 6 5 4 37 37 H 1.09004 * 109.46924 * 301.30291 * 7 6 5 38 38 H 1.08993 * 109.47380 * 181.30405 * 7 6 5 39 39 H 1.09004 * 109.46793 * 63.21396 * 9 8 7 40 40 H 1.08998 * 109.50804 * 303.14599 * 9 8 7 41 41 H 1.09004 * 109.48929 * 181.65495 * 10 9 8 42 42 H 1.08999 * 109.48954 * 61.60578 * 10 9 8 43 43 H 1.07997 * 120.25911 * 359.97438 * 13 12 11 44 44 H 1.07993 * 120.66200 * 180.02562 * 14 13 12 45 45 H 1.08000 * 120.42195 * 179.97438 * 15 14 13 46 46 H 0.97002 * 119.99903 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.48188 * 60.65344 * 26 11 10 48 48 H 1.09000 * 109.48691 * 180.68971 * 26 11 10 49 49 H 1.08994 * 109.49056 * 56.84368 * 27 8 7 50 50 H 1.09003 * 109.48640 * 296.77920 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3812 0.4191 -1.3246 7 6 5.7246 -0.2340 -2.6648 8 7 5.2755 0.6337 -3.7617 9 6 5.7633 2.0080 -3.5797 10 6 5.2100 2.8952 -4.6973 11 7 5.6297 2.3581 -5.9993 12 6 5.2053 3.1781 -7.0359 13 6 5.6791 2.9536 -8.3317 14 6 5.2537 3.7732 -9.3654 15 6 4.3668 4.7963 -9.0796 16 6 3.9266 4.9712 -7.7563 17 6 3.0205 6.0113 -7.4496 18 1 2.8419 6.8004 -8.1650 19 6 2.3541 6.0189 -6.2181 20 7 1.6526 7.0627 -5.8608 21 14 2.4675 4.5376 -5.0856 22 1 3.6680 4.6662 -4.2211 23 1 1.2510 4.4694 -4.2366 24 1 2.5735 3.2997 -5.8989 25 7 4.3554 4.1563 -6.7866 26 6 5.1415 0.9840 -6.1810 27 6 5.6952 0.0967 -5.0637 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8465 0.8900 32 1 1.6886 1.8464 -0.8901 33 1 3.8514 0.5683 0.8410 34 1 3.9786 2.1765 0.0889 35 1 5.7351 -0.2134 -0.5104 36 1 5.8628 1.3950 -1.2623 37 1 5.2242 -1.1996 -2.7372 38 1 6.8029 -0.3775 -2.7333 39 1 6.8527 2.0146 -3.6158 40 1 5.4288 2.3881 -2.6144 41 1 5.5941 3.9086 -4.5810 42 1 4.1214 2.9105 -4.6442 43 1 6.3714 2.1477 -8.5261 44 1 5.6074 3.6165 -10.3737 45 1 4.0172 5.4519 -9.8634 46 1 1.1907 7.0677 -5.0078 47 1 4.0521 0.9774 -6.1446 48 1 5.4753 0.6042 -7.1466 49 1 5.3111 -0.9167 -5.1800 50 1 6.7838 0.0816 -5.1171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326456005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:41 Heat of formation + Delta-G solvation = -54.022237 kcal Electronic energy + Delta-G solvation = -30153.707852 eV Core-core repulsion = 26180.744632 eV Total energy + Delta-G solvation = -3972.963219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.40139 -39.93438 -39.20362 -38.16771 -36.57681 -35.40240 -33.17731 -32.46271 -31.94779 -31.25542 -29.74810 -27.71496 -27.17210 -26.67022 -25.02491 -23.51548 -23.32686 -23.01436 -22.20231 -20.87040 -19.64903 -18.64622 -17.98796 -17.76100 -17.13862 -16.80352 -16.53588 -16.49604 -16.42551 -16.30635 -16.09067 -15.83738 -15.58167 -15.27879 -15.09502 -14.67129 -14.38002 -14.29419 -14.22952 -13.69066 -13.52866 -13.19333 -12.99999 -12.82367 -12.78668 -12.67523 -12.60335 -12.46121 -12.31113 -12.22392 -12.01063 -11.92462 -11.81200 -11.55278 -11.37230 -10.68871 -10.57172 -10.48607 -10.26967 -9.68090 -9.24739 -9.05975 -8.89732 -6.73764 0.60927 0.82997 1.37871 1.47107 1.57364 2.32017 2.48075 2.68876 2.78806 2.82583 2.92513 3.55223 3.77734 3.86519 3.93443 4.06482 4.14893 4.17565 4.23064 4.28236 4.31992 4.35057 4.41545 4.43059 4.44946 4.45239 4.50816 4.57357 4.57627 4.68512 4.70605 4.74713 4.75792 4.78442 4.79643 4.81552 4.87099 4.94997 4.96836 5.05862 5.21068 5.45311 5.68612 5.73215 5.85107 5.99753 6.05355 6.08631 6.15985 6.25304 6.39767 6.57799 6.71235 7.62597 8.03543 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010795 B = 0.004052 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.122912 B = 6908.429358 C = 8802.221750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.057 3.943 4 C 0.059 3.941 5 O -0.393 6.393 6 C 0.056 3.944 7 C 0.062 3.938 8 N -0.554 5.554 9 C 0.067 3.933 10 C 0.061 3.939 11 N -0.477 5.477 12 C 0.320 3.680 13 C -0.286 4.286 14 C -0.028 4.028 15 C -0.289 4.289 16 C 0.247 3.753 17 C -0.453 4.453 18 H 0.075 0.925 19 C 0.052 3.948 20 N -0.835 5.835 21 Si 1.056 2.944 22 H -0.265 1.265 23 H -0.334 1.334 24 H -0.293 1.293 25 N -0.611 5.611 26 C 0.064 3.936 27 C 0.069 3.931 28 H 0.035 0.965 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.029 0.971 43 H 0.140 0.860 44 H 0.151 0.849 45 H 0.115 0.885 46 H 0.294 0.706 47 H 0.017 0.983 48 H 0.103 0.897 49 H 0.103 0.897 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.632 -16.352 12.292 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.020 4.020 4 C -0.018 4.018 5 O -0.313 6.313 6 C -0.021 4.021 7 C -0.065 4.065 8 N -0.280 5.280 9 C -0.061 4.061 10 C -0.067 4.067 11 N -0.197 5.197 12 C 0.086 3.914 13 C -0.310 4.310 14 C -0.052 4.052 15 C -0.311 4.311 16 C 0.122 3.878 17 C -0.485 4.485 18 H 0.093 0.907 19 C -0.166 4.166 20 N -0.461 5.461 21 Si 0.893 3.107 22 H -0.192 1.192 23 H -0.268 1.268 24 H -0.222 1.222 25 N -0.335 5.335 26 C -0.062 4.062 27 C -0.059 4.059 28 H 0.053 0.947 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.157 0.843 44 H 0.169 0.831 45 H 0.133 0.867 46 H 0.105 0.895 47 H 0.035 0.965 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.182 -16.255 13.093 21.768 hybrid contribution -0.243 0.628 -0.427 0.798 sum 5.938 -15.626 12.665 20.973 Atomic orbital electron populations 1.22901 0.79902 1.03774 1.00508 1.87883 1.21083 1.28251 1.95534 1.22696 0.92992 0.85080 1.01188 1.22636 0.93142 0.98342 0.87655 1.88076 1.22675 1.82139 1.38417 1.22768 0.81663 1.00154 0.97491 1.22185 0.99208 0.96616 0.88467 1.62071 1.61016 1.01974 1.02936 1.22138 0.97808 0.88718 0.97401 1.22380 0.98378 0.97758 0.88156 1.59747 1.55679 1.03036 1.01206 1.20018 0.89168 0.91005 0.91162 1.21099 1.11000 1.07599 0.91307 1.21325 0.92669 0.91861 0.99338 1.21771 1.08237 1.04872 0.96220 1.18525 0.90760 0.89515 0.89010 1.19495 1.20274 1.07176 1.01560 0.90680 1.26885 0.91126 0.99515 0.99042 1.69640 1.24037 1.29913 1.22508 0.84097 0.73805 0.77260 0.75532 1.19154 1.26828 1.22232 1.66663 1.18143 1.12502 1.36195 1.22324 0.97042 0.85866 1.00989 1.22156 0.99014 0.97940 0.86804 0.94671 0.88411 0.92421 0.89378 0.94348 0.91282 0.90746 0.90668 0.92829 0.89479 0.91039 0.92910 0.89712 0.92115 0.95232 0.84252 0.83132 0.86657 0.89530 0.96482 0.87850 0.87839 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.41 -10.29 10.67 -144.34 -1.54 -11.83 16 3 C 0.06 1.27 6.32 71.98 0.45 1.73 16 4 C 0.06 1.22 6.32 71.98 0.45 1.67 16 5 O -0.39 -10.43 10.20 -144.34 -1.47 -11.90 16 6 C 0.06 1.09 5.49 71.98 0.40 1.48 16 7 C 0.06 1.23 5.56 86.30 0.48 1.71 16 8 N -0.55 -15.11 4.71 -895.74 -4.22 -19.34 16 9 C 0.07 2.01 5.09 86.31 0.44 2.45 16 10 C 0.06 2.44 3.61 86.31 0.31 2.75 16 11 N -0.48 -18.38 4.70 -701.27 -3.30 -21.68 16 12 C 0.32 14.34 6.20 133.42 0.83 15.17 16 13 C -0.29 -11.21 9.32 22.73 0.21 -11.00 16 14 C -0.03 -1.08 10.15 22.39 0.23 -0.85 16 15 C -0.29 -13.48 9.83 22.87 0.22 -13.25 16 16 C 0.25 13.36 6.24 40.18 0.25 13.61 16 17 C -0.45 -26.44 9.69 23.46 0.23 -26.21 16 18 H 0.08 4.52 8.06 -2.91 -0.02 4.49 16 19 C 0.05 3.00 5.52 85.29 0.47 3.47 16 20 N -0.84 -47.66 13.92 21.84 0.30 -47.36 16 21 Si 1.06 54.55 22.38 68.60 1.54 56.09 16 22 H -0.27 -13.18 5.44 99.48 0.54 -12.64 16 23 H -0.33 -16.79 7.11 99.48 0.71 -16.08 16 24 H -0.29 -16.19 6.20 99.48 0.62 -15.58 16 25 N -0.61 -31.79 3.86 -186.59 -0.72 -32.51 16 26 C 0.06 2.06 5.45 86.31 0.47 2.53 16 27 C 0.07 1.68 5.61 86.31 0.48 2.16 16 28 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 36 H 0.05 1.00 6.16 -2.38 -0.01 0.99 16 37 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 2.43 5.97 -2.39 -0.01 2.41 16 41 H 0.06 2.65 7.55 -2.38 -0.02 2.64 16 42 H 0.03 1.36 3.87 -2.39 -0.01 1.35 16 43 H 0.14 4.50 7.75 -2.91 -0.02 4.48 16 44 H 0.15 4.49 8.06 -2.91 -0.02 4.46 16 45 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 46 H 0.29 15.30 8.29 -92.71 -0.77 14.53 16 47 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.10 2.88 7.33 -2.39 -0.02 2.86 16 49 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -71.84 385.68 -1.57 -73.41 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.66 Total: 15.96 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 7.18 Total: -0.86 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -7.93 Total: -120.88 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -3.01 Total: -23.73 kcal Atomic # 14 Polarization: 54.55 SS G_CDS: 1.54 Total: 56.09 kcal Total: -71.84 -1.57 -73.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326456005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.392 kcal (2) G-P(sol) polarization free energy of solvation -71.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds