Wall clock time and date at job start Tue Mar 31 2020 18:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 120.00034 * 2 1 4 4 O 1.21281 * 119.99801 * 5.05113 * 3 2 1 5 5 C 1.50702 * 120.00090 * 185.05060 * 3 2 1 6 6 C 1.50698 * 112.85088 * 300.39506 * 5 3 2 7 7 O 1.21279 * 120.00009 * 114.13594 * 6 5 3 8 8 N 1.34775 * 119.99855 * 294.14292 * 6 5 3 9 9 C 1.47676 * 134.45144 * 185.03203 * 8 6 5 10 10 C 1.53465 * 85.96488 * 155.73476 * 9 8 6 11 11 C 1.47681 * 134.45681 * 5.05823 * 8 6 5 12 12 C 1.52638 * 113.67014 * 137.89246 * 10 9 8 13 13 C 1.53189 * 109.34070 * 73.99728 * 12 10 9 14 14 C 1.53146 * 109.35052 * 59.06841 * 13 12 10 15 15 N 1.46894 * 109.10136 * 303.55688 * 14 13 12 16 16 C 1.36932 * 120.68443 * 235.31022 * 15 14 13 17 17 H 1.07994 * 120.00419 * 29.34986 * 16 15 14 18 18 C 1.38818 * 119.99675 * 209.35529 * 16 15 14 19 19 N 1.31616 * 120.00053 * 11.54012 * 18 16 15 20 20 Si 1.86805 * 119.99804 * 191.53521 * 18 16 15 21 21 H 1.48494 * 109.46914 * 60.00168 * 20 18 16 22 22 H 1.48500 * 109.47049 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47019 * 299.99833 * 20 18 16 24 24 C 1.47118 * 118.62798 * 55.32405 * 15 14 13 25 25 C 1.53782 * 113.61329 * 71.59272 * 5 3 2 26 26 C 1.53957 * 87.01762 * 89.22764 * 25 5 3 27 27 C 1.53781 * 113.61351 * 169.20142 * 5 3 2 28 28 H 1.08996 * 109.47355 * 59.99787 * 1 2 3 29 29 H 1.09008 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47325 * 299.99647 * 1 2 3 31 31 H 0.97007 * 119.99755 * 180.02562 * 2 1 3 32 32 H 1.08999 * 113.79527 * 41.47585 * 9 8 6 33 33 H 1.08997 * 113.79400 * 270.00158 * 9 8 6 34 34 H 1.08994 * 113.79173 * 90.00314 * 11 8 6 35 35 H 1.09003 * 113.79139 * 318.53083 * 11 8 6 36 36 H 1.08999 * 109.49265 * 193.95827 * 12 10 9 37 37 H 1.09005 * 109.49018 * 314.04076 * 12 10 9 38 38 H 1.08995 * 109.49077 * 179.03639 * 13 12 10 39 39 H 1.09008 * 109.48974 * 299.08553 * 13 12 10 40 40 H 1.09000 * 109.52821 * 63.43952 * 14 13 12 41 41 H 1.08995 * 109.53249 * 183.58826 * 14 13 12 42 42 H 0.96998 * 120.00045 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.63704 * 188.93092 * 24 15 14 44 44 H 1.09007 * 109.63488 * 68.31105 * 24 15 14 45 45 H 1.08993 * 113.61318 * 203.74582 * 25 5 3 46 46 H 1.09000 * 113.61453 * 334.65244 * 25 5 3 47 47 H 1.09001 * 113.53894 * 270.81015 * 26 25 5 48 48 H 1.09004 * 113.66341 * 139.92912 * 26 25 5 49 49 H 1.09004 * 113.61529 * 25.34769 * 27 5 3 50 50 H 1.08990 * 113.61751 * 156.16872 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2154 0.0925 5 6 3.6415 1.1697 -0.1149 6 6 4.3152 0.4160 1.0027 7 8 4.9317 -0.6006 0.7633 8 7 4.2324 0.8716 2.2685 9 6 4.8251 0.4595 3.5568 10 6 4.6030 1.9120 3.9997 11 6 3.5123 1.9826 2.9228 12 6 4.0695 2.0436 5.4237 13 6 5.1958 1.7424 6.4174 14 6 6.3502 2.7223 6.1883 15 7 6.7905 2.6279 4.7900 16 6 8.0990 2.3625 4.4859 17 1 8.7024 1.7757 5.1625 18 6 8.6499 2.8479 3.3078 19 7 7.9985 3.7437 2.5968 20 14 10.3159 2.2298 2.7316 21 1 10.2527 0.7614 2.5198 22 1 10.6783 2.8992 1.4566 23 1 11.3411 2.5379 3.7608 24 6 5.7967 2.8248 3.7233 25 6 4.1530 0.7851 -1.5132 26 6 4.0723 2.2815 -1.8663 27 6 4.2379 2.5651 -0.3639 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 5.8754 0.1767 3.4872 33 1 4.2234 -0.2646 4.1060 34 1 2.5201 1.7116 3.2834 35 1 3.5199 2.9097 2.3495 36 1 3.7054 3.0585 5.5834 37 1 3.2537 1.3363 5.5733 38 1 4.8219 1.8524 7.4352 39 1 5.5493 0.7221 6.2680 40 1 6.0129 3.7377 6.3964 41 1 7.1787 2.4706 6.8503 42 1 8.3833 4.0827 1.7735 43 1 6.2380 2.5693 2.7599 44 1 5.4689 3.8643 3.7154 45 1 5.1691 0.3907 -1.5132 46 1 3.4569 0.1643 -2.0773 47 1 3.1031 2.5833 -2.2634 48 1 4.9074 2.6338 -2.4717 49 1 3.6102 3.3793 -0.0015 50 1 5.2767 2.6587 -0.0478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330511537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:39 Heat of formation + Delta-G solvation = -12.169216 kcal Electronic energy + Delta-G solvation = -31668.004170 eV Core-core repulsion = 27696.855834 eV Total energy + Delta-G solvation = -3971.148336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.47864 -41.23775 -39.54982 -38.09174 -37.33442 -35.70326 -34.72396 -32.20260 -31.45029 -29.57928 -27.97810 -27.34589 -27.12045 -26.57723 -26.10632 -23.95079 -22.74052 -22.34175 -21.17492 -20.31220 -19.46239 -18.77075 -18.46015 -17.43975 -17.36669 -17.07400 -16.73674 -16.59474 -16.13841 -15.77100 -15.74323 -15.26729 -15.09642 -14.93394 -14.57302 -14.48025 -14.11139 -13.90697 -13.72549 -13.61750 -13.49459 -13.27866 -13.13006 -13.01379 -12.94173 -12.76712 -12.60666 -12.47313 -12.30038 -12.07157 -12.00016 -11.76465 -11.55840 -11.47816 -11.30129 -11.07175 -11.05984 -10.61781 -10.52250 -10.23884 -9.73749 -8.63037 -7.87218 -5.33745 1.23821 1.40621 1.41147 1.44415 1.48854 1.76049 2.06369 2.47781 3.16507 3.24324 3.29662 3.38969 3.45326 3.58420 3.70095 3.82241 4.00245 4.05496 4.21862 4.31699 4.34321 4.39909 4.44804 4.48910 4.57964 4.58548 4.60920 4.68844 4.75104 4.77195 4.86488 4.88938 4.90927 4.93630 4.94435 5.03347 5.07911 5.17474 5.27896 5.29337 5.30004 5.33529 5.46804 5.59497 5.66928 5.77575 6.28818 6.40702 6.62625 6.95224 7.00193 7.16452 7.88111 8.38679 9.17876 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012241 B = 0.004722 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.776770 B = 5927.770653 C = 7274.903120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.722 5.722 3 C 0.553 3.447 4 O -0.549 6.549 5 C -0.131 4.131 6 C 0.548 3.452 7 O -0.575 6.575 8 N -0.632 5.632 9 C 0.127 3.873 10 C -0.104 4.104 11 C 0.120 3.880 12 C -0.089 4.089 13 C -0.123 4.123 14 C 0.137 3.863 15 N -0.608 5.608 16 C -0.258 4.258 17 H 0.063 0.937 18 C -0.043 4.043 19 N -0.929 5.929 20 Si 0.953 3.047 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.272 1.272 24 C 0.211 3.789 25 C -0.096 4.096 26 C -0.126 4.126 27 C -0.111 4.111 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.411 0.589 32 H 0.048 0.952 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.016 0.984 41 H 0.049 0.951 42 H 0.247 0.753 43 H 0.054 0.946 44 H -0.003 1.003 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.091 -7.262 -3.081 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.373 5.373 3 C 0.337 3.663 4 O -0.426 6.426 5 C -0.138 4.138 6 C 0.337 3.663 7 O -0.455 6.455 8 N -0.364 5.364 9 C 0.005 3.995 10 C -0.106 4.106 11 C -0.003 4.003 12 C -0.127 4.127 13 C -0.162 4.162 14 C 0.012 3.988 15 N -0.331 5.331 16 C -0.389 4.389 17 H 0.081 0.919 18 C -0.238 4.238 19 N -0.575 5.575 20 Si 0.782 3.218 21 H -0.213 1.213 22 H -0.220 1.220 23 H -0.197 1.197 24 C 0.085 3.915 25 C -0.134 4.134 26 C -0.163 4.163 27 C -0.149 4.149 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.074 0.926 31 H 0.246 0.754 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.015 0.985 45 H 0.106 0.894 46 H 0.116 0.884 47 H 0.113 0.887 48 H 0.108 0.892 49 H 0.100 0.900 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.150 -7.040 -3.472 18.861 hybrid contribution 1.743 -0.332 -0.409 1.821 sum -15.407 -7.372 -3.882 17.515 Atomic orbital electron populations 1.21773 0.77284 1.04528 1.02170 1.45776 1.09074 1.08055 1.74371 1.19302 0.87128 0.84261 0.75619 1.90688 1.69633 1.32298 1.50001 1.22360 0.93849 1.00851 0.96702 1.19926 0.80414 0.83605 0.82330 1.90659 1.45414 1.26194 1.83271 1.50035 1.47775 1.32897 1.05738 1.23165 0.98231 0.97446 0.80676 1.22700 0.96281 0.95353 0.96287 1.23369 0.96533 0.89243 0.91127 1.21317 0.97638 1.02578 0.91171 1.21901 0.95716 0.99229 0.99349 1.21090 0.96074 0.96318 0.85313 1.44232 1.04671 1.83143 1.01022 1.19399 0.88475 1.25578 1.05416 0.91905 1.25688 1.00619 0.97350 1.00188 1.70099 1.39815 1.31105 1.16508 0.85553 0.81251 0.77549 0.77416 1.21323 1.22027 1.19746 1.20181 0.86124 0.92630 0.92520 1.22830 1.02584 0.98038 0.89965 1.22864 1.03672 0.94913 0.94882 1.22730 1.00318 0.93456 0.98408 0.92027 0.87201 0.92582 0.75432 0.93365 0.87641 0.87179 0.90971 0.91315 0.89353 0.89461 0.92793 0.96624 0.93244 0.94344 0.92750 0.98546 0.89439 0.88408 0.88658 0.89244 0.89977 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 10.71 127.77 1.37 2.56 16 2 N -0.72 -14.33 5.67 -484.52 -2.75 -17.08 16 3 C 0.55 14.80 6.19 87.66 0.54 15.34 16 4 O -0.55 -17.26 15.90 -3.03 -0.05 -17.31 16 5 C -0.13 -3.91 0.82 -53.15 -0.04 -3.95 16 6 C 0.55 19.77 6.84 87.66 0.60 20.37 16 7 O -0.57 -24.05 16.89 -3.03 -0.05 -24.10 16 8 N -0.63 -22.09 3.47 -843.23 -2.92 -25.01 16 9 C 0.13 4.45 7.63 86.30 0.66 5.11 16 10 C -0.10 -3.57 0.87 -52.04 -0.05 -3.62 16 11 C 0.12 3.68 7.47 86.29 0.64 4.32 16 12 C -0.09 -2.42 5.07 30.54 0.15 -2.26 16 13 C -0.12 -3.61 6.01 30.71 0.18 -3.43 16 14 C 0.14 5.39 6.45 86.35 0.56 5.95 16 15 N -0.61 -29.80 3.00 -699.55 -2.10 -31.90 16 16 C -0.26 -14.24 9.60 84.04 0.81 -13.43 16 17 H 0.06 3.40 7.85 -2.91 -0.02 3.38 16 18 C -0.04 -2.42 5.04 84.86 0.43 -1.99 16 19 N -0.93 -55.13 11.00 21.65 0.24 -54.89 16 20 Si 0.95 46.39 29.57 68.60 2.03 48.42 16 21 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 22 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 24 C 0.21 9.89 4.30 86.19 0.37 10.27 16 25 C -0.10 -2.47 6.90 31.18 0.22 -2.25 16 26 C -0.13 -3.10 7.81 31.18 0.24 -2.86 16 27 C -0.11 -3.51 6.74 31.12 0.21 -3.30 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.41 7.38 8.75 -92.70 -0.81 6.57 16 32 H 0.05 2.10 8.09 -2.39 -0.02 2.08 16 33 H 0.11 2.99 8.07 -2.39 -0.02 2.97 16 34 H 0.11 2.70 8.09 -2.39 -0.02 2.68 16 35 H 0.07 2.41 7.77 -2.39 -0.02 2.39 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 1.82 8.12 -2.38 -0.02 1.80 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 39 H 0.05 1.65 7.93 -2.38 -0.02 1.63 16 40 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 41 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.05 2.99 5.98 -2.39 -0.01 2.98 16 44 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 45 H 0.09 2.54 7.72 -2.39 -0.02 2.52 16 46 H 0.10 1.99 8.09 -2.39 -0.02 1.97 16 47 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.08 2.68 7.34 -2.39 -0.02 2.66 16 50 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 Total: -1.00 -72.71 396.71 1.41 -71.30 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.12 Total: 23.74 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 6.90 Total: 26.83 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -7.53 Total: -128.89 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.10 Total: -41.41 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -72.71 1.41 -71.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330511537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.132 kcal (2) G-P(sol) polarization free energy of solvation -72.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds