Wall clock time and date at job start Tue Mar 31 2020 18:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46894 * 111.00292 * 2 1 4 4 C 1.46905 * 110.99808 * 123.95007 * 2 1 3 5 5 H 1.08997 * 109.47035 * 300.00291 * 4 2 1 6 6 C 1.50700 * 109.47232 * 179.97438 * 4 2 1 7 7 O 1.21283 * 119.99803 * 340.00099 * 6 4 2 8 8 N 1.34777 * 119.99675 * 160.27974 * 6 4 2 9 9 C 1.46496 * 120.00345 * 359.72090 * 8 6 4 10 10 C 1.46497 * 119.99525 * 179.72583 * 8 6 4 11 11 C 1.53009 * 109.47238 * 90.00006 * 10 8 6 12 12 H 1.08993 * 109.47081 * 59.99692 * 11 10 8 13 13 O 1.42904 * 109.46767 * 299.99455 * 11 10 8 14 14 C 1.52998 * 109.46920 * 179.97438 * 11 10 8 15 15 N 1.46499 * 109.46877 * 184.99533 * 14 11 10 16 16 C 1.36938 * 120.00219 * 179.97438 * 15 14 11 17 17 H 1.07997 * 119.99918 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00223 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99765 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00283 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46931 * 90.00041 * 20 18 16 22 22 H 1.48491 * 109.47229 * 210.00348 * 20 18 16 23 23 H 1.48506 * 109.46910 * 330.00373 * 20 18 16 24 24 C 1.50705 * 109.46717 * 60.00145 * 4 2 1 25 25 C 1.38231 * 120.00167 * 39.72449 * 24 4 2 26 26 C 1.38240 * 119.99775 * 179.78487 * 25 24 4 27 27 C 1.38233 * 119.99918 * 0.45035 * 26 25 24 28 28 C 1.38233 * 120.00297 * 359.80080 * 27 26 25 29 29 C 1.38234 * 119.99769 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47598 * 300.00541 * 1 2 3 31 31 H 1.09008 * 109.47084 * 59.99897 * 1 2 3 32 32 H 1.08991 * 109.47574 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47655 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47012 * 299.99631 * 3 2 1 35 35 H 1.09000 * 109.47494 * 59.99562 * 3 2 1 36 36 H 1.08997 * 109.47115 * 90.00316 * 9 8 6 37 37 H 1.08995 * 109.47364 * 210.00706 * 9 8 6 38 38 H 1.09002 * 109.47090 * 330.00257 * 9 8 6 39 39 H 1.09000 * 109.46889 * 209.99487 * 10 8 6 40 40 H 1.09001 * 109.47460 * 330.00097 * 10 8 6 41 41 H 0.96701 * 113.99803 * 300.00100 * 13 11 10 42 42 H 1.08994 * 109.47457 * 304.99409 * 14 11 10 43 43 H 1.09004 * 109.47090 * 65.00272 * 14 11 10 44 44 H 0.97004 * 119.99744 * 0.02562 * 15 14 11 45 45 H 0.97002 * 119.99389 * 180.02562 * 19 18 16 46 46 H 1.07993 * 120.00137 * 0.02562 * 25 24 4 47 47 H 1.07999 * 119.99791 * 180.27262 * 26 25 24 48 48 H 1.07998 * 119.99941 * 179.83387 * 27 26 25 49 49 H 1.07996 * 120.00293 * 179.97438 * 28 27 26 50 50 H 1.08005 * 120.00174 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.6458 -0.3200 2.0688 6 6 3.5018 -0.7441 1.1040 7 8 4.0816 -0.4824 0.0714 8 7 4.2048 -1.0208 2.2202 9 6 3.5046 -1.3369 3.4675 10 6 5.6693 -1.0054 2.1859 11 6 6.1727 0.3991 2.5251 12 1 5.8296 0.6773 3.5215 13 8 5.6641 1.3312 1.5686 14 6 7.7022 0.4150 2.4899 15 7 8.1872 1.7255 2.9300 16 6 9.5325 1.9758 2.9813 17 1 10.2360 1.2073 2.6970 18 6 9.9920 3.2173 3.3988 19 7 9.1346 4.1538 3.7458 20 14 11.8272 3.5591 3.4682 21 1 12.2782 4.1075 2.1639 22 1 12.1068 4.5448 4.5430 23 1 12.5554 2.2965 3.7528 24 6 1.5121 -2.1907 1.0506 25 6 1.4547 -2.8275 -0.1750 26 6 1.0156 -4.1359 -0.2542 27 6 0.6251 -4.8044 0.8909 28 6 0.6776 -4.1660 2.1159 29 6 1.1211 -2.8592 2.1957 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0275 -0.0005 33 1 3.0851 1.3423 0.0005 34 1 1.6460 1.8947 -0.8900 35 1 1.6459 1.8948 0.8899 36 1 3.3355 -2.4120 3.5268 37 1 4.1102 -1.0170 4.3153 38 1 2.5469 -0.8168 3.4883 39 1 6.0573 -1.7163 2.9155 40 1 6.0125 -1.2835 1.1894 41 1 5.9303 1.1448 0.6578 42 1 8.0890 -0.3574 3.1546 43 1 8.0443 0.2239 1.4727 44 1 7.5553 2.4156 3.1857 45 1 9.4558 5.0215 4.0371 46 1 1.7566 -2.3041 -1.0701 47 1 0.9750 -4.6348 -1.2112 48 1 0.2796 -5.8257 0.8287 49 1 0.3721 -4.6881 3.0105 50 1 1.1617 -2.3601 3.1527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332608896.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:19 Heat of formation + Delta-G solvation = -20.419918 kcal Electronic energy + Delta-G solvation = -30062.206352 eV Core-core repulsion = 26090.700238 eV Total energy + Delta-G solvation = -3971.506114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.83703 -39.10177 -37.57913 -36.52212 -35.28565 -33.96783 -32.20539 -31.26678 -31.14371 -29.57844 -27.99412 -27.34878 -26.89539 -25.15529 -23.24318 -22.77275 -22.51414 -21.48897 -21.00523 -19.11068 -17.58812 -17.20812 -17.11058 -16.56772 -16.13901 -15.76952 -15.50215 -15.09498 -14.82781 -14.57116 -14.45379 -14.39042 -14.22404 -13.67963 -13.64904 -13.22186 -13.06856 -12.93532 -12.89112 -12.64479 -12.51855 -12.38224 -12.32494 -12.10816 -11.99614 -11.59050 -11.46105 -11.22176 -11.18135 -10.91817 -10.79679 -10.62474 -10.14045 -9.93285 -9.75134 -9.58549 -9.16088 -8.89767 -8.87045 -8.52190 -8.46839 -6.89315 -5.72658 -3.01846 1.00749 1.16089 2.63164 2.83729 3.45553 3.47379 3.50139 3.52045 3.79421 4.37443 4.43610 4.59629 4.59999 4.74479 4.80987 4.88685 4.89121 4.98200 5.04954 5.09275 5.19524 5.22603 5.26252 5.35684 5.38274 5.49294 5.51211 5.54192 5.56941 5.65873 5.67641 5.70170 5.77341 5.81850 6.03230 6.10790 6.16881 6.26847 6.27764 6.30893 6.45938 6.55865 6.69055 6.74303 6.78570 6.83807 7.34667 7.71228 8.18651 8.24721 8.45795 9.56978 10.15165 10.50825 11.49833 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021340 B = 0.002484 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.804662 B =11268.928351 C =11903.739620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.520 5.520 3 C 0.015 3.985 4 C 0.109 3.891 5 H 0.068 0.932 6 C 0.531 3.469 7 O -0.512 6.512 8 N -0.606 5.606 9 C 0.073 3.927 10 C 0.086 3.914 11 C 0.088 3.912 12 H 0.094 0.906 13 O -0.549 6.549 14 C 0.126 3.874 15 N -0.725 5.725 16 C -0.241 4.241 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.080 4.080 25 C -0.082 4.082 26 C -0.125 4.125 27 C -0.117 4.117 28 C -0.123 4.123 29 C -0.114 4.114 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.022 0.978 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.374 0.626 42 H 0.024 0.976 43 H 0.021 0.979 44 H 0.388 0.612 45 H 0.255 0.745 46 H 0.135 0.865 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.962 -17.655 -3.749 29.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.244 5.244 3 C -0.133 4.133 4 C -0.003 4.003 5 H 0.085 0.915 6 C 0.318 3.682 7 O -0.387 6.387 8 N -0.339 5.339 9 C -0.071 4.071 10 C -0.038 4.038 11 C 0.027 3.973 12 H 0.112 0.888 13 O -0.354 6.354 14 C -0.003 4.003 15 N -0.370 5.370 16 C -0.372 4.372 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.081 4.081 25 C -0.100 4.100 26 C -0.143 4.143 27 C -0.135 4.135 28 C -0.141 4.141 29 C -0.132 4.132 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.222 0.778 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.222 0.778 45 H 0.065 0.935 46 H 0.153 0.847 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.570 -17.478 -4.212 28.855 hybrid contribution 0.776 0.567 0.657 1.164 sum -21.794 -16.911 -3.555 27.814 Atomic orbital electron populations 1.22451 0.86837 1.02320 1.00862 1.61719 1.07538 1.14688 1.40499 1.22612 1.03420 0.86899 1.00332 1.20502 0.92806 0.92630 0.94370 0.91463 1.19973 0.88414 0.76516 0.83307 1.90652 1.70853 1.46653 1.30496 1.47635 1.06630 1.69736 1.09919 1.22006 0.97751 1.00596 0.86711 1.22264 0.78852 0.98732 1.03916 1.22468 0.93959 0.87463 0.93440 0.88791 1.86524 1.75995 1.53197 1.19652 1.21235 0.90995 0.90497 0.97525 1.42249 1.04845 1.10194 1.79704 1.19222 0.83406 0.97224 1.37387 0.91283 1.24760 0.97643 0.96359 1.02228 1.69687 1.32519 1.04636 1.51064 0.86183 0.85120 0.77579 0.77257 1.21694 1.21771 1.20791 1.19394 1.00640 0.93893 0.94133 1.21154 0.96812 0.94085 0.97966 1.21218 0.99657 0.94811 0.98595 1.21194 0.99687 0.99839 0.92816 1.21065 1.00440 0.94778 0.97835 1.21096 0.99273 0.95192 0.97672 0.95661 0.90897 0.91115 0.88734 0.91097 0.95926 0.92263 0.90569 0.91367 0.89670 0.89422 0.77832 0.95833 0.96095 0.77778 0.93533 0.84732 0.85983 0.86189 0.85974 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.26 60.06 0.56 0.77 16 2 N -0.52 -5.96 3.93 -246.00 -0.97 -6.93 16 3 C 0.01 0.18 9.19 60.06 0.55 0.73 16 4 C 0.11 1.21 1.40 -70.01 -0.10 1.11 16 5 H 0.07 0.69 6.18 -51.93 -0.32 0.37 16 6 C 0.53 7.23 5.55 -10.98 -0.06 7.16 16 7 O -0.51 -8.48 13.08 -3.18 -0.04 -8.52 16 8 N -0.61 -7.40 2.83 -181.57 -0.51 -7.91 16 9 C 0.07 0.64 8.87 59.84 0.53 1.17 16 10 C 0.09 1.14 5.15 -4.04 -0.02 1.12 16 11 C 0.09 1.47 3.27 -26.73 -0.09 1.38 16 12 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 13 O -0.55 -10.24 12.09 -43.97 -0.53 -10.77 16 14 C 0.13 2.56 5.90 -4.04 -0.02 2.53 16 15 N -0.73 -19.03 5.55 -59.91 -0.33 -19.36 16 16 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.99 13.06 55.49 0.72 -28.27 16 20 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C -0.08 -0.79 3.60 -104.62 -0.38 -1.17 16 25 C -0.08 -0.84 8.41 -39.58 -0.33 -1.17 16 26 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 27 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 28 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 29 C -0.11 -0.92 8.18 -39.58 -0.32 -1.25 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.07 0.61 6.36 -51.93 -0.33 0.28 16 33 H 0.09 1.43 5.68 -51.93 -0.30 1.13 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.44 7.16 -51.93 -0.37 0.07 16 37 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 38 H 0.07 0.52 5.20 -51.93 -0.27 0.25 16 39 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 40 H 0.09 1.25 7.42 -51.93 -0.39 0.86 16 41 H 0.37 6.66 8.45 45.56 0.38 7.04 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.39 10.95 7.67 -40.82 -0.31 10.64 16 45 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.13 1.54 7.71 -52.49 -0.40 1.13 16 47 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 49 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 50 H 0.12 0.77 6.42 -52.48 -0.34 0.44 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -34.36 397.52 -9.07 -43.43 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -7.26 Total: 13.77 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.13 Total: 0.75 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -1.09 Total: -62.47 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.57 Total: -19.29 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.36 -9.07 -43.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332608896.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.012 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds