Wall clock time and date at job start Tue Mar 31 2020 18:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46894 * 111.00292 * 2 1 4 4 C 1.46905 * 110.99808 * 123.95007 * 2 1 3 5 5 H 1.08997 * 109.47035 * 300.00291 * 4 2 1 6 6 C 1.50700 * 109.47232 * 179.97438 * 4 2 1 7 7 O 1.21283 * 119.99803 * 340.00099 * 6 4 2 8 8 N 1.34777 * 119.99675 * 160.27974 * 6 4 2 9 9 C 1.46496 * 120.00345 * 359.72090 * 8 6 4 10 10 C 1.46497 * 119.99525 * 179.72583 * 8 6 4 11 11 C 1.53009 * 109.47238 * 90.00006 * 10 8 6 12 12 H 1.08993 * 109.47081 * 59.99692 * 11 10 8 13 13 O 1.42904 * 109.46767 * 299.99455 * 11 10 8 14 14 C 1.52998 * 109.46920 * 179.97438 * 11 10 8 15 15 N 1.46499 * 109.46877 * 184.99533 * 14 11 10 16 16 C 1.36938 * 120.00219 * 179.97438 * 15 14 11 17 17 H 1.07997 * 119.99918 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00223 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99765 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00283 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46931 * 90.00041 * 20 18 16 22 22 H 1.48491 * 109.47229 * 210.00348 * 20 18 16 23 23 H 1.48506 * 109.46910 * 330.00373 * 20 18 16 24 24 C 1.50705 * 109.46717 * 60.00145 * 4 2 1 25 25 C 1.38231 * 120.00167 * 39.72449 * 24 4 2 26 26 C 1.38240 * 119.99775 * 179.78487 * 25 24 4 27 27 C 1.38233 * 119.99918 * 0.45035 * 26 25 24 28 28 C 1.38233 * 120.00297 * 359.80080 * 27 26 25 29 29 C 1.38234 * 119.99769 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47598 * 300.00541 * 1 2 3 31 31 H 1.09008 * 109.47084 * 59.99897 * 1 2 3 32 32 H 1.08991 * 109.47574 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47655 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47012 * 299.99631 * 3 2 1 35 35 H 1.09000 * 109.47494 * 59.99562 * 3 2 1 36 36 H 1.08997 * 109.47115 * 90.00316 * 9 8 6 37 37 H 1.08995 * 109.47364 * 210.00706 * 9 8 6 38 38 H 1.09002 * 109.47090 * 330.00257 * 9 8 6 39 39 H 1.09000 * 109.46889 * 209.99487 * 10 8 6 40 40 H 1.09001 * 109.47460 * 330.00097 * 10 8 6 41 41 H 0.96701 * 113.99803 * 300.00100 * 13 11 10 42 42 H 1.08994 * 109.47457 * 304.99409 * 14 11 10 43 43 H 1.09004 * 109.47090 * 65.00272 * 14 11 10 44 44 H 0.97004 * 119.99744 * 0.02562 * 15 14 11 45 45 H 0.97002 * 119.99389 * 180.02562 * 19 18 16 46 46 H 1.07993 * 120.00137 * 0.02562 * 25 24 4 47 47 H 1.07999 * 119.99791 * 180.27262 * 26 25 24 48 48 H 1.07998 * 119.99941 * 179.83387 * 27 26 25 49 49 H 1.07996 * 120.00293 * 179.97438 * 28 27 26 50 50 H 1.08005 * 120.00174 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.6458 -0.3200 2.0688 6 6 3.5018 -0.7441 1.1040 7 8 4.0816 -0.4824 0.0714 8 7 4.2048 -1.0208 2.2202 9 6 3.5046 -1.3369 3.4675 10 6 5.6693 -1.0054 2.1859 11 6 6.1727 0.3991 2.5251 12 1 5.8296 0.6773 3.5215 13 8 5.6641 1.3312 1.5686 14 6 7.7022 0.4150 2.4899 15 7 8.1872 1.7255 2.9300 16 6 9.5325 1.9758 2.9813 17 1 10.2360 1.2073 2.6970 18 6 9.9920 3.2173 3.3988 19 7 9.1346 4.1538 3.7458 20 14 11.8272 3.5591 3.4682 21 1 12.2782 4.1075 2.1639 22 1 12.1068 4.5448 4.5430 23 1 12.5554 2.2965 3.7528 24 6 1.5121 -2.1907 1.0506 25 6 1.4547 -2.8275 -0.1750 26 6 1.0156 -4.1359 -0.2542 27 6 0.6251 -4.8044 0.8909 28 6 0.6776 -4.1660 2.1159 29 6 1.1211 -2.8592 2.1957 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0275 -0.0005 33 1 3.0851 1.3423 0.0005 34 1 1.6460 1.8947 -0.8900 35 1 1.6459 1.8948 0.8899 36 1 3.3355 -2.4120 3.5268 37 1 4.1102 -1.0170 4.3153 38 1 2.5469 -0.8168 3.4883 39 1 6.0573 -1.7163 2.9155 40 1 6.0125 -1.2835 1.1894 41 1 5.9303 1.1448 0.6578 42 1 8.0890 -0.3574 3.1546 43 1 8.0443 0.2239 1.4727 44 1 7.5553 2.4156 3.1857 45 1 9.4558 5.0215 4.0371 46 1 1.7566 -2.3041 -1.0701 47 1 0.9750 -4.6348 -1.2112 48 1 0.2796 -5.8257 0.8287 49 1 0.3721 -4.6881 3.0105 50 1 1.1617 -2.3601 3.1527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332608896.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:18 Heat of formation + Delta-G solvation = -45.274580 kcal Electronic energy + Delta-G solvation = -30063.284131 eV Core-core repulsion = 26090.700238 eV Total energy + Delta-G solvation = -3972.583893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73258 -39.93523 -38.78014 -37.55978 -36.40314 -35.87343 -33.27590 -32.88442 -31.78216 -30.95342 -28.90199 -28.18880 -28.01216 -26.59025 -24.69651 -23.77903 -23.19017 -22.81104 -22.10870 -20.05151 -19.24630 -18.46603 -18.04176 -17.68049 -17.16395 -16.74078 -16.56091 -16.41021 -16.14993 -15.94430 -15.36806 -15.27959 -15.23503 -15.10219 -14.79478 -14.29935 -14.22307 -14.01238 -13.84359 -13.69734 -13.60090 -13.35759 -13.20445 -13.18128 -12.97946 -12.83660 -12.77143 -12.62033 -12.49143 -12.17315 -12.03102 -11.88787 -11.83990 -11.82270 -11.13914 -10.98826 -10.84312 -9.78427 -9.60001 -9.53294 -9.36339 -9.03022 -7.96149 -5.26158 0.36954 0.54160 1.45425 1.48332 1.56509 1.63307 1.91376 2.54465 2.78836 3.00414 3.35039 3.46850 3.60342 3.65307 3.76090 3.88226 4.05579 4.14066 4.18137 4.22111 4.27449 4.30464 4.35847 4.39962 4.46157 4.50626 4.60610 4.62770 4.65473 4.67707 4.73693 4.77526 4.87072 4.90697 4.97721 5.06128 5.08748 5.20710 5.22773 5.43889 5.48309 5.57130 5.62059 5.66679 5.88626 6.01021 6.12400 6.24645 6.40266 6.77545 7.22383 7.31018 8.06807 8.30015 9.27328 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021340 B = 0.002484 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.804662 B =11268.928351 C =11903.739620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.535 5.535 3 C 0.022 3.978 4 C 0.115 3.885 5 H 0.078 0.922 6 C 0.523 3.477 7 O -0.551 6.551 8 N -0.606 5.606 9 C 0.065 3.935 10 C 0.097 3.903 11 C 0.099 3.901 12 H 0.090 0.910 13 O -0.564 6.564 14 C 0.125 3.875 15 N -0.741 5.741 16 C -0.248 4.248 17 H 0.077 0.923 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.977 3.023 21 H -0.288 1.288 22 H -0.294 1.294 23 H -0.266 1.266 24 C -0.091 4.091 25 C -0.100 4.100 26 C -0.133 4.133 27 C -0.118 4.118 28 C -0.122 4.122 29 C -0.114 4.114 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.025 0.975 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.375 0.625 42 H 0.041 0.959 43 H 0.020 0.980 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.111 0.889 47 H 0.133 0.867 48 H 0.143 0.857 49 H 0.149 0.851 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.897 -20.024 -2.509 31.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.259 5.259 3 C -0.126 4.126 4 C 0.004 3.996 5 H 0.096 0.904 6 C 0.311 3.689 7 O -0.429 6.429 8 N -0.339 5.339 9 C -0.077 4.077 10 C -0.027 4.027 11 C 0.038 3.962 12 H 0.108 0.892 13 O -0.370 6.370 14 C -0.003 4.003 15 N -0.383 5.383 16 C -0.379 4.379 17 H 0.095 0.905 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.806 3.194 21 H -0.216 1.216 22 H -0.220 1.220 23 H -0.191 1.191 24 C -0.092 4.092 25 C -0.118 4.118 26 C -0.151 4.151 27 C -0.136 4.136 28 C -0.140 4.140 29 C -0.132 4.132 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.132 0.868 40 H 0.094 0.906 41 H 0.223 0.777 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.130 0.870 47 H 0.151 0.849 48 H 0.161 0.839 49 H 0.167 0.833 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.524 -19.911 -2.962 30.962 hybrid contribution 1.003 1.209 0.245 1.589 sum -22.521 -18.703 -2.717 29.400 Atomic orbital electron populations 1.22450 0.85194 1.02768 1.01562 1.61684 1.09003 1.13964 1.41248 1.22463 1.01444 0.87864 1.00856 1.20463 0.90937 0.93684 0.94559 0.90414 1.20526 0.89608 0.75684 0.83058 1.90628 1.71790 1.48383 1.32059 1.47729 1.06138 1.69098 1.10890 1.22277 0.98117 1.02137 0.85149 1.22038 0.79951 0.96656 1.04050 1.22386 0.91609 0.89330 0.92878 0.89197 1.86503 1.76141 1.54358 1.19992 1.21431 0.93467 0.88145 0.97248 1.42463 1.03974 1.11953 1.79948 1.19663 0.84774 0.97402 1.36091 0.90503 1.25648 1.02276 0.96366 1.02745 1.69856 1.34575 1.04930 1.52719 0.85087 0.79746 0.77718 0.76877 1.21551 1.22020 1.19083 1.19348 1.01819 0.93229 0.94779 1.21065 0.98291 0.95005 0.97488 1.21397 0.99566 0.94254 0.99833 1.21519 0.98738 1.00842 0.92457 1.21422 0.99311 0.94465 0.98753 1.21323 0.98610 0.95586 0.97712 0.94847 0.90241 0.90747 0.91860 0.90337 0.95644 0.90207 0.89816 0.90150 0.86826 0.90565 0.77732 0.94145 0.96225 0.79431 0.94012 0.87040 0.84925 0.83895 0.83337 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.26 127.69 1.18 1.66 16 2 N -0.53 -12.34 3.93 -932.21 -3.66 -16.01 16 3 C 0.02 0.55 9.19 127.69 1.17 1.72 16 4 C 0.12 2.49 1.40 43.42 0.06 2.55 16 5 H 0.08 1.48 6.18 -2.39 -0.01 1.46 16 6 C 0.52 14.26 5.55 87.66 0.49 14.75 16 7 O -0.55 -19.04 13.08 5.31 0.07 -18.97 16 8 N -0.61 -14.14 2.83 -846.76 -2.39 -16.53 16 9 C 0.07 0.98 8.87 127.77 1.13 2.11 16 10 C 0.10 2.48 5.15 86.38 0.44 2.93 16 11 C 0.10 3.29 3.27 30.60 0.10 3.39 16 12 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 13 O -0.56 -21.74 12.09 -140.63 -1.70 -23.44 16 14 C 0.12 5.01 5.90 86.38 0.51 5.52 16 15 N -0.74 -39.26 5.55 -343.46 -1.91 -41.17 16 16 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 18 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 19 N -0.97 -61.54 13.06 21.65 0.28 -61.26 16 20 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 C -0.09 -1.69 3.60 -19.86 -0.07 -1.76 16 25 C -0.10 -2.01 8.41 22.27 0.19 -1.83 16 26 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 27 C -0.12 -1.44 10.05 22.27 0.22 -1.22 16 28 C -0.12 -1.37 10.05 22.27 0.22 -1.14 16 29 C -0.11 -1.52 8.18 22.27 0.18 -1.34 16 30 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.07 1.23 6.36 -2.39 -0.02 1.21 16 33 H 0.06 2.03 5.68 -2.38 -0.01 2.02 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.90 7.16 -2.39 -0.02 0.88 16 37 H 0.08 1.15 8.07 -2.39 -0.02 1.14 16 38 H 0.08 1.01 5.20 -2.39 -0.01 1.00 16 39 H 0.11 2.26 8.07 -2.39 -0.02 2.24 16 40 H 0.08 2.16 7.42 -2.39 -0.02 2.15 16 41 H 0.37 14.06 8.45 -74.06 -0.63 13.43 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.37 21.62 7.67 -92.71 -0.71 20.91 16 45 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.11 2.70 7.71 -2.91 -0.02 2.68 16 47 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 48 H 0.14 1.06 8.06 -2.91 -0.02 1.03 16 49 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 50 H 0.14 1.27 6.42 -2.91 -0.02 1.25 16 Total: -1.00 -75.67 397.52 -0.31 -75.98 By element: Atomic # 1 Polarization: 44.71 SS G_CDS: -0.39 Total: 44.32 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 7.37 Total: 7.89 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -7.68 Total: -134.97 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -1.63 Total: -42.41 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -75.67 -0.31 -75.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332608896.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.703 kcal (2) G-P(sol) polarization free energy of solvation -75.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds