Wall clock time and date at job start Tue Mar 31 2020 18:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00464 * 2 1 4 4 C 1.46908 * 111.00073 * 123.94962 * 2 1 3 5 5 H 1.08998 * 109.47562 * 190.60991 * 4 2 1 6 6 C 1.50706 * 109.46926 * 70.60862 * 4 2 1 7 7 O 1.21287 * 119.99987 * 340.00184 * 6 4 2 8 8 N 1.34776 * 119.99865 * 160.00013 * 6 4 2 9 9 C 1.46500 * 120.00016 * 0.02562 * 8 6 4 10 10 C 1.46502 * 119.99723 * 179.97438 * 8 6 4 11 11 C 1.53002 * 109.47011 * 90.00221 * 10 8 6 12 12 H 1.08996 * 109.46890 * 304.99602 * 11 10 8 13 13 O 1.42897 * 109.46822 * 65.00044 * 11 10 8 14 14 C 1.52998 * 109.46990 * 184.99634 * 11 10 8 15 15 N 1.46504 * 109.47144 * 179.97438 * 14 11 10 16 16 C 1.36931 * 120.00147 * 180.02562 * 15 14 11 17 17 H 1.08003 * 119.99969 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00241 * 179.97438 * 16 15 14 19 19 N 1.31613 * 119.99652 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00222 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47430 * 90.00028 * 20 18 16 22 22 H 1.48501 * 109.47197 * 210.00356 * 20 18 16 23 23 H 1.48504 * 109.47099 * 329.99994 * 20 18 16 24 24 C 1.50698 * 109.46928 * 310.61203 * 4 2 1 25 25 C 1.38238 * 120.00239 * 72.33203 * 24 4 2 26 26 C 1.38228 * 119.99928 * 179.97438 * 25 24 4 27 27 C 1.38242 * 120.00474 * 359.96004 * 26 25 24 28 28 C 1.38236 * 119.99209 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00703 * 0.07683 * 28 27 26 30 30 H 1.09002 * 109.47013 * 303.61133 * 1 2 3 31 31 H 1.08995 * 109.46887 * 63.60916 * 1 2 3 32 32 H 1.09003 * 109.47042 * 183.61673 * 1 2 3 33 33 H 1.08997 * 109.47054 * 183.95090 * 3 2 1 34 34 H 1.09005 * 109.46604 * 303.95279 * 3 2 1 35 35 H 1.08996 * 109.47174 * 63.94589 * 3 2 1 36 36 H 1.08991 * 109.47270 * 89.99777 * 9 8 6 37 37 H 1.08999 * 109.46939 * 209.99876 * 9 8 6 38 38 H 1.08998 * 109.46812 * 329.99346 * 9 8 6 39 39 H 1.08998 * 109.46873 * 210.00337 * 10 8 6 40 40 H 1.08996 * 109.47040 * 330.00052 * 10 8 6 41 41 H 0.96698 * 114.00684 * 59.99988 * 13 11 10 42 42 H 1.08993 * 109.47362 * 300.00251 * 14 11 10 43 43 H 1.09009 * 109.47002 * 60.00278 * 14 11 10 44 44 H 0.97002 * 119.99606 * 359.97438 * 15 14 11 45 45 H 0.97004 * 120.00016 * 180.02562 * 19 18 16 46 46 H 1.07995 * 119.99823 * 359.97438 * 25 24 4 47 47 H 1.08004 * 120.00270 * 179.97438 * 26 25 24 48 48 H 1.07996 * 120.00465 * 179.72273 * 27 26 25 49 49 H 1.08007 * 119.99514 * 179.97438 * 28 27 26 50 50 H 1.07994 * 120.00151 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 3.0686 -0.5963 1.2245 6 6 1.7350 -2.2340 0.9184 7 8 0.8784 -2.5878 0.1360 8 7 2.4541 -3.1539 1.5918 9 6 3.4884 -2.7266 2.5372 10 6 2.2005 -4.5810 1.3790 11 6 3.0880 -5.0928 0.2426 12 1 2.9251 -4.4851 -0.6474 13 8 4.4597 -5.0067 0.6339 14 6 2.7354 -6.5498 -0.0631 15 7 3.5847 -7.0397 -1.1517 16 6 3.4484 -8.3262 -1.6006 17 1 2.7149 -8.9798 -1.1520 18 6 4.2528 -8.7902 -2.6324 19 7 5.1469 -7.9938 -3.1788 20 14 4.0662 -10.5449 -3.2453 21 1 3.0654 -10.5825 -4.3417 22 1 5.3738 -11.0340 -3.7516 23 1 3.6113 -11.4131 -2.1298 24 6 1.3120 -0.3182 2.4040 25 6 -0.0062 -0.6630 2.6371 26 6 -0.6329 -0.2527 3.7988 27 6 0.0589 0.5017 4.7280 28 6 1.3775 0.8453 4.4955 29 6 2.0039 0.4359 3.3332 30 1 -0.3633 0.5689 0.8559 31 1 -0.3633 0.4568 -0.9205 32 1 -0.3633 -1.0256 0.0648 33 1 3.0828 1.3431 -0.0708 34 1 1.5899 1.9163 -0.8525 35 1 1.7044 1.8724 0.9232 36 1 3.0494 -2.6105 3.5280 37 1 4.2781 -3.4768 2.5753 38 1 3.9072 -1.7744 2.2116 39 1 2.4272 -5.1304 2.2927 40 1 1.1530 -4.7287 1.1167 41 1 4.6774 -5.5242 1.4211 42 1 2.8982 -7.1576 0.8269 43 1 1.6890 -6.6155 -0.3616 44 1 4.2432 -6.4525 -1.5549 45 1 5.7087 -8.3179 -3.9001 46 1 -0.5464 -1.2529 1.9115 47 1 -1.6629 -0.5217 3.9808 48 1 -0.4321 0.8261 5.6336 49 1 1.9179 1.4351 5.2213 50 1 3.0340 0.7048 3.1515 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332608899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:22 Heat of formation + Delta-G solvation = -17.187529 kcal Electronic energy + Delta-G solvation = -29961.816927 eV Core-core repulsion = 25990.450980 eV Total energy + Delta-G solvation = -3971.365947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.05561 -39.17514 -37.65413 -36.63736 -35.19174 -33.95101 -32.00800 -31.37777 -31.25799 -29.66056 -27.99888 -27.65464 -26.74126 -25.19103 -23.12449 -22.79070 -22.76830 -21.51355 -21.08097 -19.20583 -17.51362 -17.16673 -17.09162 -16.53517 -16.19487 -15.87002 -15.58795 -15.29067 -14.90821 -14.65465 -14.45868 -14.38989 -14.27174 -13.89967 -13.60005 -13.22733 -13.00476 -12.94662 -12.81721 -12.71062 -12.53607 -12.34912 -12.26676 -12.11318 -11.92050 -11.82901 -11.48884 -11.43525 -11.14059 -10.88934 -10.78092 -10.60937 -10.13936 -9.94403 -9.72851 -9.60454 -9.25371 -9.05010 -8.84214 -8.53634 -8.43727 -6.86047 -5.69265 -2.98517 0.91275 1.03755 2.58121 2.84920 3.36940 3.47696 3.52035 3.54140 3.87375 4.29372 4.37164 4.56418 4.60971 4.65394 4.76705 4.79573 4.80503 5.01531 5.07536 5.10726 5.14357 5.14905 5.23577 5.27204 5.40313 5.46289 5.47749 5.58702 5.61274 5.63885 5.64340 5.66795 5.73453 5.83351 6.01362 6.05896 6.07569 6.16203 6.17312 6.29642 6.49032 6.59928 6.60785 6.67493 6.80670 6.81778 7.34756 7.73721 8.07648 8.19009 8.48981 9.60231 10.18864 10.54831 11.53208 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020971 B = 0.002427 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.885821 B =11536.463864 C =11871.072580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.515 5.515 3 C 0.022 3.978 4 C 0.105 3.895 5 H 0.110 0.890 6 C 0.527 3.473 7 O -0.521 6.521 8 N -0.602 5.602 9 C 0.081 3.919 10 C 0.088 3.912 11 C 0.087 3.913 12 H 0.101 0.899 13 O -0.550 6.550 14 C 0.127 3.873 15 N -0.725 5.725 16 C -0.241 4.241 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.930 5.930 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.114 4.114 25 C -0.101 4.101 26 C -0.121 4.121 27 C -0.115 4.115 28 C -0.122 4.122 29 C -0.104 4.104 30 H 0.029 0.971 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.366 0.634 42 H 0.019 0.981 43 H 0.027 0.973 44 H 0.389 0.611 45 H 0.255 0.745 46 H 0.129 0.871 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.984 22.511 19.228 30.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.236 5.236 3 C -0.126 4.126 4 C -0.006 4.006 5 H 0.127 0.873 6 C 0.314 3.686 7 O -0.397 6.397 8 N -0.335 5.335 9 C -0.063 4.063 10 C -0.035 4.035 11 C 0.027 3.973 12 H 0.119 0.881 13 O -0.354 6.354 14 C -0.002 4.002 15 N -0.370 5.370 16 C -0.373 4.373 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.139 4.139 27 C -0.133 4.133 28 C -0.140 4.140 29 C -0.122 4.122 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.212 0.788 42 H 0.036 0.964 43 H 0.044 0.956 44 H 0.224 0.776 45 H 0.065 0.935 46 H 0.147 0.853 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.141 0.859 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.297 22.313 17.794 29.721 hybrid contribution -0.096 -0.705 0.762 1.043 sum -8.393 21.608 18.556 29.693 Atomic orbital electron populations 1.22937 0.86514 1.04227 1.00353 1.62073 1.09418 1.13562 1.38580 1.22455 1.00789 0.88485 1.00874 1.20690 1.00429 0.92117 0.87383 0.87269 1.20135 0.81330 0.87139 0.80026 1.90653 1.32959 1.81186 1.34856 1.47636 1.36981 1.06189 1.42714 1.21847 0.91108 1.01429 0.91876 1.22217 1.02014 0.79818 0.99437 1.22545 0.81080 0.97216 0.96493 0.88086 1.86624 1.26263 1.72555 1.49976 1.21213 0.95228 0.91271 0.92495 1.42243 1.43002 1.12595 1.39155 1.19219 1.15761 0.88819 1.13459 0.91305 1.24760 0.98825 0.98165 0.99245 1.69686 1.24920 1.35137 1.28077 0.86186 0.76832 0.84452 0.78680 1.21713 1.21772 1.20816 1.20169 0.95241 1.00057 0.96148 1.21350 0.94445 0.98960 0.97215 1.21173 1.00174 0.98554 0.94027 1.21205 0.94767 0.98145 0.99214 1.21125 0.95144 1.00405 0.97353 1.21041 0.99704 0.97764 0.93719 0.95225 0.91578 0.88497 0.91227 0.90878 0.95267 0.92934 0.90089 0.91454 0.90217 0.88906 0.78828 0.96359 0.95567 0.77647 0.93527 0.85304 0.85914 0.86067 0.85911 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 7.72 60.06 0.46 0.54 16 2 N -0.51 -6.05 4.79 -246.00 -1.18 -7.22 16 3 C 0.02 0.20 9.40 60.07 0.56 0.76 16 4 C 0.11 1.16 1.74 -70.01 -0.12 1.03 16 5 H 0.11 1.06 5.93 -51.93 -0.31 0.75 16 6 C 0.53 7.30 5.98 -10.98 -0.07 7.23 16 7 O -0.52 -8.97 13.46 5.55 0.07 -8.90 16 8 N -0.60 -7.44 2.84 -181.57 -0.52 -7.95 16 9 C 0.08 0.73 9.82 59.85 0.59 1.32 16 10 C 0.09 1.19 5.07 -4.04 -0.02 1.17 16 11 C 0.09 1.50 3.30 -26.73 -0.09 1.41 16 12 H 0.10 2.07 8.14 -51.93 -0.42 1.64 16 13 O -0.55 -9.26 11.91 -35.23 -0.42 -9.68 16 14 C 0.13 2.62 5.92 -4.04 -0.02 2.59 16 15 N -0.73 -19.36 5.49 -59.91 -0.33 -19.68 16 16 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 17 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -29.31 13.06 55.49 0.72 -28.59 16 20 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 C -0.11 -1.07 3.51 -104.62 -0.37 -1.43 16 25 C -0.10 -1.00 6.72 -39.58 -0.27 -1.26 16 26 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 27 C -0.12 -0.83 10.05 -39.58 -0.40 -1.22 16 28 C -0.12 -0.85 10.05 -39.58 -0.40 -1.24 16 29 C -0.10 -0.79 9.43 -39.58 -0.37 -1.16 16 30 H 0.03 0.31 5.91 -51.93 -0.31 0.00 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.30 4.42 -51.93 -0.23 1.07 16 33 H 0.07 0.56 8.09 -51.93 -0.42 0.13 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.03 0.24 7.38 -51.93 -0.38 -0.14 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.70 7.11 -51.93 -0.37 0.34 16 38 H 0.07 0.53 5.94 -51.93 -0.31 0.22 16 39 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 40 H 0.09 1.35 7.42 -51.93 -0.39 0.96 16 41 H 0.37 4.86 9.04 45.56 0.41 5.27 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.03 0.56 8.14 -51.92 -0.42 0.13 16 44 H 0.39 11.21 7.54 -40.82 -0.31 10.90 16 45 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 46 H 0.13 1.43 5.59 -52.49 -0.29 1.14 16 47 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 48 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 49 H 0.12 0.60 8.06 -52.48 -0.42 0.17 16 50 H 0.12 0.72 7.98 -52.49 -0.42 0.30 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -35.70 396.25 -8.93 -44.64 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -7.09 Total: 12.76 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.15 Total: 0.65 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -1.30 Total: -63.45 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.35 Total: -18.58 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.70 -8.93 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332608899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.450 kcal (2) G-P(sol) polarization free energy of solvation -35.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds