Wall clock time and date at job start Tue Mar 31 2020 18:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00464 * 2 1 4 4 C 1.46908 * 111.00073 * 123.94962 * 2 1 3 5 5 H 1.08998 * 109.47562 * 190.60991 * 4 2 1 6 6 C 1.50706 * 109.46926 * 70.60862 * 4 2 1 7 7 O 1.21287 * 119.99987 * 340.00184 * 6 4 2 8 8 N 1.34776 * 119.99865 * 160.00013 * 6 4 2 9 9 C 1.46500 * 120.00016 * 0.02562 * 8 6 4 10 10 C 1.46502 * 119.99723 * 179.97438 * 8 6 4 11 11 C 1.53002 * 109.47011 * 90.00221 * 10 8 6 12 12 H 1.08996 * 109.46890 * 304.99602 * 11 10 8 13 13 O 1.42897 * 109.46822 * 65.00044 * 11 10 8 14 14 C 1.52998 * 109.46990 * 184.99634 * 11 10 8 15 15 N 1.46504 * 109.47144 * 179.97438 * 14 11 10 16 16 C 1.36931 * 120.00147 * 180.02562 * 15 14 11 17 17 H 1.08003 * 119.99969 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00241 * 179.97438 * 16 15 14 19 19 N 1.31613 * 119.99652 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00222 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47430 * 90.00028 * 20 18 16 22 22 H 1.48501 * 109.47197 * 210.00356 * 20 18 16 23 23 H 1.48504 * 109.47099 * 329.99994 * 20 18 16 24 24 C 1.50698 * 109.46928 * 310.61203 * 4 2 1 25 25 C 1.38238 * 120.00239 * 72.33203 * 24 4 2 26 26 C 1.38228 * 119.99928 * 179.97438 * 25 24 4 27 27 C 1.38242 * 120.00474 * 359.96004 * 26 25 24 28 28 C 1.38236 * 119.99209 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00703 * 0.07683 * 28 27 26 30 30 H 1.09002 * 109.47013 * 303.61133 * 1 2 3 31 31 H 1.08995 * 109.46887 * 63.60916 * 1 2 3 32 32 H 1.09003 * 109.47042 * 183.61673 * 1 2 3 33 33 H 1.08997 * 109.47054 * 183.95090 * 3 2 1 34 34 H 1.09005 * 109.46604 * 303.95279 * 3 2 1 35 35 H 1.08996 * 109.47174 * 63.94589 * 3 2 1 36 36 H 1.08991 * 109.47270 * 89.99777 * 9 8 6 37 37 H 1.08999 * 109.46939 * 209.99876 * 9 8 6 38 38 H 1.08998 * 109.46812 * 329.99346 * 9 8 6 39 39 H 1.08998 * 109.46873 * 210.00337 * 10 8 6 40 40 H 1.08996 * 109.47040 * 330.00052 * 10 8 6 41 41 H 0.96698 * 114.00684 * 59.99988 * 13 11 10 42 42 H 1.08993 * 109.47362 * 300.00251 * 14 11 10 43 43 H 1.09009 * 109.47002 * 60.00278 * 14 11 10 44 44 H 0.97002 * 119.99606 * 359.97438 * 15 14 11 45 45 H 0.97004 * 120.00016 * 180.02562 * 19 18 16 46 46 H 1.07995 * 119.99823 * 359.97438 * 25 24 4 47 47 H 1.08004 * 120.00270 * 179.97438 * 26 25 24 48 48 H 1.07996 * 120.00465 * 179.72273 * 27 26 25 49 49 H 1.08007 * 119.99514 * 179.97438 * 28 27 26 50 50 H 1.07994 * 120.00151 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 3.0686 -0.5963 1.2245 6 6 1.7350 -2.2340 0.9184 7 8 0.8784 -2.5878 0.1360 8 7 2.4541 -3.1539 1.5918 9 6 3.4884 -2.7266 2.5372 10 6 2.2005 -4.5810 1.3790 11 6 3.0880 -5.0928 0.2426 12 1 2.9251 -4.4851 -0.6474 13 8 4.4597 -5.0067 0.6339 14 6 2.7354 -6.5498 -0.0631 15 7 3.5847 -7.0397 -1.1517 16 6 3.4484 -8.3262 -1.6006 17 1 2.7149 -8.9798 -1.1520 18 6 4.2528 -8.7902 -2.6324 19 7 5.1469 -7.9938 -3.1788 20 14 4.0662 -10.5449 -3.2453 21 1 3.0654 -10.5825 -4.3417 22 1 5.3738 -11.0340 -3.7516 23 1 3.6113 -11.4131 -2.1298 24 6 1.3120 -0.3182 2.4040 25 6 -0.0062 -0.6630 2.6371 26 6 -0.6329 -0.2527 3.7988 27 6 0.0589 0.5017 4.7280 28 6 1.3775 0.8453 4.4955 29 6 2.0039 0.4359 3.3332 30 1 -0.3633 0.5689 0.8559 31 1 -0.3633 0.4568 -0.9205 32 1 -0.3633 -1.0256 0.0648 33 1 3.0828 1.3431 -0.0708 34 1 1.5899 1.9163 -0.8525 35 1 1.7044 1.8724 0.9232 36 1 3.0494 -2.6105 3.5280 37 1 4.2781 -3.4768 2.5753 38 1 3.9072 -1.7744 2.2116 39 1 2.4272 -5.1304 2.2927 40 1 1.1530 -4.7287 1.1167 41 1 4.6774 -5.5242 1.4211 42 1 2.8982 -7.1576 0.8269 43 1 1.6890 -6.6155 -0.3616 44 1 4.2432 -6.4525 -1.5549 45 1 5.7087 -8.3179 -3.9001 46 1 -0.5464 -1.2529 1.9115 47 1 -1.6629 -0.5217 3.9808 48 1 -0.4321 0.8261 5.6336 49 1 1.9179 1.4351 5.2213 50 1 3.0340 0.7048 3.1515 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332608899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:21 Heat of formation + Delta-G solvation = -44.732994 kcal Electronic energy + Delta-G solvation = -29963.011388 eV Core-core repulsion = 25990.450980 eV Total energy + Delta-G solvation = -3972.560408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.91774 -40.05603 -38.85727 -37.58262 -36.40511 -35.80265 -33.28159 -32.66000 -31.96493 -31.04215 -28.93512 -28.43679 -27.87990 -26.61177 -24.72137 -23.63086 -23.40818 -22.83479 -22.21649 -20.15677 -19.25206 -18.40431 -17.99658 -17.59359 -17.20455 -16.72086 -16.61563 -16.49515 -16.36839 -15.95704 -15.44651 -15.31369 -15.27816 -15.11994 -14.82311 -14.46038 -14.21788 -13.94256 -13.79481 -13.65045 -13.56227 -13.43234 -13.30840 -13.02304 -12.98701 -12.81939 -12.72634 -12.64042 -12.46206 -12.19509 -12.11549 -12.00435 -11.83213 -11.82414 -11.24747 -10.99598 -10.75327 -9.85275 -9.71936 -9.55506 -9.32418 -9.03242 -7.95484 -5.25994 0.30958 0.45287 1.45424 1.48785 1.56388 1.57362 1.90514 2.54771 2.75527 3.07795 3.35405 3.47563 3.49893 3.62424 3.75217 3.86996 4.03803 4.07734 4.15110 4.17585 4.24808 4.29685 4.34998 4.43670 4.46622 4.54449 4.57200 4.62255 4.66692 4.69161 4.71101 4.78493 4.89732 4.97139 4.97311 4.99368 5.07587 5.12554 5.20705 5.45019 5.50429 5.51228 5.56241 5.59316 5.84560 6.01818 6.04642 6.24941 6.38932 6.89461 7.17232 7.31181 8.06920 8.30464 9.28132 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020971 B = 0.002427 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.885821 B =11536.463864 C =11871.072580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.541 5.541 3 C 0.025 3.975 4 C 0.113 3.887 5 H 0.124 0.876 6 C 0.517 3.483 7 O -0.566 6.566 8 N -0.602 5.602 9 C 0.076 3.924 10 C 0.099 3.901 11 C 0.107 3.893 12 H 0.061 0.939 13 O -0.560 6.560 14 C 0.124 3.876 15 N -0.742 5.742 16 C -0.249 4.249 17 H 0.078 0.922 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.979 3.021 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.265 1.265 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.130 4.130 27 C -0.115 4.115 28 C -0.120 4.120 29 C -0.102 4.102 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.384 0.616 42 H 0.042 0.958 43 H 0.021 0.979 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.104 0.896 47 H 0.131 0.869 48 H 0.144 0.856 49 H 0.150 0.850 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.501 23.335 22.144 33.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.264 5.264 3 C -0.123 4.123 4 C 0.002 3.998 5 H 0.142 0.858 6 C 0.305 3.695 7 O -0.445 6.445 8 N -0.333 5.333 9 C -0.066 4.066 10 C -0.025 4.025 11 C 0.046 3.954 12 H 0.079 0.921 13 O -0.367 6.367 14 C -0.003 4.003 15 N -0.384 5.384 16 C -0.380 4.380 17 H 0.096 0.904 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.807 3.193 21 H -0.215 1.215 22 H -0.220 1.220 23 H -0.190 1.190 24 C -0.122 4.122 25 C -0.138 4.138 26 C -0.148 4.148 27 C -0.133 4.133 28 C -0.137 4.137 29 C -0.120 4.120 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.133 0.867 40 H 0.096 0.904 41 H 0.233 0.767 42 H 0.059 0.941 43 H 0.039 0.961 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.123 0.877 47 H 0.149 0.851 48 H 0.162 0.838 49 H 0.167 0.833 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.825 23.144 20.785 32.077 hybrid contribution -0.273 -0.907 -0.067 0.950 sum -8.098 22.237 20.719 31.454 Atomic orbital electron populations 1.22760 0.86907 1.02734 1.00658 1.62036 1.09381 1.15284 1.39676 1.22479 1.01298 0.87010 1.01471 1.20618 1.01229 0.89879 0.88074 0.85815 1.20826 0.80716 0.88701 0.79284 1.90632 1.34915 1.82099 1.36875 1.47743 1.37369 1.05410 1.42817 1.22085 0.90432 1.02202 0.91900 1.22001 1.00110 0.81146 0.99207 1.22148 0.82194 0.94362 0.96681 0.92101 1.86587 1.25868 1.72974 1.51226 1.21421 0.93814 0.93687 0.91391 1.42463 1.43464 1.11877 1.40625 1.19674 1.15285 0.89857 1.13214 0.90426 1.25674 0.98947 1.02605 0.99883 1.69862 1.26196 1.37230 1.28840 0.85067 0.76469 0.79479 0.78283 1.21547 1.21975 1.18992 1.20012 0.95040 1.01202 0.95944 1.21255 0.95003 0.99882 0.97682 1.21339 1.00812 0.98876 0.93810 1.21519 0.95078 0.97194 0.99516 1.21474 0.95069 0.99811 0.97392 1.21268 1.00583 0.96877 0.93298 0.94324 0.91610 0.91009 0.90182 0.90625 0.94323 0.91013 0.89448 0.90192 0.86693 0.90394 0.76748 0.94055 0.96116 0.79414 0.93983 0.87747 0.85112 0.83835 0.83253 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 7.72 127.69 0.99 1.39 16 2 N -0.54 -12.82 4.79 -932.19 -4.46 -17.28 16 3 C 0.02 0.41 9.40 127.69 1.20 1.61 16 4 C 0.11 2.42 1.74 43.42 0.08 2.50 16 5 H 0.12 2.18 5.93 -2.39 -0.01 2.17 16 6 C 0.52 14.62 5.98 87.66 0.52 15.14 16 7 O -0.57 -20.83 13.46 -3.05 -0.04 -20.87 16 8 N -0.60 -14.45 2.84 -846.76 -2.40 -16.85 16 9 C 0.08 1.18 9.82 127.77 1.26 2.43 16 10 C 0.10 2.61 5.07 86.38 0.44 3.05 16 11 C 0.11 3.72 3.30 30.59 0.10 3.82 16 12 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 13 O -0.56 -18.46 11.91 -148.98 -1.77 -20.24 16 14 C 0.12 5.14 5.92 86.38 0.51 5.65 16 15 N -0.74 -40.23 5.49 -343.45 -1.89 -42.12 16 16 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 19 N -0.97 -62.46 13.06 21.65 0.28 -62.18 16 20 Si 0.98 47.64 29.55 68.60 2.03 49.67 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 C -0.12 -2.09 3.51 -19.87 -0.07 -2.16 16 25 C -0.12 -2.34 6.72 22.27 0.15 -2.19 16 26 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 27 C -0.12 -1.32 10.05 22.27 0.22 -1.10 16 28 C -0.12 -1.22 10.05 22.27 0.22 -1.00 16 29 C -0.10 -1.23 9.43 22.27 0.21 -1.02 16 30 H 0.04 0.83 5.91 -2.39 -0.01 0.81 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 2.11 4.42 -2.39 -0.01 2.10 16 33 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.04 0.57 7.38 -2.39 -0.02 0.55 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 1.27 7.11 -2.39 -0.02 1.25 16 38 H 0.08 1.05 5.94 -2.39 -0.01 1.03 16 39 H 0.12 2.21 8.07 -2.39 -0.02 2.19 16 40 H 0.08 2.31 7.42 -2.39 -0.02 2.30 16 41 H 0.38 9.44 9.04 -74.06 -0.67 8.77 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.37 22.23 7.54 -92.71 -0.70 21.53 16 45 H 0.25 15.58 8.31 -92.71 -0.77 14.80 16 46 H 0.10 2.53 5.59 -2.91 -0.02 2.51 16 47 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 48 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 49 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 50 H 0.14 1.10 7.98 -2.91 -0.02 1.08 16 Total: -1.00 -79.88 396.25 -1.31 -81.19 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: -0.41 Total: 40.29 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 7.36 Total: 8.38 kcal Atomic # 7 Polarization: -129.96 SS G_CDS: -8.47 Total: -138.43 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -1.82 Total: -41.11 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -79.88 -1.31 -81.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332608899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.458 kcal (2) G-P(sol) polarization free energy of solvation -79.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds