Wall clock time and date at job start Tue Mar 31 2020 18:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46891 * 111.00174 * 2 1 4 4 C 1.46902 * 110.99759 * 123.95927 * 2 1 3 5 5 H 1.09000 * 109.46642 * 301.01481 * 4 2 1 6 6 C 1.50696 * 109.47437 * 61.01759 * 4 2 1 7 7 O 1.21284 * 119.99792 * 26.40249 * 6 4 2 8 8 N 1.34779 * 120.00067 * 206.39430 * 6 4 2 9 9 C 1.46503 * 119.99851 * 0.02562 * 8 6 4 10 10 C 1.46496 * 119.99873 * 180.02562 * 8 6 4 11 11 C 1.53001 * 109.47204 * 90.00588 * 10 8 6 12 12 H 1.09000 * 109.46571 * 304.99451 * 11 10 8 13 13 O 1.42894 * 109.47120 * 64.99650 * 11 10 8 14 14 C 1.53003 * 109.47165 * 184.99856 * 11 10 8 15 15 N 1.46496 * 109.46984 * 179.97438 * 14 11 10 16 16 C 1.36936 * 119.99547 * 179.72185 * 15 14 11 17 17 H 1.07998 * 120.00310 * 0.27790 * 16 15 14 18 18 C 1.38815 * 119.99780 * 180.27845 * 16 15 14 19 19 N 1.31624 * 120.00235 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00141 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47026 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47233 * 119.99928 * 20 18 16 23 23 H 1.48502 * 109.46990 * 239.99908 * 20 18 16 24 24 C 1.50699 * 109.46905 * 181.02543 * 4 2 1 25 25 C 1.38241 * 119.99598 * 313.14694 * 24 4 2 26 26 C 1.38235 * 119.99613 * 179.79201 * 25 24 4 27 27 C 1.38238 * 120.00136 * 0.44134 * 26 25 24 28 28 C 1.38234 * 119.99734 * 359.81192 * 27 26 25 29 29 C 1.38229 * 120.00275 * 359.97438 * 28 27 26 30 30 H 1.08995 * 109.47003 * 300.00369 * 1 2 3 31 31 H 1.09007 * 109.46761 * 59.99929 * 1 2 3 32 32 H 1.08998 * 109.47178 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47312 * 180.58911 * 3 2 1 34 34 H 1.08998 * 109.47102 * 300.58724 * 3 2 1 35 35 H 1.08998 * 109.47190 * 60.58411 * 3 2 1 36 36 H 1.09003 * 109.46699 * 269.99631 * 9 8 6 37 37 H 1.09000 * 109.47236 * 29.99247 * 9 8 6 38 38 H 1.08995 * 109.47104 * 150.00091 * 9 8 6 39 39 H 1.09003 * 109.47566 * 330.00064 * 10 8 6 40 40 H 1.09000 * 109.46870 * 209.99998 * 10 8 6 41 41 H 0.96698 * 114.00436 * 60.00737 * 13 11 10 42 42 H 1.09004 * 109.46847 * 59.99464 * 14 11 10 43 43 H 1.08996 * 109.46837 * 300.00027 * 14 11 10 44 44 H 0.96997 * 120.00233 * 0.02562 * 15 14 11 45 45 H 0.96997 * 120.00188 * 180.02562 * 19 18 16 46 46 H 1.07993 * 120.00009 * 0.02562 * 25 24 4 47 47 H 1.08005 * 119.99931 * 180.27280 * 26 25 24 48 48 H 1.07997 * 120.00199 * 179.83721 * 27 26 25 49 49 H 1.08004 * 119.99489 * 180.02562 * 28 27 26 50 50 H 1.08004 * 120.00084 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 1.6312 -0.3310 2.0682 6 6 1.5328 -2.1968 1.0369 7 8 1.2683 -2.6738 -0.0463 8 7 1.4130 -2.9462 2.1507 9 6 1.7321 -2.3698 3.4593 10 6 0.9638 -4.3371 2.0528 11 6 2.1762 -5.2534 1.8754 12 1 2.7582 -4.9231 1.0150 13 8 2.9891 -5.2004 3.0493 14 6 1.7009 -6.6899 1.6485 15 7 2.8618 -7.5671 1.4780 16 6 2.6815 -8.9079 1.2663 17 1 1.6834 -9.3180 1.2205 18 6 3.7816 -9.7401 1.1105 19 7 4.9980 -9.2403 1.1658 20 14 3.5357 -11.5691 0.8210 21 1 2.0829 -11.8760 0.7998 22 1 4.1406 -11.9499 -0.4807 23 1 4.1881 -12.3352 1.9131 24 6 3.5017 -0.7226 1.1185 25 6 4.1852 -0.9627 -0.0589 26 6 5.5667 -0.9186 -0.0774 27 6 6.2650 -0.6433 1.0835 28 6 5.5817 -0.4085 2.2619 29 6 4.2000 -0.4482 2.2794 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 3.0851 1.3423 -0.0106 34 1 1.6375 1.8979 -0.8847 35 1 1.6545 1.8914 0.8952 36 1 2.7864 -2.5347 3.6815 37 1 1.5270 -1.2994 3.4446 38 1 1.1204 -2.8465 4.2252 39 1 0.2985 -4.4447 1.1961 40 1 0.4310 -4.6118 2.9632 41 1 2.5348 -5.4813 3.8554 42 1 1.0807 -6.7303 0.7530 43 1 1.1188 -7.0201 2.5088 44 1 3.7582 -7.1989 1.5195 45 1 5.7667 -9.8217 1.0566 46 1 3.6397 -1.1810 -0.9650 47 1 6.1006 -1.1018 -0.9982 48 1 7.3444 -0.6115 1.0697 49 1 6.1273 -0.1930 3.1688 50 1 3.6661 -0.2643 3.2001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332608905.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:28 Heat of formation + Delta-G solvation = -20.949895 kcal Electronic energy + Delta-G solvation = -30196.930670 eV Core-core repulsion = 26225.401575 eV Total energy + Delta-G solvation = -3971.529095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.77775 -39.00432 -37.64461 -36.66233 -35.19398 -33.95011 -32.13571 -31.27219 -30.96564 -29.65247 -28.04526 -27.37038 -26.76673 -25.19829 -23.21237 -22.73205 -22.45163 -21.40745 -21.08382 -19.07350 -17.47074 -17.18889 -17.05792 -16.65397 -16.03786 -15.79019 -15.41030 -15.22147 -14.83787 -14.52549 -14.44395 -14.39528 -14.15762 -13.68039 -13.46710 -13.16435 -13.01868 -12.92824 -12.78696 -12.70122 -12.51275 -12.44323 -12.34772 -12.12386 -11.98355 -11.78475 -11.46882 -11.10752 -11.08707 -10.89268 -10.79884 -10.61536 -10.11322 -9.97338 -9.75059 -9.62619 -8.97103 -8.85152 -8.76971 -8.58445 -8.45935 -6.86298 -5.69736 -2.99014 1.17415 1.35502 2.61392 2.81460 3.46820 3.51784 3.54539 3.58228 3.82423 4.38158 4.48174 4.60863 4.62778 4.82614 4.86822 4.93399 4.95313 4.99628 5.07237 5.10113 5.11387 5.22449 5.30248 5.32644 5.38595 5.42413 5.55415 5.60766 5.65188 5.66671 5.73128 5.75136 5.81286 5.83920 5.98914 6.05085 6.28944 6.34164 6.39928 6.47100 6.47510 6.59328 6.68082 6.73939 6.80769 6.91236 7.32844 7.73828 8.08985 8.19215 8.48379 9.59748 10.18380 10.54359 11.52713 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.002971 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.244887 B = 9423.055839 C =10273.809865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.521 5.521 3 C 0.025 3.975 4 C 0.112 3.888 5 H 0.067 0.933 6 C 0.521 3.479 7 O -0.513 6.513 8 N -0.605 5.605 9 C 0.077 3.923 10 C 0.088 3.912 11 C 0.088 3.912 12 H 0.099 0.901 13 O -0.549 6.549 14 C 0.127 3.873 15 N -0.725 5.725 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.929 5.929 20 Si 0.907 3.093 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.292 1.292 24 C -0.084 4.084 25 C -0.081 4.081 26 C -0.122 4.122 27 C -0.112 4.112 28 C -0.122 4.122 29 C -0.109 4.109 30 H 0.023 0.977 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.365 0.635 42 H 0.027 0.973 43 H 0.019 0.981 44 H 0.389 0.611 45 H 0.254 0.746 46 H 0.133 0.867 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.122 0.878 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 26.201 4.874 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.245 5.245 3 C -0.123 4.123 4 C 0.000 4.000 5 H 0.084 0.916 6 C 0.307 3.693 7 O -0.387 6.387 8 N -0.339 5.339 9 C -0.066 4.066 10 C -0.035 4.035 11 C 0.027 3.973 12 H 0.117 0.883 13 O -0.353 6.353 14 C -0.002 4.002 15 N -0.370 5.370 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.578 5.578 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.085 4.085 25 C -0.099 4.099 26 C -0.140 4.140 27 C -0.131 4.131 28 C -0.140 4.140 29 C -0.127 4.127 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.211 0.789 42 H 0.044 0.956 43 H 0.036 0.964 44 H 0.223 0.777 45 H 0.064 0.936 46 H 0.151 0.849 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.683 25.772 3.389 26.608 hybrid contribution -0.462 -0.814 1.106 1.449 sum -6.146 24.958 4.495 26.094 Atomic orbital electron populations 1.22465 0.86477 1.03066 1.00565 1.61662 1.08272 1.13512 1.41086 1.22439 1.01484 0.87745 1.00618 1.20528 0.92874 0.92700 0.93873 0.91584 1.20168 0.77693 0.87345 0.84076 1.90728 1.48378 1.72862 1.26730 1.47690 1.67038 1.12321 1.06841 1.21933 1.02214 0.98087 0.84341 1.22255 0.97576 0.80160 1.03539 1.22518 0.91471 0.94393 0.88870 0.88297 1.86628 1.41902 1.89427 1.17310 1.21216 0.91921 0.88927 0.98154 1.42247 1.03389 1.04527 1.86809 1.19268 0.92625 0.84049 1.41263 0.91248 1.24763 0.95230 0.98090 1.02910 1.69700 0.96956 1.34218 1.56898 0.86119 0.77168 0.85515 0.77400 1.20587 1.21850 1.21889 1.19254 0.92322 1.02441 0.94475 1.21127 0.93985 0.96525 0.98252 1.21224 0.94238 0.99967 0.98563 1.21214 0.99984 0.98918 0.92938 1.21049 0.93982 1.00791 0.98153 1.20956 0.94509 1.00283 0.96997 0.95894 0.90773 0.90565 0.90713 0.90936 0.95707 0.91399 0.91833 0.91035 0.88899 0.90191 0.78895 0.95575 0.96375 0.77657 0.93593 0.84922 0.85857 0.86059 0.85970 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.28 60.07 0.56 0.78 16 2 N -0.52 -5.76 4.14 -246.00 -1.02 -6.78 16 3 C 0.03 0.22 9.23 60.06 0.55 0.77 16 4 C 0.11 1.26 1.42 -70.02 -0.10 1.16 16 5 H 0.07 0.61 5.79 -51.93 -0.30 0.31 16 6 C 0.52 7.36 5.73 -10.99 -0.06 7.30 16 7 O -0.51 -9.17 15.15 5.55 0.08 -9.09 16 8 N -0.61 -7.54 2.84 -181.57 -0.52 -8.05 16 9 C 0.08 0.69 9.47 59.85 0.57 1.26 16 10 C 0.09 1.19 5.11 -4.04 -0.02 1.17 16 11 C 0.09 1.54 3.30 -26.73 -0.09 1.45 16 12 H 0.10 2.07 8.14 -51.93 -0.42 1.65 16 13 O -0.55 -9.44 12.64 -35.23 -0.45 -9.89 16 14 C 0.13 2.63 5.92 -4.04 -0.02 2.61 16 15 N -0.72 -19.43 5.49 -59.91 -0.33 -19.75 16 16 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -29.30 13.06 55.49 0.72 -28.58 16 20 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 24 C -0.08 -0.98 3.48 -104.62 -0.36 -1.34 16 25 C -0.08 -1.03 8.40 -39.58 -0.33 -1.36 16 26 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 27 C -0.11 -1.18 10.05 -39.58 -0.40 -1.58 16 28 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 29 C -0.11 -1.09 9.29 -39.59 -0.37 -1.46 16 30 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 32 H 0.08 0.91 6.33 -51.93 -0.33 0.58 16 33 H 0.07 0.68 6.24 -51.93 -0.32 0.36 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 37 H 0.06 0.44 5.79 -51.93 -0.30 0.14 16 38 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 39 H 0.09 1.36 7.42 -51.93 -0.39 0.97 16 40 H 0.08 0.86 7.89 -51.93 -0.41 0.45 16 41 H 0.37 4.98 9.05 45.56 0.41 5.39 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.39 11.27 7.54 -40.82 -0.31 10.96 16 45 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.13 1.87 7.93 -52.49 -0.42 1.45 16 47 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 48 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 49 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 50 H 0.12 0.91 7.82 -52.48 -0.41 0.50 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -36.04 405.54 -8.91 -44.95 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -7.37 Total: 13.42 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.12 Total: -0.36 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -1.14 Total: -63.17 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.36 Total: -18.98 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.04 -8.91 -44.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332608905.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.001 kcal (2) G-P(sol) polarization free energy of solvation -36.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds