Wall clock time and date at job start Tue Mar 31 2020 18:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46891 * 111.00174 * 2 1 4 4 C 1.46902 * 110.99759 * 123.95927 * 2 1 3 5 5 H 1.09000 * 109.46642 * 301.01481 * 4 2 1 6 6 C 1.50696 * 109.47437 * 61.01759 * 4 2 1 7 7 O 1.21284 * 119.99792 * 26.40249 * 6 4 2 8 8 N 1.34779 * 120.00067 * 206.39430 * 6 4 2 9 9 C 1.46503 * 119.99851 * 0.02562 * 8 6 4 10 10 C 1.46496 * 119.99873 * 180.02562 * 8 6 4 11 11 C 1.53001 * 109.47204 * 90.00588 * 10 8 6 12 12 H 1.09000 * 109.46571 * 304.99451 * 11 10 8 13 13 O 1.42894 * 109.47120 * 64.99650 * 11 10 8 14 14 C 1.53003 * 109.47165 * 184.99856 * 11 10 8 15 15 N 1.46496 * 109.46984 * 179.97438 * 14 11 10 16 16 C 1.36936 * 119.99547 * 179.72185 * 15 14 11 17 17 H 1.07998 * 120.00310 * 0.27790 * 16 15 14 18 18 C 1.38815 * 119.99780 * 180.27845 * 16 15 14 19 19 N 1.31624 * 120.00235 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00141 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47026 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47233 * 119.99928 * 20 18 16 23 23 H 1.48502 * 109.46990 * 239.99908 * 20 18 16 24 24 C 1.50699 * 109.46905 * 181.02543 * 4 2 1 25 25 C 1.38241 * 119.99598 * 313.14694 * 24 4 2 26 26 C 1.38235 * 119.99613 * 179.79201 * 25 24 4 27 27 C 1.38238 * 120.00136 * 0.44134 * 26 25 24 28 28 C 1.38234 * 119.99734 * 359.81192 * 27 26 25 29 29 C 1.38229 * 120.00275 * 359.97438 * 28 27 26 30 30 H 1.08995 * 109.47003 * 300.00369 * 1 2 3 31 31 H 1.09007 * 109.46761 * 59.99929 * 1 2 3 32 32 H 1.08998 * 109.47178 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47312 * 180.58911 * 3 2 1 34 34 H 1.08998 * 109.47102 * 300.58724 * 3 2 1 35 35 H 1.08998 * 109.47190 * 60.58411 * 3 2 1 36 36 H 1.09003 * 109.46699 * 269.99631 * 9 8 6 37 37 H 1.09000 * 109.47236 * 29.99247 * 9 8 6 38 38 H 1.08995 * 109.47104 * 150.00091 * 9 8 6 39 39 H 1.09003 * 109.47566 * 330.00064 * 10 8 6 40 40 H 1.09000 * 109.46870 * 209.99998 * 10 8 6 41 41 H 0.96698 * 114.00436 * 60.00737 * 13 11 10 42 42 H 1.09004 * 109.46847 * 59.99464 * 14 11 10 43 43 H 1.08996 * 109.46837 * 300.00027 * 14 11 10 44 44 H 0.96997 * 120.00233 * 0.02562 * 15 14 11 45 45 H 0.96997 * 120.00188 * 180.02562 * 19 18 16 46 46 H 1.07993 * 120.00009 * 0.02562 * 25 24 4 47 47 H 1.08005 * 119.99931 * 180.27280 * 26 25 24 48 48 H 1.07997 * 120.00199 * 179.83721 * 27 26 25 49 49 H 1.08004 * 119.99489 * 180.02562 * 28 27 26 50 50 H 1.08004 * 120.00084 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 1.6312 -0.3310 2.0682 6 6 1.5328 -2.1968 1.0369 7 8 1.2683 -2.6738 -0.0463 8 7 1.4130 -2.9462 2.1507 9 6 1.7321 -2.3698 3.4593 10 6 0.9638 -4.3371 2.0528 11 6 2.1762 -5.2534 1.8754 12 1 2.7582 -4.9231 1.0150 13 8 2.9891 -5.2004 3.0493 14 6 1.7009 -6.6899 1.6485 15 7 2.8618 -7.5671 1.4780 16 6 2.6815 -8.9079 1.2663 17 1 1.6834 -9.3180 1.2205 18 6 3.7816 -9.7401 1.1105 19 7 4.9980 -9.2403 1.1658 20 14 3.5357 -11.5691 0.8210 21 1 2.0829 -11.8760 0.7998 22 1 4.1406 -11.9499 -0.4807 23 1 4.1881 -12.3352 1.9131 24 6 3.5017 -0.7226 1.1185 25 6 4.1852 -0.9627 -0.0589 26 6 5.5667 -0.9186 -0.0774 27 6 6.2650 -0.6433 1.0835 28 6 5.5817 -0.4085 2.2619 29 6 4.2000 -0.4482 2.2794 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 3.0851 1.3423 -0.0106 34 1 1.6375 1.8979 -0.8847 35 1 1.6545 1.8914 0.8952 36 1 2.7864 -2.5347 3.6815 37 1 1.5270 -1.2994 3.4446 38 1 1.1204 -2.8465 4.2252 39 1 0.2985 -4.4447 1.1961 40 1 0.4310 -4.6118 2.9632 41 1 2.5348 -5.4813 3.8554 42 1 1.0807 -6.7303 0.7530 43 1 1.1188 -7.0201 2.5088 44 1 3.7582 -7.1989 1.5195 45 1 5.7667 -9.8217 1.0566 46 1 3.6397 -1.1810 -0.9650 47 1 6.1006 -1.1018 -0.9982 48 1 7.3444 -0.6115 1.0697 49 1 6.1273 -0.1930 3.1688 50 1 3.6661 -0.2643 3.2001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332608905.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:27 Heat of formation + Delta-G solvation = -48.439513 kcal Electronic energy + Delta-G solvation = -30198.122709 eV Core-core repulsion = 26225.401575 eV Total energy + Delta-G solvation = -3972.721134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.73428 -39.96980 -38.89476 -37.62905 -36.42103 -35.81336 -33.30188 -32.89701 -31.79988 -31.07957 -28.95011 -28.17851 -27.90394 -26.60893 -24.75046 -23.80113 -23.27667 -22.81397 -22.21540 -20.05046 -19.26005 -18.44184 -18.00260 -17.81173 -17.11515 -16.81998 -16.57661 -16.41070 -16.28315 -15.98271 -15.42572 -15.29603 -15.24092 -15.02786 -14.83927 -14.34602 -14.22908 -14.03095 -13.80493 -13.72275 -13.57968 -13.43423 -13.21259 -13.16359 -13.01705 -12.87646 -12.80200 -12.55842 -12.53721 -12.16414 -12.02301 -11.93308 -11.89121 -11.83852 -11.25810 -11.01431 -10.90668 -9.81454 -9.63935 -9.56509 -9.32057 -9.03909 -7.96116 -5.26779 0.32985 0.50870 1.45050 1.47368 1.56505 1.57548 1.87635 2.54068 2.76808 3.01181 3.34854 3.47434 3.51237 3.63237 3.75536 3.84465 4.01425 4.10897 4.15862 4.17204 4.25981 4.29508 4.33156 4.39768 4.46000 4.53932 4.59253 4.63268 4.65027 4.67056 4.70888 4.76744 4.89121 4.97164 4.97938 5.01290 5.04096 5.15519 5.19201 5.44438 5.48481 5.52647 5.57897 5.63148 5.87461 6.02086 6.09305 6.24203 6.37213 6.89678 7.16042 7.30409 8.05873 8.29446 9.27586 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.002971 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.244887 B = 9423.055839 C =10273.809865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.030 3.970 4 C 0.121 3.879 5 H 0.094 0.906 6 C 0.513 3.487 7 O -0.563 6.563 8 N -0.603 5.603 9 C 0.070 3.930 10 C 0.098 3.902 11 C 0.108 3.892 12 H 0.055 0.945 13 O -0.559 6.559 14 C 0.124 3.876 15 N -0.741 5.741 16 C -0.248 4.248 17 H 0.078 0.922 18 C -0.079 4.079 19 N -0.970 5.970 20 Si 0.978 3.022 21 H -0.263 1.263 22 H -0.295 1.295 23 H -0.290 1.290 24 C -0.092 4.092 25 C -0.104 4.104 26 C -0.139 4.139 27 C -0.121 4.121 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.384 0.616 42 H 0.020 0.980 43 H 0.043 0.957 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.106 0.894 47 H 0.127 0.873 48 H 0.140 0.860 49 H 0.150 0.850 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.195 27.293 7.573 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.117 4.117 4 C 0.009 3.991 5 H 0.112 0.888 6 C 0.301 3.699 7 O -0.441 6.441 8 N -0.335 5.335 9 C -0.072 4.072 10 C -0.026 4.026 11 C 0.047 3.953 12 H 0.073 0.927 13 O -0.366 6.366 14 C -0.003 4.003 15 N -0.384 5.384 16 C -0.380 4.380 17 H 0.096 0.904 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.222 1.222 23 H -0.217 1.217 24 C -0.093 4.093 25 C -0.122 4.122 26 C -0.157 4.157 27 C -0.139 4.139 28 C -0.141 4.141 29 C -0.125 4.125 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.138 0.862 41 H 0.232 0.768 42 H 0.038 0.962 43 H 0.061 0.939 44 H 0.205 0.795 45 H 0.060 0.940 46 H 0.124 0.876 47 H 0.145 0.855 48 H 0.158 0.842 49 H 0.168 0.832 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.896 26.896 6.136 28.436 hybrid contribution -0.099 -1.101 0.278 1.139 sum -6.995 25.795 6.415 27.486 Atomic orbital electron populations 1.22402 0.85960 1.01777 1.01976 1.61595 1.08952 1.14872 1.41711 1.22416 1.00853 0.86644 1.01830 1.20478 0.92573 0.90881 0.95129 0.88827 1.20814 0.76783 0.88627 0.83697 1.90699 1.50571 1.74086 1.28740 1.47801 1.66152 1.11577 1.08002 1.22213 1.02318 0.99804 0.82835 1.22066 0.95360 0.80283 1.04888 1.22119 0.92222 0.93115 0.87858 0.92719 1.86592 1.42637 1.89481 1.17887 1.21428 0.90247 0.90104 0.98555 1.42467 1.04284 1.04678 1.86989 1.19714 0.92986 0.85271 1.40006 0.90389 1.25673 0.94970 1.02912 1.03509 1.69873 0.97768 1.35776 1.58669 0.85003 0.77866 0.79677 0.76765 1.18755 1.22182 1.21654 1.19368 0.92604 1.02691 0.94591 1.21049 0.94585 0.98414 0.98195 1.21385 0.94038 1.00644 0.99613 1.21514 1.01094 0.98473 0.92773 1.21452 0.94266 0.99596 0.98809 1.21295 0.94796 0.99105 0.97342 0.93729 0.90056 0.93125 0.91630 0.90222 0.93898 0.92139 0.89340 0.88410 0.90358 0.86196 0.76785 0.96163 0.93913 0.79484 0.94009 0.87616 0.85550 0.84205 0.83221 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.28 127.69 1.19 1.69 16 2 N -0.55 -11.91 4.14 -932.22 -3.86 -15.77 16 3 C 0.03 0.48 9.23 127.69 1.18 1.66 16 4 C 0.12 2.59 1.42 43.42 0.06 2.66 16 5 H 0.09 1.43 5.79 -2.39 -0.01 1.42 16 6 C 0.51 14.52 5.73 87.66 0.50 15.02 16 7 O -0.56 -21.27 15.15 -3.04 -0.05 -21.32 16 8 N -0.60 -14.15 2.84 -846.75 -2.40 -16.55 16 9 C 0.07 1.00 9.47 127.77 1.21 2.21 16 10 C 0.10 2.53 5.11 86.38 0.44 2.97 16 11 C 0.11 3.78 3.30 30.60 0.10 3.88 16 12 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 13 O -0.56 -18.71 12.64 -148.98 -1.88 -20.59 16 14 C 0.12 5.14 5.92 86.38 0.51 5.66 16 15 N -0.74 -40.34 5.49 -343.45 -1.89 -42.22 16 16 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 17 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 18 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 19 N -0.97 -62.42 13.06 21.65 0.28 -62.14 16 20 Si 0.98 47.63 29.55 68.60 2.03 49.66 16 21 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 C -0.09 -2.08 3.48 -19.87 -0.07 -2.15 16 25 C -0.10 -2.82 8.40 22.27 0.19 -2.63 16 26 C -0.14 -3.36 10.05 22.27 0.22 -3.14 16 27 C -0.12 -2.44 10.05 22.27 0.22 -2.22 16 28 C -0.12 -2.17 10.05 22.27 0.22 -1.95 16 29 C -0.11 -1.90 9.29 22.27 0.21 -1.69 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.05 1.23 6.33 -2.39 -0.02 1.22 16 33 H 0.06 1.18 6.24 -2.38 -0.01 1.16 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 1.00 8.07 -2.39 -0.02 0.98 16 37 H 0.09 0.83 5.79 -2.39 -0.01 0.81 16 38 H 0.10 0.92 7.89 -2.39 -0.02 0.90 16 39 H 0.08 2.29 7.42 -2.39 -0.02 2.28 16 40 H 0.12 2.15 7.89 -2.39 -0.02 2.13 16 41 H 0.38 9.54 9.05 -74.06 -0.67 8.87 16 42 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.37 22.32 7.54 -92.71 -0.70 21.62 16 45 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.11 3.35 7.93 -2.91 -0.02 3.32 16 47 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 48 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 49 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 50 H 0.15 1.65 7.82 -2.91 -0.02 1.63 16 Total: -1.00 -81.75 405.54 -0.70 -82.45 By element: Atomic # 1 Polarization: 42.85 SS G_CDS: -0.43 Total: 42.43 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 7.49 Total: 4.06 kcal Atomic # 7 Polarization: -128.82 SS G_CDS: -7.87 Total: -136.69 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.93 Total: -41.91 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -81.75 -0.70 -82.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332608905.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.013 kcal (2) G-P(sol) polarization free energy of solvation -81.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds