Wall clock time and date at job start Tue Mar 31 2020 18:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46502 * 119.99852 * 2 1 4 4 C 1.39046 * 120.00481 * 180.02562 * 2 1 3 5 5 C 1.39215 * 119.93024 * 3.77945 * 4 2 1 6 6 C 1.37609 * 120.07305 * 179.97438 * 5 4 2 7 7 C 1.39798 * 119.92775 * 0.02669 * 6 5 4 8 8 C 1.47524 * 120.06693 * 179.97438 * 7 6 5 9 9 O 1.21592 * 119.99860 * 21.09327 * 8 7 6 10 10 N 1.34776 * 120.00047 * 201.08644 * 8 7 6 11 11 C 1.46496 * 119.99752 * 5.19077 * 10 8 7 12 12 C 1.46497 * 120.00196 * 185.19476 * 10 8 7 13 13 C 1.52994 * 109.47310 * 270.00164 * 12 10 8 14 14 H 1.09001 * 109.47183 * 305.00105 * 13 12 10 15 15 O 1.42899 * 109.47099 * 64.99455 * 13 12 10 16 16 C 1.52991 * 109.47616 * 184.99914 * 13 12 10 17 17 N 1.46500 * 109.47666 * 179.97438 * 16 13 12 18 18 C 1.46504 * 119.99972 * 269.99946 * 17 16 13 19 19 C 1.36933 * 120.00280 * 90.00067 * 17 16 13 20 20 H 1.08006 * 119.99600 * 330.44278 * 19 17 16 21 21 C 1.38807 * 120.00561 * 150.17194 * 19 17 16 22 22 N 1.31611 * 120.00314 * 166.23241 * 21 19 17 23 23 Si 1.86807 * 119.99611 * 346.23016 * 21 19 17 24 24 H 1.48502 * 109.46938 * 84.12413 * 23 21 19 25 25 H 1.48499 * 109.47116 * 204.12286 * 23 21 19 26 26 H 1.48496 * 109.47295 * 324.12307 * 23 21 19 27 27 C 1.39793 * 119.86445 * 0.25157 * 7 6 5 28 28 C 1.37609 * 119.92429 * 359.46838 * 27 7 6 29 29 H 1.08998 * 109.47245 * 269.99544 * 1 2 3 30 30 H 1.08994 * 109.47676 * 30.00173 * 1 2 3 31 31 H 1.09004 * 109.47080 * 150.00360 * 1 2 3 32 32 H 1.09003 * 109.47352 * 184.97550 * 3 2 1 33 33 H 1.09005 * 109.47216 * 304.97394 * 3 2 1 34 34 H 1.09001 * 109.47115 * 64.97454 * 3 2 1 35 35 H 1.08007 * 119.96818 * 0.03004 * 5 4 2 36 36 H 1.07997 * 120.03845 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47475 * 265.58014 * 11 10 8 38 38 H 1.08997 * 109.47536 * 25.58609 * 11 10 8 39 39 H 1.09001 * 109.46975 * 145.58224 * 11 10 8 40 40 H 1.08996 * 109.47636 * 149.99883 * 12 10 8 41 41 H 1.09000 * 109.47123 * 30.00108 * 12 10 8 42 42 H 0.96703 * 113.99840 * 60.00809 * 15 13 12 43 43 H 1.09000 * 109.47333 * 59.99381 * 16 13 12 44 44 H 1.08997 * 109.47448 * 300.00187 * 16 13 12 45 45 H 1.08997 * 109.47349 * 273.27115 * 18 17 16 46 46 H 1.09006 * 109.46842 * 33.27021 * 18 17 16 47 47 H 1.08996 * 109.47054 * 153.26846 * 18 17 16 48 48 H 0.97012 * 120.00107 * 179.97438 * 22 21 19 49 49 H 1.07998 * 120.03790 * 179.74389 * 27 7 6 50 50 H 1.08011 * 119.96150 * 180.25206 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1603 -1.2041 -0.0005 5 6 1.4651 -2.4076 -0.0806 6 6 2.1503 -3.6010 -0.0819 7 6 3.5460 -3.6039 -0.0021 8 6 4.2836 -4.8815 -0.0027 9 8 3.7603 -5.8855 -0.4461 10 7 5.5377 -4.9358 0.4881 11 6 6.1266 -3.7554 1.1252 12 6 6.3118 -6.1752 0.3844 13 6 6.0635 -7.0369 1.6240 14 1 6.2878 -6.4580 2.5199 15 8 4.6949 -7.4472 1.6524 16 6 6.9652 -8.2719 1.5758 17 7 6.7278 -9.0967 2.7630 18 6 7.5134 -8.8732 3.9793 19 6 5.7717 -10.0766 2.7360 20 1 4.9040 -9.9670 2.1023 21 6 5.9204 -11.2133 3.5186 22 7 4.8984 -12.0208 3.7071 23 14 7.5712 -11.5968 4.3044 24 1 7.6962 -10.8510 5.5825 25 1 7.6659 -13.0546 4.5707 26 1 8.6637 -11.1896 3.3848 27 6 4.2409 -2.3940 0.0840 28 6 3.5502 -1.2038 0.0790 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 3.2657 1.0716 -0.0891 33 1 1.8689 1.8780 -0.8421 34 1 2.0026 1.8008 0.9312 35 1 0.3868 -2.4047 -0.1427 36 1 1.6105 -4.5343 -0.1444 37 1 6.7073 -3.1976 0.3904 38 1 5.3327 -3.1207 1.5187 39 1 6.7782 -4.0697 1.9405 40 1 7.3730 -5.9361 0.3149 41 1 6.0037 -6.7227 -0.5063 42 1 4.4244 -7.9682 0.8840 43 1 8.0091 -7.9589 1.5540 44 1 6.7409 -8.8508 0.6799 45 1 8.4375 -9.4486 3.9258 46 1 7.7502 -7.8129 4.0691 47 1 6.9368 -9.1915 4.8478 48 1 5.0025 -12.8155 4.2538 49 1 5.3188 -2.3932 0.1500 50 1 4.0867 -0.2685 0.1415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332679340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:17 Heat of formation + Delta-G solvation = 20.514114 kcal Electronic energy + Delta-G solvation = -29286.575765 eV Core-core repulsion = 25316.844684 eV Total energy + Delta-G solvation = -3969.731081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.53542 -39.18553 -37.28959 -36.24879 -35.45214 -34.52291 -31.68585 -31.44908 -30.80584 -29.51254 -28.60773 -27.27566 -26.52546 -25.77238 -24.84179 -22.59921 -22.27178 -21.24835 -20.41039 -19.67659 -17.70446 -17.16186 -16.79235 -16.39845 -16.01018 -15.54160 -15.51632 -15.34052 -15.02555 -14.85491 -14.35922 -14.09508 -13.98001 -13.86805 -13.70847 -13.41584 -13.11739 -13.00783 -12.73396 -12.67738 -12.49809 -12.43663 -12.32302 -12.28611 -12.03890 -11.69085 -11.42987 -11.13458 -10.82435 -10.48962 -10.47980 -10.15344 -10.08715 -9.92195 -9.63252 -9.54068 -9.40070 -9.11954 -8.61915 -8.28575 -7.59654 -6.74733 -5.79012 -3.21071 1.01262 1.27627 2.71036 2.97996 3.13864 3.41633 3.53785 3.57367 3.86860 4.43243 4.48905 4.63995 4.64456 4.74288 4.85676 4.88947 4.95250 4.99701 5.12168 5.12570 5.19363 5.21933 5.24227 5.30406 5.36381 5.41789 5.48885 5.50414 5.54448 5.67476 5.78716 5.85968 5.95709 5.96405 6.03774 6.12846 6.28337 6.34040 6.36477 6.52223 6.58212 6.69894 6.73377 6.80143 6.83071 7.11701 7.53493 8.12628 8.42543 8.50634 8.60663 9.09521 9.86297 10.18565 11.37457 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024769 B = 0.002246 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.173227 B =12461.077175 C =12910.702542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.634 5.634 3 C 0.087 3.913 4 C 0.235 3.765 5 C -0.210 4.210 6 C -0.007 4.007 7 C -0.190 4.190 8 C 0.566 3.434 9 O -0.531 6.531 10 N -0.608 5.608 11 C 0.065 3.935 12 C 0.084 3.916 13 C 0.074 3.926 14 H 0.082 0.918 15 O -0.535 6.535 16 C 0.124 3.876 17 N -0.603 5.603 18 C 0.098 3.902 19 C -0.247 4.247 20 H 0.089 0.911 21 C 0.018 3.982 22 N -0.916 5.916 23 Si 0.900 3.100 24 H -0.290 1.290 25 H -0.308 1.308 26 H -0.278 1.278 27 C -0.061 4.061 28 C -0.215 4.215 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.371 0.629 43 H 0.043 0.957 44 H 0.060 0.940 45 H 0.010 0.990 46 H 0.029 0.971 47 H 0.058 0.942 48 H 0.260 0.740 49 H 0.149 0.851 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 30.167 -9.221 31.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.344 5.344 3 C -0.056 4.056 4 C 0.132 3.868 5 C -0.233 4.233 6 C -0.027 4.027 7 C -0.195 4.195 8 C 0.356 3.644 9 O -0.408 6.408 10 N -0.341 5.341 11 C -0.078 4.078 12 C -0.040 4.040 13 C 0.010 3.990 14 H 0.100 0.900 15 O -0.339 6.339 16 C -0.005 4.005 17 N -0.326 5.326 18 C -0.047 4.047 19 C -0.376 4.376 20 H 0.107 0.893 21 C -0.180 4.180 22 N -0.560 5.560 23 Si 0.732 3.268 24 H -0.217 1.217 25 H -0.237 1.237 26 H -0.205 1.205 27 C -0.080 4.080 28 C -0.237 4.237 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.218 0.782 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.028 0.972 46 H 0.047 0.953 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.167 0.833 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.310 29.968 -8.802 31.319 hybrid contribution 0.987 -0.358 0.186 1.066 sum -1.323 29.610 -8.616 30.866 Atomic orbital electron populations 1.21681 0.79297 1.02857 1.01517 1.46256 1.05308 1.03353 1.79485 1.21748 0.97859 0.84852 1.01155 1.18042 0.91407 0.85738 0.91660 1.20635 0.99926 0.90746 1.11953 1.21023 0.92693 0.97967 0.91013 1.19681 0.94280 0.92922 1.12603 1.18132 0.80686 0.88100 0.77509 1.90748 1.66857 1.36121 1.47045 1.47539 1.14772 1.12660 1.59103 1.22423 0.99365 0.88564 0.97433 1.22351 0.95122 0.85509 1.01000 1.22970 0.85055 0.95101 0.95876 0.89980 1.86579 1.24736 1.74330 1.48264 1.21418 0.95872 0.91894 0.91267 1.43943 1.42809 1.38639 1.07236 1.21473 0.94940 0.97606 0.90652 1.18949 0.98545 0.94322 1.25765 0.89343 1.25354 0.97065 0.96116 0.99484 1.69794 1.29396 1.15388 1.41408 0.86853 0.85798 0.75226 0.78932 1.21745 1.23707 1.20465 1.22030 1.01271 0.91089 0.93601 1.20640 0.92018 0.98540 1.12517 0.93079 0.91482 0.90941 0.90158 0.92490 0.92822 0.85496 0.84797 0.92424 0.89390 0.91347 0.90307 0.89706 0.78193 0.93851 0.92186 0.97201 0.95258 0.92325 0.92974 0.83341 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.30 59.84 0.62 1.10 16 2 N -0.63 -4.66 3.39 -187.56 -0.64 -5.29 16 3 C 0.09 0.42 10.60 59.85 0.63 1.05 16 4 C 0.23 2.24 6.54 -83.86 -0.55 1.69 16 5 C -0.21 -2.20 9.21 -39.45 -0.36 -2.56 16 6 C -0.01 -0.09 9.58 -39.23 -0.38 -0.47 16 7 C -0.19 -2.48 5.59 -104.95 -0.59 -3.07 16 8 C 0.57 8.87 7.21 -12.48 -0.09 8.78 16 9 O -0.53 -10.16 14.80 -7.83 -0.12 -10.28 16 10 N -0.61 -8.14 2.86 -182.82 -0.52 -8.67 16 11 C 0.06 0.60 8.66 59.84 0.52 1.12 16 12 C 0.08 1.17 5.12 -4.05 -0.02 1.14 16 13 C 0.07 1.30 3.48 -26.74 -0.09 1.21 16 14 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 15 O -0.53 -11.55 10.97 -48.35 -0.53 -12.08 16 16 C 0.12 2.40 5.40 -4.05 -0.02 2.37 16 17 N -0.60 -14.78 2.63 -181.12 -0.48 -15.25 16 18 C 0.10 2.23 8.35 59.85 0.50 2.73 16 19 C -0.25 -7.17 9.54 -15.06 -0.14 -7.31 16 20 H 0.09 2.76 7.55 -52.48 -0.40 2.36 16 21 C 0.02 0.53 5.33 -17.44 -0.09 0.44 16 22 N -0.92 -29.37 13.97 55.49 0.78 -28.60 16 23 Si 0.90 23.61 23.94 -169.99 -4.07 19.54 16 24 H -0.29 -7.34 6.52 56.52 0.37 -6.97 16 25 H -0.31 -8.22 7.11 56.52 0.40 -7.82 16 26 H -0.28 -7.14 6.49 56.52 0.37 -6.77 16 27 C -0.06 -0.61 7.57 -39.23 -0.30 -0.91 16 28 C -0.22 -1.91 9.26 -39.45 -0.37 -2.28 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 31 H 0.07 0.39 6.03 -51.93 -0.31 0.07 16 32 H 0.08 0.34 5.32 -51.93 -0.28 0.07 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.13 1.09 6.03 -52.48 -0.32 0.77 16 36 H 0.13 1.79 7.79 -52.49 -0.41 1.38 16 37 H 0.06 0.39 7.13 -51.93 -0.37 0.02 16 38 H 0.09 0.79 5.02 -51.93 -0.26 0.53 16 39 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 40 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 41 H 0.08 1.27 7.50 -51.93 -0.39 0.88 16 42 H 0.37 7.82 8.60 45.56 0.39 8.21 16 43 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 44 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 45 H 0.01 0.23 5.18 -51.93 -0.27 -0.04 16 46 H 0.03 0.56 8.10 -51.93 -0.42 0.14 16 47 H 0.06 1.44 6.03 -51.93 -0.31 1.12 16 48 H 0.26 7.94 8.31 -40.81 -0.34 7.60 16 49 H 0.15 1.15 4.02 -52.49 -0.21 0.94 16 50 H 0.13 0.81 5.76 -52.48 -0.30 0.51 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -37.40 385.70 -7.34 -44.74 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.85 Total: 5.04 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -0.73 Total: 5.03 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.86 Total: -57.81 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.65 Total: -22.36 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.07 Total: 19.54 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.40 -7.34 -44.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332679340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.257 kcal (2) G-P(sol) polarization free energy of solvation -37.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds