Wall clock time and date at job start Tue Mar 31 2020 18:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46502 * 119.99852 * 2 1 4 4 C 1.39046 * 120.00481 * 180.02562 * 2 1 3 5 5 C 1.39215 * 119.93024 * 3.77945 * 4 2 1 6 6 C 1.37609 * 120.07305 * 179.97438 * 5 4 2 7 7 C 1.39798 * 119.92775 * 0.02669 * 6 5 4 8 8 C 1.47524 * 120.06693 * 179.97438 * 7 6 5 9 9 O 1.21592 * 119.99860 * 21.09327 * 8 7 6 10 10 N 1.34776 * 120.00047 * 201.08644 * 8 7 6 11 11 C 1.46496 * 119.99752 * 5.19077 * 10 8 7 12 12 C 1.46497 * 120.00196 * 185.19476 * 10 8 7 13 13 C 1.52994 * 109.47310 * 270.00164 * 12 10 8 14 14 H 1.09001 * 109.47183 * 305.00105 * 13 12 10 15 15 O 1.42899 * 109.47099 * 64.99455 * 13 12 10 16 16 C 1.52991 * 109.47616 * 184.99914 * 13 12 10 17 17 N 1.46500 * 109.47666 * 179.97438 * 16 13 12 18 18 C 1.46504 * 119.99972 * 269.99946 * 17 16 13 19 19 C 1.36933 * 120.00280 * 90.00067 * 17 16 13 20 20 H 1.08006 * 119.99600 * 330.44278 * 19 17 16 21 21 C 1.38807 * 120.00561 * 150.17194 * 19 17 16 22 22 N 1.31611 * 120.00314 * 166.23241 * 21 19 17 23 23 Si 1.86807 * 119.99611 * 346.23016 * 21 19 17 24 24 H 1.48502 * 109.46938 * 84.12413 * 23 21 19 25 25 H 1.48499 * 109.47116 * 204.12286 * 23 21 19 26 26 H 1.48496 * 109.47295 * 324.12307 * 23 21 19 27 27 C 1.39793 * 119.86445 * 0.25157 * 7 6 5 28 28 C 1.37609 * 119.92429 * 359.46838 * 27 7 6 29 29 H 1.08998 * 109.47245 * 269.99544 * 1 2 3 30 30 H 1.08994 * 109.47676 * 30.00173 * 1 2 3 31 31 H 1.09004 * 109.47080 * 150.00360 * 1 2 3 32 32 H 1.09003 * 109.47352 * 184.97550 * 3 2 1 33 33 H 1.09005 * 109.47216 * 304.97394 * 3 2 1 34 34 H 1.09001 * 109.47115 * 64.97454 * 3 2 1 35 35 H 1.08007 * 119.96818 * 0.03004 * 5 4 2 36 36 H 1.07997 * 120.03845 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47475 * 265.58014 * 11 10 8 38 38 H 1.08997 * 109.47536 * 25.58609 * 11 10 8 39 39 H 1.09001 * 109.46975 * 145.58224 * 11 10 8 40 40 H 1.08996 * 109.47636 * 149.99883 * 12 10 8 41 41 H 1.09000 * 109.47123 * 30.00108 * 12 10 8 42 42 H 0.96703 * 113.99840 * 60.00809 * 15 13 12 43 43 H 1.09000 * 109.47333 * 59.99381 * 16 13 12 44 44 H 1.08997 * 109.47448 * 300.00187 * 16 13 12 45 45 H 1.08997 * 109.47349 * 273.27115 * 18 17 16 46 46 H 1.09006 * 109.46842 * 33.27021 * 18 17 16 47 47 H 1.08996 * 109.47054 * 153.26846 * 18 17 16 48 48 H 0.97012 * 120.00107 * 179.97438 * 22 21 19 49 49 H 1.07998 * 120.03790 * 179.74389 * 27 7 6 50 50 H 1.08011 * 119.96150 * 180.25206 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1603 -1.2041 -0.0005 5 6 1.4651 -2.4076 -0.0806 6 6 2.1503 -3.6010 -0.0819 7 6 3.5460 -3.6039 -0.0021 8 6 4.2836 -4.8815 -0.0027 9 8 3.7603 -5.8855 -0.4461 10 7 5.5377 -4.9358 0.4881 11 6 6.1266 -3.7554 1.1252 12 6 6.3118 -6.1752 0.3844 13 6 6.0635 -7.0369 1.6240 14 1 6.2878 -6.4580 2.5199 15 8 4.6949 -7.4472 1.6524 16 6 6.9652 -8.2719 1.5758 17 7 6.7278 -9.0967 2.7630 18 6 7.5134 -8.8732 3.9793 19 6 5.7717 -10.0766 2.7360 20 1 4.9040 -9.9670 2.1023 21 6 5.9204 -11.2133 3.5186 22 7 4.8984 -12.0208 3.7071 23 14 7.5712 -11.5968 4.3044 24 1 7.6962 -10.8510 5.5825 25 1 7.6659 -13.0546 4.5707 26 1 8.6637 -11.1896 3.3848 27 6 4.2409 -2.3940 0.0840 28 6 3.5502 -1.2038 0.0790 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 3.2657 1.0716 -0.0891 33 1 1.8689 1.8780 -0.8421 34 1 2.0026 1.8008 0.9312 35 1 0.3868 -2.4047 -0.1427 36 1 1.6105 -4.5343 -0.1444 37 1 6.7073 -3.1976 0.3904 38 1 5.3327 -3.1207 1.5187 39 1 6.7782 -4.0697 1.9405 40 1 7.3730 -5.9361 0.3149 41 1 6.0037 -6.7227 -0.5063 42 1 4.4244 -7.9682 0.8840 43 1 8.0091 -7.9589 1.5540 44 1 6.7409 -8.8508 0.6799 45 1 8.4375 -9.4486 3.9258 46 1 7.7502 -7.8129 4.0691 47 1 6.9368 -9.1915 4.8478 48 1 5.0025 -12.8155 4.2538 49 1 5.3188 -2.3932 0.1500 50 1 4.0867 -0.2685 0.1415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332679340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:17 Heat of formation + Delta-G solvation = -7.056215 kcal Electronic energy + Delta-G solvation = -29287.771304 eV Core-core repulsion = 25316.844684 eV Total energy + Delta-G solvation = -3970.926620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47246 -40.08371 -38.79298 -37.04334 -36.88433 -36.03577 -33.66887 -32.48309 -31.78765 -30.71017 -29.14531 -28.33397 -27.88997 -27.35049 -25.82616 -23.92458 -23.16839 -22.26672 -21.98668 -20.66913 -18.92340 -18.46544 -17.99914 -17.66792 -17.25979 -17.04325 -16.39585 -16.32385 -16.02439 -15.89538 -15.71173 -15.67791 -15.14275 -14.84342 -14.76739 -14.56183 -14.32543 -14.17606 -14.10875 -13.83385 -13.56512 -13.37294 -13.24982 -13.16592 -13.07993 -12.83637 -12.65302 -12.26595 -12.24061 -12.10092 -12.00671 -11.96586 -11.54269 -11.48963 -11.16244 -10.89867 -10.73359 -10.62594 -9.90891 -9.54503 -8.72827 -8.25388 -8.09190 -5.47852 0.15072 0.49410 1.33206 1.41792 1.51893 1.94551 2.15036 2.20326 2.46135 2.98426 3.15198 3.36255 3.67314 3.77649 3.84041 3.91770 4.05212 4.18089 4.25327 4.27182 4.42738 4.46134 4.48095 4.50831 4.53798 4.55891 4.58088 4.64932 4.67539 4.70982 4.78315 4.78686 4.89699 4.92072 4.92571 4.93977 5.03211 5.11894 5.23409 5.26122 5.37080 5.49873 5.64715 5.78428 5.96072 6.22828 6.27048 6.45339 6.50968 6.90325 7.04264 7.33299 7.68855 8.02427 9.11532 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024769 B = 0.002246 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.173227 B =12461.077175 C =12910.702542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.634 5.634 3 C 0.079 3.921 4 C 0.236 3.764 5 C -0.219 4.219 6 C -0.029 4.029 7 C -0.219 4.219 8 C 0.554 3.446 9 O -0.585 6.585 10 N -0.607 5.607 11 C 0.055 3.945 12 C 0.093 3.907 13 C 0.077 3.923 14 H 0.084 0.916 15 O -0.564 6.564 16 C 0.120 3.880 17 N -0.619 5.619 18 C 0.095 3.905 19 C -0.231 4.231 20 H 0.047 0.953 21 C -0.052 4.052 22 N -0.970 5.970 23 Si 0.970 3.030 24 H -0.273 1.273 25 H -0.318 1.318 26 H -0.262 1.262 27 C -0.050 4.050 28 C -0.213 4.213 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.138 0.862 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.068 0.932 42 H 0.366 0.634 43 H 0.086 0.914 44 H 0.049 0.951 45 H 0.020 0.980 46 H 0.072 0.928 47 H 0.034 0.966 48 H 0.258 0.742 49 H 0.176 0.824 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 34.586 -8.990 35.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.342 5.342 3 C -0.063 4.063 4 C 0.130 3.870 5 C -0.242 4.242 6 C -0.049 4.049 7 C -0.225 4.225 8 C 0.346 3.654 9 O -0.466 6.466 10 N -0.339 5.339 11 C -0.085 4.085 12 C -0.031 4.031 13 C 0.015 3.985 14 H 0.102 0.898 15 O -0.369 6.369 16 C -0.006 4.006 17 N -0.343 5.343 18 C -0.050 4.050 19 C -0.361 4.361 20 H 0.065 0.935 21 C -0.244 4.244 22 N -0.618 5.618 23 Si 0.799 3.201 24 H -0.199 1.199 25 H -0.247 1.247 26 H -0.187 1.187 27 C -0.069 4.069 28 C -0.235 4.235 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.155 0.845 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.141 0.859 41 H 0.086 0.914 42 H 0.213 0.787 43 H 0.104 0.896 44 H 0.067 0.933 45 H 0.037 0.963 46 H 0.090 0.910 47 H 0.053 0.947 48 H 0.067 0.933 49 H 0.192 0.808 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.920 34.507 -8.570 35.568 hybrid contribution -0.121 -1.499 0.072 1.506 sum 0.799 33.008 -8.499 34.094 Atomic orbital electron populations 1.21838 0.78464 1.03770 1.01978 1.46567 1.06168 1.03448 1.78030 1.21973 0.98169 0.83762 1.02347 1.18228 0.92097 0.86156 0.90540 1.20714 1.00558 0.90597 1.12283 1.20966 0.93196 0.97969 0.92809 1.19619 0.94223 0.93035 1.15602 1.18699 0.81342 0.88454 0.76929 1.90709 1.68233 1.38061 1.49618 1.47643 1.14129 1.13572 1.58516 1.22749 0.99818 0.87337 0.98639 1.22175 0.97435 0.85389 0.98052 1.23003 0.82736 0.94902 0.97896 0.89778 1.86539 1.27446 1.74511 1.48401 1.21641 0.98537 0.91522 0.88912 1.44091 1.42191 1.38343 1.09697 1.21532 0.94224 1.00437 0.88770 1.18826 0.98207 0.95358 1.23748 0.93491 1.26114 1.00770 0.96296 1.01257 1.69968 1.31824 1.16364 1.43598 0.85715 0.81118 0.74405 0.78822 1.19912 1.24722 1.18671 1.22259 1.02454 0.89979 0.92163 1.21003 0.91814 0.99428 1.11252 0.92818 0.89382 0.91297 0.89303 0.91070 0.91776 0.84480 0.87376 0.88754 0.89150 0.90131 0.85932 0.91385 0.78735 0.89558 0.93289 0.96265 0.90981 0.94731 0.93297 0.80751 0.82293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.30 127.77 1.32 2.05 16 2 N -0.63 -7.64 3.39 -747.31 -2.53 -10.17 16 3 C 0.08 0.48 10.60 127.77 1.35 1.83 16 4 C 0.24 4.06 6.54 38.47 0.25 4.31 16 5 C -0.22 -4.65 9.21 22.36 0.21 -4.45 16 6 C -0.03 -0.81 9.58 22.50 0.22 -0.59 16 7 C -0.22 -5.84 5.59 -20.08 -0.11 -5.95 16 8 C 0.55 17.93 7.21 86.69 0.62 18.56 16 9 O -0.58 -24.26 14.80 8.54 0.13 -24.14 16 10 N -0.61 -15.44 2.86 -850.59 -2.43 -17.87 16 11 C 0.06 0.82 8.66 127.77 1.11 1.93 16 12 C 0.09 2.45 5.12 86.38 0.44 2.89 16 13 C 0.08 2.66 3.48 30.59 0.11 2.76 16 14 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 15 O -0.56 -25.61 10.97 -136.44 -1.50 -27.11 16 16 C 0.12 4.46 5.40 86.38 0.47 4.93 16 17 N -0.62 -29.74 2.63 -726.95 -1.91 -31.65 16 18 C 0.09 4.01 8.35 127.77 1.07 5.08 16 19 C -0.23 -13.80 9.54 84.03 0.80 -13.00 16 20 H 0.05 3.14 7.55 -2.91 -0.02 3.11 16 21 C -0.05 -3.18 5.33 84.86 0.45 -2.73 16 22 N -0.97 -64.87 13.97 21.65 0.30 -64.57 16 23 Si 0.97 48.99 23.94 68.60 1.64 50.63 16 24 H -0.27 -12.91 6.52 99.48 0.65 -12.27 16 25 H -0.32 -16.40 7.11 99.48 0.71 -15.69 16 26 H -0.26 -12.36 6.49 99.48 0.65 -11.71 16 27 C -0.05 -0.88 7.57 22.50 0.17 -0.71 16 28 C -0.21 -3.15 9.26 22.36 0.21 -2.94 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.09 0.42 8.07 -2.39 -0.02 0.41 16 31 H 0.07 0.67 6.03 -2.39 -0.01 0.65 16 32 H 0.09 0.37 5.32 -2.39 -0.01 0.36 16 33 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 34 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.14 2.44 6.03 -2.91 -0.02 2.43 16 36 H 0.11 3.36 7.79 -2.91 -0.02 3.34 16 37 H 0.09 0.76 7.13 -2.39 -0.02 0.74 16 38 H 0.09 1.33 5.02 -2.39 -0.01 1.32 16 39 H 0.08 1.04 8.11 -2.39 -0.02 1.02 16 40 H 0.12 2.16 8.07 -2.39 -0.02 2.14 16 41 H 0.07 2.05 7.50 -2.39 -0.02 2.03 16 42 H 0.37 16.91 8.60 -74.06 -0.64 16.27 16 43 H 0.09 2.51 8.07 -2.39 -0.02 2.49 16 44 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16 45 H 0.02 0.80 5.18 -2.39 -0.01 0.79 16 46 H 0.07 2.44 8.10 -2.38 -0.02 2.42 16 47 H 0.03 1.62 6.03 -2.39 -0.01 1.61 16 48 H 0.26 16.41 8.31 -92.70 -0.77 15.64 16 49 H 0.18 2.01 4.02 -2.91 -0.01 2.00 16 50 H 0.16 1.27 5.76 -2.90 -0.02 1.26 16 Total: -1.00 -87.44 385.70 2.58 -84.86 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.21 Total: 26.05 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 8.68 Total: 13.96 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -6.57 Total: -124.26 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -1.37 Total: -51.24 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 1.64 Total: 50.63 kcal Total: -87.44 2.58 -84.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332679340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.802 kcal (2) G-P(sol) polarization free energy of solvation -87.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds