Wall clock time and date at job start Tue Mar 31 2020 18:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99928 * 2 1 4 4 C 1.39046 * 120.00157 * 180.02562 * 2 1 3 5 5 C 1.39219 * 119.93093 * 5.34396 * 4 2 1 6 6 C 1.37606 * 120.07135 * 180.02562 * 5 4 2 7 7 C 1.39802 * 119.92756 * 359.97438 * 6 5 4 8 8 C 1.47525 * 120.06468 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99880 * 328.71545 * 8 7 6 10 10 N 1.34771 * 119.99603 * 148.72391 * 8 7 6 11 11 C 1.46501 * 120.00193 * 3.50656 * 10 8 7 12 12 C 1.46500 * 119.99835 * 183.51422 * 10 8 7 13 13 C 1.53003 * 109.46995 * 89.99741 * 12 10 8 14 14 H 1.08997 * 109.47715 * 59.99817 * 13 12 10 15 15 O 1.42899 * 109.46948 * 299.99775 * 13 12 10 16 16 C 1.53006 * 109.47005 * 180.02562 * 13 12 10 17 17 N 1.46503 * 109.47131 * 184.99987 * 16 13 12 18 18 C 1.46503 * 119.99970 * 89.99502 * 17 16 13 19 19 C 1.36931 * 119.99850 * 269.99897 * 17 16 13 20 20 H 1.08001 * 120.00135 * 29.91089 * 19 17 16 21 21 C 1.38814 * 120.00005 * 209.91077 * 19 17 16 22 22 N 1.31616 * 119.99994 * 7.59200 * 21 19 17 23 23 Si 1.86799 * 120.00110 * 187.59440 * 21 19 17 24 24 H 1.48508 * 109.47164 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47519 * 119.99723 * 23 21 19 26 26 H 1.48501 * 109.47371 * 240.00302 * 23 21 19 27 27 C 1.39786 * 119.86381 * 0.28481 * 7 6 5 28 28 C 1.37611 * 119.92962 * 359.43756 * 27 7 6 29 29 H 1.08996 * 109.47272 * 270.00013 * 1 2 3 30 30 H 1.09006 * 109.47094 * 29.99788 * 1 2 3 31 31 H 1.08997 * 109.46788 * 149.99511 * 1 2 3 32 32 H 1.09004 * 109.46948 * 184.69654 * 3 2 1 33 33 H 1.09006 * 109.47347 * 304.69449 * 3 2 1 34 34 H 1.09000 * 109.47077 * 64.69741 * 3 2 1 35 35 H 1.08003 * 119.96603 * 0.04768 * 5 4 2 36 36 H 1.07991 * 120.03686 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.46776 * 95.12565 * 11 10 8 38 38 H 1.09001 * 109.47626 * 215.12139 * 11 10 8 39 39 H 1.08995 * 109.47264 * 335.12594 * 11 10 8 40 40 H 1.09002 * 109.47372 * 209.99204 * 12 10 8 41 41 H 1.08992 * 109.47134 * 329.99608 * 12 10 8 42 42 H 0.96692 * 114.00567 * 300.00047 * 15 13 12 43 43 H 1.08994 * 109.46818 * 304.99592 * 16 13 12 44 44 H 1.08996 * 109.47241 * 64.99573 * 16 13 12 45 45 H 1.08997 * 109.46528 * 85.45601 * 18 17 16 46 46 H 1.08997 * 109.47078 * 205.45127 * 18 17 16 47 47 H 1.08998 * 109.47472 * 325.45380 * 18 17 16 48 48 H 0.97000 * 120.00082 * 180.02562 * 22 21 19 49 49 H 1.07997 * 120.03886 * 179.69446 * 27 7 6 50 50 H 1.08000 * 119.96768 * 180.25726 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1603 -1.2042 -0.0005 5 6 1.4673 -2.4063 -0.1134 6 6 2.1524 -3.5997 -0.1138 7 6 3.5459 -3.6040 -0.0011 8 6 4.2835 -4.8816 -0.0017 9 8 3.7673 -5.8818 0.4585 10 7 5.5294 -4.9401 -0.5121 11 6 6.1807 -3.7204 -0.9961 12 6 6.2323 -6.2235 -0.5832 13 6 5.9278 -6.8983 -1.9222 14 1 6.2613 -6.2558 -2.7371 15 8 4.5205 -7.1191 -2.0351 16 6 6.6615 -8.2389 -1.9961 17 7 6.4671 -8.8295 -3.3227 18 6 7.4114 -8.5317 -4.4026 19 6 5.4029 -9.6596 -3.5533 20 1 4.4845 -9.5265 -3.0008 21 6 5.5043 -10.6724 -4.4973 22 7 6.6645 -10.9315 -5.0623 23 14 3.9944 -11.6674 -4.9656 24 1 2.8227 -11.1826 -4.1926 25 1 3.7289 -11.5103 -6.4182 26 1 4.2310 -13.1007 -4.6578 27 6 4.2383 -2.3955 0.1176 28 6 3.5479 -1.2052 0.1115 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 3.2662 1.0713 -0.0841 33 1 1.8726 1.8759 -0.8450 34 1 1.9988 1.8030 0.9291 35 1 0.3908 -2.4023 -0.2012 36 1 1.6143 -4.5319 -0.2010 37 1 6.8064 -3.3047 -0.2062 38 1 6.7988 -3.9575 -1.8621 39 1 5.4219 -2.9914 -1.2800 40 1 7.3058 -6.0551 -0.4971 41 1 5.8989 -6.8660 0.2316 42 1 4.1541 -7.6840 -1.3411 43 1 7.7256 -8.0808 -1.8212 44 1 6.2646 -8.9127 -1.2368 45 1 8.2574 -9.2165 -4.3444 46 1 6.9127 -8.6511 -5.3644 47 1 7.7665 -7.5061 -4.3023 48 1 6.7353 -11.6389 -5.7222 49 1 5.3144 -2.3958 0.2098 50 1 4.0827 -0.2709 0.1990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332679341.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:21 Heat of formation + Delta-G solvation = 7.304622 kcal Electronic energy + Delta-G solvation = -29303.620951 eV Core-core repulsion = 25333.317064 eV Total energy + Delta-G solvation = -3970.303887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.50623 -39.17455 -37.18300 -36.22796 -35.29394 -34.39525 -31.64875 -31.27675 -30.69981 -29.22798 -28.55748 -27.03135 -26.21480 -25.68804 -24.73388 -22.55311 -22.24159 -21.22953 -20.35741 -19.62159 -17.71121 -17.14467 -16.73140 -16.32952 -15.99345 -15.54681 -15.42111 -15.14606 -14.89005 -14.76405 -14.40612 -14.05663 -13.92343 -13.74665 -13.43215 -13.14955 -13.06631 -12.96910 -12.73926 -12.66977 -12.56129 -12.43311 -12.29872 -11.83403 -11.73192 -11.42728 -10.97836 -10.86384 -10.79352 -10.53705 -10.47715 -10.29338 -10.08833 -9.85678 -9.81265 -9.65091 -9.47687 -9.10452 -8.49062 -8.25584 -7.58096 -6.48575 -5.62887 -3.11796 1.04709 1.27711 2.72356 2.95464 3.17442 3.46295 3.53167 3.57709 3.83190 4.44815 4.49950 4.60326 4.65979 4.76213 4.87118 4.91398 5.02521 5.12438 5.14355 5.17784 5.22039 5.25220 5.30746 5.37399 5.38205 5.43763 5.54786 5.56550 5.66349 5.82601 5.85901 5.96808 5.98426 6.08407 6.11185 6.20329 6.36920 6.53197 6.59019 6.70466 6.81923 6.84207 6.91743 7.12695 7.42688 7.55365 7.74942 7.99099 8.41788 8.51776 8.60752 9.36968 9.97408 10.49989 11.44155 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.002396 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.671529 B =11683.723456 C =12446.159339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.634 5.634 3 C 0.087 3.913 4 C 0.234 3.766 5 C -0.209 4.209 6 C -0.009 4.009 7 C -0.187 4.187 8 C 0.569 3.431 9 O -0.539 6.539 10 N -0.604 5.604 11 C 0.063 3.937 12 C 0.081 3.919 13 C 0.073 3.927 14 H 0.084 0.916 15 O -0.542 6.542 16 C 0.124 3.876 17 N -0.592 5.592 18 C 0.163 3.837 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.002 4.002 22 N -0.913 5.913 23 Si 0.904 3.096 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.292 1.292 27 C -0.053 4.053 28 C -0.213 4.213 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.368 0.632 43 H 0.041 0.959 44 H 0.051 0.949 45 H 0.019 0.981 46 H 0.052 0.948 47 H -0.010 1.010 48 H 0.250 0.750 49 H 0.141 0.859 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.464 26.821 12.124 29.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.345 5.345 3 C -0.056 4.056 4 C 0.131 3.869 5 C -0.231 4.231 6 C -0.028 4.028 7 C -0.192 4.192 8 C 0.359 3.641 9 O -0.417 6.417 10 N -0.337 5.337 11 C -0.080 4.080 12 C -0.042 4.042 13 C 0.009 3.991 14 H 0.102 0.898 15 O -0.346 6.346 16 C -0.004 4.004 17 N -0.314 5.314 18 C 0.018 3.982 19 C -0.368 4.368 20 H 0.087 0.913 21 C -0.199 4.199 22 N -0.558 5.558 23 Si 0.734 3.266 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.071 4.071 28 C -0.236 4.236 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.215 0.785 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.037 0.963 46 H 0.071 0.929 47 H 0.008 0.992 48 H 0.060 0.940 49 H 0.158 0.842 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.704 26.713 11.692 29.713 hybrid contribution -0.665 -0.737 -0.015 0.993 sum -6.368 25.976 11.677 29.184 Atomic orbital electron populations 1.21680 0.79317 1.02915 1.01422 1.46244 1.05285 1.03337 1.79592 1.21744 0.97862 0.84856 1.01126 1.18012 0.91373 0.85749 0.91808 1.20628 0.99987 0.90787 1.11703 1.20974 0.92496 0.97894 0.91454 1.19657 0.94294 0.92968 1.12267 1.18112 0.80649 0.88112 0.77199 1.90733 1.67430 1.36816 1.46739 1.47550 1.15689 1.08573 1.61847 1.22387 0.98471 0.87836 0.99305 1.22379 0.96405 0.84695 1.00717 1.23123 0.83566 0.97923 0.94455 0.89803 1.86540 1.20881 1.72464 1.54756 1.21345 0.96786 0.92616 0.89695 1.43686 1.29615 1.53455 1.04636 1.20745 0.92931 0.92378 0.92116 1.19254 0.91247 1.05894 1.20454 0.91347 1.25196 0.96438 0.97249 1.01033 1.70037 1.22323 1.32757 1.30700 0.86177 0.82705 0.79758 0.77930 1.20166 1.21822 1.21862 1.21615 1.00326 0.91059 0.94149 1.20612 0.92116 0.98520 1.12312 0.93155 0.91471 0.90923 0.90157 0.92459 0.92878 0.85493 0.84957 0.92587 0.91295 0.89355 0.90252 0.89641 0.78539 0.94096 0.93030 0.96302 0.92934 0.99160 0.93985 0.84185 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.34 59.85 0.62 1.12 16 2 N -0.63 -4.76 3.39 -187.55 -0.64 -5.39 16 3 C 0.09 0.44 10.59 59.85 0.63 1.07 16 4 C 0.23 2.26 6.54 -83.86 -0.55 1.71 16 5 C -0.21 -2.21 9.22 -39.45 -0.36 -2.58 16 6 C -0.01 -0.11 9.59 -39.23 -0.38 -0.49 16 7 C -0.19 -2.48 5.47 -104.95 -0.57 -3.05 16 8 C 0.57 8.99 6.89 -12.48 -0.09 8.91 16 9 O -0.54 -10.25 15.32 1.44 0.02 -10.23 16 10 N -0.60 -8.38 2.83 -182.81 -0.52 -8.90 16 11 C 0.06 0.62 8.80 59.85 0.53 1.15 16 12 C 0.08 1.19 5.19 -4.04 -0.02 1.17 16 13 C 0.07 1.34 3.48 -26.73 -0.09 1.25 16 14 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 15 O -0.54 -11.48 11.34 -39.07 -0.44 -11.93 16 16 C 0.12 2.58 5.37 -4.04 -0.02 2.56 16 17 N -0.59 -15.41 2.88 -181.12 -0.52 -15.93 16 18 C 0.16 4.15 8.99 59.85 0.54 4.69 16 19 C -0.24 -6.83 9.19 -15.06 -0.14 -6.97 16 20 H 0.07 1.96 7.40 -52.49 -0.39 1.57 16 21 C 0.00 -0.05 5.13 -17.43 -0.09 -0.14 16 22 N -0.91 -27.60 10.92 55.49 0.61 -26.99 16 23 Si 0.90 22.99 29.56 -169.99 -5.02 17.96 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 C -0.05 -0.54 7.41 -39.23 -0.29 -0.83 16 28 C -0.21 -1.94 9.25 -39.45 -0.36 -2.30 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 31 H 0.07 0.40 5.97 -51.93 -0.31 0.09 16 32 H 0.08 0.36 5.34 -51.93 -0.28 0.08 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.13 1.10 6.01 -52.48 -0.32 0.79 16 36 H 0.13 1.77 7.94 -52.49 -0.42 1.35 16 37 H 0.06 0.42 7.43 -51.93 -0.39 0.03 16 38 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 39 H 0.09 0.83 4.72 -51.93 -0.24 0.59 16 40 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 41 H 0.09 1.33 7.37 -51.93 -0.38 0.95 16 42 H 0.37 7.48 8.56 45.56 0.39 7.87 16 43 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 44 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 45 H 0.02 0.50 7.76 -51.93 -0.40 0.10 16 46 H 0.05 1.46 7.03 -51.93 -0.36 1.09 16 47 H -0.01 -0.22 8.11 -51.93 -0.42 -0.64 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.14 1.14 4.79 -52.49 -0.25 0.89 16 50 H 0.13 0.84 5.79 -52.49 -0.30 0.53 16 LS Contribution 394.48 15.07 5.94 5.94 Total: -1.00 -35.96 394.48 -8.22 -44.18 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.00 Total: 4.01 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -0.65 Total: 7.28 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -1.07 Total: -57.21 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.42 Total: -22.16 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.96 -8.22 -44.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332679341.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.483 kcal (2) G-P(sol) polarization free energy of solvation -35.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds