Wall clock time and date at job start Tue Mar 31 2020 18:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99928 * 2 1 4 4 C 1.39046 * 120.00157 * 180.02562 * 2 1 3 5 5 C 1.39219 * 119.93093 * 5.34396 * 4 2 1 6 6 C 1.37606 * 120.07135 * 180.02562 * 5 4 2 7 7 C 1.39802 * 119.92756 * 359.97438 * 6 5 4 8 8 C 1.47525 * 120.06468 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99880 * 328.71545 * 8 7 6 10 10 N 1.34771 * 119.99603 * 148.72391 * 8 7 6 11 11 C 1.46501 * 120.00193 * 3.50656 * 10 8 7 12 12 C 1.46500 * 119.99835 * 183.51422 * 10 8 7 13 13 C 1.53003 * 109.46995 * 89.99741 * 12 10 8 14 14 H 1.08997 * 109.47715 * 59.99817 * 13 12 10 15 15 O 1.42899 * 109.46948 * 299.99775 * 13 12 10 16 16 C 1.53006 * 109.47005 * 180.02562 * 13 12 10 17 17 N 1.46503 * 109.47131 * 184.99987 * 16 13 12 18 18 C 1.46503 * 119.99970 * 89.99502 * 17 16 13 19 19 C 1.36931 * 119.99850 * 269.99897 * 17 16 13 20 20 H 1.08001 * 120.00135 * 29.91089 * 19 17 16 21 21 C 1.38814 * 120.00005 * 209.91077 * 19 17 16 22 22 N 1.31616 * 119.99994 * 7.59200 * 21 19 17 23 23 Si 1.86799 * 120.00110 * 187.59440 * 21 19 17 24 24 H 1.48508 * 109.47164 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47519 * 119.99723 * 23 21 19 26 26 H 1.48501 * 109.47371 * 240.00302 * 23 21 19 27 27 C 1.39786 * 119.86381 * 0.28481 * 7 6 5 28 28 C 1.37611 * 119.92962 * 359.43756 * 27 7 6 29 29 H 1.08996 * 109.47272 * 270.00013 * 1 2 3 30 30 H 1.09006 * 109.47094 * 29.99788 * 1 2 3 31 31 H 1.08997 * 109.46788 * 149.99511 * 1 2 3 32 32 H 1.09004 * 109.46948 * 184.69654 * 3 2 1 33 33 H 1.09006 * 109.47347 * 304.69449 * 3 2 1 34 34 H 1.09000 * 109.47077 * 64.69741 * 3 2 1 35 35 H 1.08003 * 119.96603 * 0.04768 * 5 4 2 36 36 H 1.07991 * 120.03686 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.46776 * 95.12565 * 11 10 8 38 38 H 1.09001 * 109.47626 * 215.12139 * 11 10 8 39 39 H 1.08995 * 109.47264 * 335.12594 * 11 10 8 40 40 H 1.09002 * 109.47372 * 209.99204 * 12 10 8 41 41 H 1.08992 * 109.47134 * 329.99608 * 12 10 8 42 42 H 0.96692 * 114.00567 * 300.00047 * 15 13 12 43 43 H 1.08994 * 109.46818 * 304.99592 * 16 13 12 44 44 H 1.08996 * 109.47241 * 64.99573 * 16 13 12 45 45 H 1.08997 * 109.46528 * 85.45601 * 18 17 16 46 46 H 1.08997 * 109.47078 * 205.45127 * 18 17 16 47 47 H 1.08998 * 109.47472 * 325.45380 * 18 17 16 48 48 H 0.97000 * 120.00082 * 180.02562 * 22 21 19 49 49 H 1.07997 * 120.03886 * 179.69446 * 27 7 6 50 50 H 1.08000 * 119.96768 * 180.25726 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1603 -1.2042 -0.0005 5 6 1.4673 -2.4063 -0.1134 6 6 2.1524 -3.5997 -0.1138 7 6 3.5459 -3.6040 -0.0011 8 6 4.2835 -4.8816 -0.0017 9 8 3.7673 -5.8818 0.4585 10 7 5.5294 -4.9401 -0.5121 11 6 6.1807 -3.7204 -0.9961 12 6 6.2323 -6.2235 -0.5832 13 6 5.9278 -6.8983 -1.9222 14 1 6.2613 -6.2558 -2.7371 15 8 4.5205 -7.1191 -2.0351 16 6 6.6615 -8.2389 -1.9961 17 7 6.4671 -8.8295 -3.3227 18 6 7.4114 -8.5317 -4.4026 19 6 5.4029 -9.6596 -3.5533 20 1 4.4845 -9.5265 -3.0008 21 6 5.5043 -10.6724 -4.4973 22 7 6.6645 -10.9315 -5.0623 23 14 3.9944 -11.6674 -4.9656 24 1 2.8227 -11.1826 -4.1926 25 1 3.7289 -11.5103 -6.4182 26 1 4.2310 -13.1007 -4.6578 27 6 4.2383 -2.3955 0.1176 28 6 3.5479 -1.2052 0.1115 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 3.2662 1.0713 -0.0841 33 1 1.8726 1.8759 -0.8450 34 1 1.9988 1.8030 0.9291 35 1 0.3908 -2.4023 -0.2012 36 1 1.6143 -4.5319 -0.2010 37 1 6.8064 -3.3047 -0.2062 38 1 6.7988 -3.9575 -1.8621 39 1 5.4219 -2.9914 -1.2800 40 1 7.3058 -6.0551 -0.4971 41 1 5.8989 -6.8660 0.2316 42 1 4.1541 -7.6840 -1.3411 43 1 7.7256 -8.0808 -1.8212 44 1 6.2646 -8.9127 -1.2368 45 1 8.2574 -9.2165 -4.3444 46 1 6.9127 -8.6511 -5.3644 47 1 7.7665 -7.5061 -4.3023 48 1 6.7353 -11.6389 -5.7222 49 1 5.3144 -2.3958 0.2098 50 1 4.0827 -0.2709 0.1990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332679341.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:20 Heat of formation + Delta-G solvation = -17.341584 kcal Electronic energy + Delta-G solvation = -29304.689691 eV Core-core repulsion = 25333.317064 eV Total energy + Delta-G solvation = -3971.372627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.46016 -40.08733 -38.69878 -37.02514 -36.76000 -36.00577 -33.33782 -32.41089 -31.70959 -30.50383 -29.09559 -28.10352 -27.85194 -27.25233 -25.76287 -23.86578 -23.19485 -22.30648 -21.98914 -20.63524 -18.82799 -18.46372 -17.97716 -17.63518 -17.05312 -16.85676 -16.43821 -16.32979 -16.00934 -15.94814 -15.71515 -15.32324 -15.00766 -14.82684 -14.76335 -14.59854 -14.40160 -13.89736 -13.71121 -13.54481 -13.39630 -13.28587 -13.14616 -13.04648 -12.84129 -12.82763 -12.65351 -12.50595 -12.37138 -12.23555 -12.13939 -11.84127 -11.80113 -11.58780 -11.17478 -10.90078 -10.69022 -10.55811 -9.90282 -9.53512 -8.56831 -8.24473 -7.82543 -5.33711 0.18498 0.48903 1.43079 1.44299 1.55954 1.87896 2.16533 2.20678 2.51432 2.95333 3.32428 3.56336 3.70329 3.80358 3.84334 3.91973 4.11182 4.19220 4.27592 4.28006 4.43180 4.46806 4.50243 4.51705 4.57965 4.59333 4.66269 4.68339 4.79132 4.80056 4.85941 4.90312 4.93205 4.94188 4.96722 5.11335 5.23823 5.25344 5.33597 5.38306 5.50215 5.62698 5.64537 5.72174 5.77648 6.27745 6.41584 6.45694 6.50215 6.93438 7.20080 7.30003 7.89357 8.35046 9.21893 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.002396 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.671529 B =11683.723456 C =12446.159339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.634 5.634 3 C 0.080 3.920 4 C 0.234 3.766 5 C -0.217 4.217 6 C -0.029 4.029 7 C -0.217 4.217 8 C 0.560 3.440 9 O -0.587 6.587 10 N -0.605 5.605 11 C 0.055 3.945 12 C 0.092 3.908 13 C 0.083 3.917 14 H 0.079 0.921 15 O -0.564 6.564 16 C 0.123 3.877 17 N -0.612 5.612 18 C 0.176 3.824 19 C -0.242 4.242 20 H 0.061 0.939 21 C -0.057 4.057 22 N -0.941 5.941 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.291 1.291 26 H -0.289 1.289 27 C -0.043 4.043 28 C -0.212 4.212 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.139 0.861 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.368 0.632 43 H 0.067 0.933 44 H 0.043 0.957 45 H 0.000 1.000 46 H 0.020 0.980 47 H 0.027 0.973 48 H 0.247 0.753 49 H 0.165 0.835 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 30.278 12.897 33.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.343 5.343 3 C -0.062 4.062 4 C 0.129 3.871 5 C -0.239 4.239 6 C -0.049 4.049 7 C -0.222 4.222 8 C 0.352 3.648 9 O -0.469 6.469 10 N -0.335 5.335 11 C -0.086 4.086 12 C -0.032 4.032 13 C 0.021 3.979 14 H 0.097 0.903 15 O -0.369 6.369 16 C -0.004 4.004 17 N -0.334 5.334 18 C 0.031 3.969 19 C -0.373 4.373 20 H 0.079 0.921 21 C -0.251 4.251 22 N -0.588 5.588 23 Si 0.794 3.206 24 H -0.197 1.197 25 H -0.218 1.218 26 H -0.216 1.216 27 C -0.062 4.062 28 C -0.233 4.233 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.156 0.844 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.091 0.909 42 H 0.214 0.786 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.018 0.982 46 H 0.039 0.961 47 H 0.046 0.954 48 H 0.056 0.944 49 H 0.182 0.818 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.180 30.254 12.482 33.135 hybrid contribution -0.866 -1.619 -0.217 1.849 sum -6.046 28.635 12.265 31.732 Atomic orbital electron populations 1.21839 0.78431 1.03730 1.02017 1.46555 1.06168 1.03411 1.78169 1.21963 0.98128 0.83806 1.02326 1.18198 0.92010 0.86217 0.90704 1.20720 1.00654 0.90607 1.11966 1.20931 0.92873 0.97998 0.93117 1.19593 0.94307 0.93005 1.15270 1.18639 0.81079 0.88525 0.76606 1.90690 1.68595 1.38599 1.49024 1.47641 1.15313 1.09403 1.61184 1.22687 0.98859 0.86354 1.00709 1.22156 0.98392 0.85044 0.97603 1.22964 0.81809 0.96604 0.96565 0.90277 1.86506 1.22636 1.72576 1.55175 1.21525 0.98672 0.93252 0.86977 1.43931 1.29102 1.53721 1.06684 1.20515 0.91762 0.93930 0.90698 1.19431 0.91913 1.05979 1.19986 0.92088 1.25900 0.99019 0.98613 1.01561 1.70176 1.23906 1.33364 1.31343 0.85228 0.79774 0.78289 0.77339 1.19731 1.21822 1.21563 1.21819 1.01415 0.90093 0.92888 1.20957 0.91963 0.99333 1.11096 0.92645 0.89522 0.91310 0.89391 0.91196 0.91690 0.84375 0.87212 0.89145 0.90666 0.88850 0.86637 0.90905 0.78571 0.91454 0.93814 0.98204 0.96102 0.95433 0.94365 0.81827 0.82398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.34 127.77 1.32 2.05 16 2 N -0.63 -7.75 3.39 -747.28 -2.53 -10.28 16 3 C 0.08 0.51 10.59 127.77 1.35 1.86 16 4 C 0.23 4.06 6.54 38.47 0.25 4.31 16 5 C -0.22 -4.55 9.22 22.36 0.21 -4.35 16 6 C -0.03 -0.79 9.59 22.50 0.22 -0.57 16 7 C -0.22 -5.74 5.47 -20.08 -0.11 -5.85 16 8 C 0.56 17.93 6.89 86.69 0.60 18.53 16 9 O -0.59 -23.50 15.32 -0.34 -0.01 -23.50 16 10 N -0.60 -15.95 2.83 -850.56 -2.40 -18.36 16 11 C 0.06 0.92 8.80 127.77 1.12 2.04 16 12 C 0.09 2.56 5.19 86.38 0.45 3.01 16 13 C 0.08 3.00 3.48 30.60 0.11 3.11 16 14 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 15 O -0.56 -24.46 11.34 -145.31 -1.65 -26.11 16 16 C 0.12 5.02 5.37 86.38 0.46 5.49 16 17 N -0.61 -31.95 2.88 -726.94 -2.10 -34.05 16 18 C 0.18 8.97 8.99 127.77 1.15 10.12 16 19 C -0.24 -14.09 9.19 84.04 0.77 -13.32 16 20 H 0.06 3.58 7.40 -2.91 -0.02 3.56 16 21 C -0.06 -3.35 5.13 84.86 0.44 -2.91 16 22 N -0.94 -57.95 10.92 21.65 0.24 -57.71 16 23 Si 0.96 48.18 29.56 68.60 2.03 50.21 16 24 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 27 C -0.04 -0.79 7.41 22.50 0.17 -0.62 16 28 C -0.21 -3.21 9.25 22.36 0.21 -3.00 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.09 0.44 8.07 -2.38 -0.02 0.42 16 31 H 0.07 0.67 5.97 -2.39 -0.01 0.66 16 32 H 0.09 0.42 5.34 -2.39 -0.01 0.40 16 33 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.14 2.41 6.01 -2.91 -0.02 2.39 16 36 H 0.11 3.29 7.94 -2.92 -0.02 3.27 16 37 H 0.09 0.92 7.43 -2.39 -0.02 0.90 16 38 H 0.07 1.19 8.11 -2.39 -0.02 1.17 16 39 H 0.09 1.49 4.72 -2.39 -0.01 1.48 16 40 H 0.12 2.39 8.07 -2.39 -0.02 2.37 16 41 H 0.07 2.25 7.37 -2.39 -0.02 2.24 16 42 H 0.37 15.70 8.56 -74.06 -0.63 15.07 16 43 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 44 H 0.04 1.85 8.04 -2.39 -0.02 1.83 16 45 H 0.00 -0.02 7.76 -2.39 -0.02 -0.04 16 46 H 0.02 1.15 7.03 -2.39 -0.02 1.13 16 47 H 0.03 1.17 8.11 -2.39 -0.02 1.15 16 48 H 0.25 14.74 8.31 -92.71 -0.77 13.96 16 49 H 0.16 2.06 4.79 -2.91 -0.01 2.05 16 50 H 0.16 1.36 5.79 -2.91 -0.02 1.35 16 Total: -1.00 -80.63 394.48 2.60 -78.02 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.32 Total: 21.90 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 8.71 Total: 19.88 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -6.80 Total: -120.40 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -1.65 Total: -49.61 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -80.63 2.60 -78.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332679341.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.680 kcal (2) G-P(sol) polarization free energy of solvation -80.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds