Wall clock time and date at job start Tue Mar 31 2020 18:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00026 * 2 1 4 4 C 1.46894 * 111.00570 * 123.96045 * 2 1 3 5 5 C 1.52995 * 109.47805 * 169.99639 * 4 2 1 6 6 H 1.08997 * 109.46994 * 64.99555 * 5 4 2 7 7 N 1.46898 * 109.46917 * 305.00139 * 5 4 2 8 8 C 1.46899 * 111.00124 * 154.99769 * 7 5 4 9 9 C 1.50698 * 109.47070 * 179.97438 * 8 7 5 10 10 C 1.38288 * 119.92407 * 90.00087 * 9 8 7 11 11 C 1.38111 * 120.07382 * 179.69843 * 10 9 8 12 12 C 1.38906 * 119.92343 * 0.28047 * 11 10 9 13 13 N 1.39676 * 120.07171 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00261 * 359.97438 * 13 12 11 15 15 C 1.46500 * 120.00062 * 179.97438 * 13 12 11 16 16 C 1.50702 * 109.47458 * 89.99484 * 15 13 12 17 17 H 1.08007 * 119.99580 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00251 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00212 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99942 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47202 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47179 * 119.99438 * 20 18 16 23 23 H 1.48500 * 109.46992 * 239.99882 * 20 18 16 24 24 C 1.38908 * 119.85606 * 359.97438 * 12 11 10 25 25 C 1.38112 * 119.92096 * 0.02562 * 24 12 11 26 26 C 1.50697 * 109.47458 * 184.99758 * 5 4 2 27 27 O 1.20833 * 119.99828 * 119.99763 * 26 5 4 28 28 O 1.34224 * 119.99937 * 300.00166 * 26 5 4 29 29 H 1.09004 * 109.46664 * 296.04485 * 1 2 3 30 30 H 1.08995 * 109.47531 * 56.04033 * 1 2 3 31 31 H 1.08994 * 109.47277 * 176.04443 * 1 2 3 32 32 H 1.09000 * 109.46833 * 183.95558 * 3 2 1 33 33 H 1.08998 * 109.47113 * 303.95527 * 3 2 1 34 34 H 1.08996 * 109.47089 * 63.96302 * 3 2 1 35 35 H 1.09007 * 109.47105 * 49.99175 * 4 2 1 36 36 H 1.09007 * 109.47122 * 289.99935 * 4 2 1 37 37 H 1.00897 * 111.00057 * 31.04265 * 7 5 4 38 38 H 1.09001 * 109.47298 * 60.00095 * 8 7 5 39 39 H 1.09003 * 109.47252 * 299.99696 * 8 7 5 40 40 H 1.08002 * 119.96530 * 359.97438 * 10 9 8 41 41 H 1.08000 * 120.03725 * 180.29787 * 11 10 9 42 42 H 1.09003 * 109.46748 * 90.00479 * 14 13 12 43 43 H 1.09000 * 109.47356 * 210.00064 * 14 13 12 44 44 H 1.09000 * 109.47257 * 330.00749 * 14 13 12 45 45 H 1.08994 * 109.47318 * 210.00032 * 15 13 12 46 46 H 1.09001 * 109.47009 * 329.99755 * 15 13 12 47 47 H 0.96992 * 120.00096 * 180.02562 * 19 18 16 48 48 H 1.07998 * 120.04186 * 180.02562 * 24 12 11 49 49 H 1.08002 * 119.96339 * 180.02562 * 25 24 12 50 50 H 0.96709 * 116.99786 * 180.02562 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1374 5 6 3.5045 -0.9555 0.9701 6 1 4.0002 0.0139 1.0211 7 7 3.7784 -1.5776 -0.3321 8 6 5.1339 -1.2527 -0.7960 9 6 5.3781 -1.9073 -2.1313 10 6 5.0665 -1.2327 -3.2976 11 6 5.2949 -1.8272 -4.5231 12 6 5.8328 -3.1064 -4.5831 13 7 6.0646 -3.7108 -5.8208 14 6 5.7397 -2.9958 -7.0575 15 6 6.6325 -5.0599 -5.8824 16 6 5.5184 -6.0747 -5.8788 17 1 4.4901 -5.7474 -5.8355 18 6 5.8119 -7.4208 -5.9309 19 7 7.0641 -7.8193 -5.9841 20 14 4.4308 -8.6786 -5.9272 21 1 3.1231 -7.9778 -5.8629 22 1 4.4973 -9.4905 -7.1689 23 1 4.5741 -9.5675 -4.7462 24 6 6.1398 -3.7833 -3.4096 25 6 5.9089 -3.1830 -2.1875 26 6 4.0243 -1.8440 2.0707 27 8 4.5673 -2.8885 1.7981 28 8 3.8841 -1.4752 3.3536 29 1 -0.3633 0.4512 0.9234 30 1 -0.3634 0.5740 -0.8523 31 1 -0.3633 -1.0251 -0.0709 32 1 3.0828 1.3432 -0.0709 33 1 1.5898 1.9163 -0.8524 34 1 1.7045 1.8723 0.9233 35 1 1.5090 -1.7408 1.1755 36 1 1.7976 -0.2249 2.0627 37 1 3.0875 -1.3056 -1.0153 38 1 5.8629 -1.6192 -0.0734 39 1 5.2341 -0.1720 -0.8970 40 1 4.6482 -0.2381 -3.2501 41 1 5.0558 -1.2979 -5.4336 42 1 6.6060 -2.4191 -7.3820 43 1 5.4703 -3.7136 -7.8323 44 1 4.9014 -2.3225 -6.8785 45 1 7.2180 -5.1663 -6.7955 46 1 7.2755 -5.2232 -5.0175 47 1 7.2705 -8.7663 -6.0211 48 1 6.5586 -4.7779 -3.4528 49 1 6.1477 -3.7085 -1.2746 50 1 4.2338 -2.0778 4.0244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339268489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:53 Heat of formation + Delta-G solvation = -39.623654 kcal Electronic energy + Delta-G solvation = -29018.296412 eV Core-core repulsion = 25045.957562 eV Total energy + Delta-G solvation = -3972.338850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.51450 -38.95939 -38.22545 -36.46504 -35.96303 -34.70525 -32.67202 -31.13113 -30.34652 -28.59650 -27.99012 -27.73168 -25.80192 -25.29355 -23.88064 -22.24446 -21.96550 -21.44042 -20.68981 -19.49540 -18.20422 -17.06668 -16.75064 -16.44756 -16.18758 -15.82099 -15.32872 -15.21664 -15.13497 -14.61249 -14.51311 -14.24674 -14.02317 -13.68608 -13.60682 -13.09333 -12.90582 -12.80126 -12.72942 -12.61868 -12.17157 -12.11197 -12.05338 -11.93845 -11.70592 -11.66982 -11.34645 -11.27690 -11.19558 -10.88113 -10.69319 -10.63776 -10.50393 -10.19803 -9.82050 -9.68420 -8.84534 -8.78197 -8.45896 -8.40211 -8.16627 -6.40569 -5.96282 -4.11998 2.11115 2.21015 2.28271 2.79255 3.29990 3.38032 3.43479 3.49757 4.15439 4.23107 4.45193 4.46808 4.62709 4.73705 4.77816 4.96144 5.07021 5.15151 5.17336 5.25123 5.26787 5.33509 5.37996 5.45002 5.51601 5.56147 5.63600 5.67734 5.85454 5.91956 6.09120 6.16466 6.33488 6.36851 6.47401 6.48921 6.53005 6.54062 6.73530 6.87861 7.03289 7.11608 7.26459 7.34441 7.45358 7.53052 7.69460 7.85057 7.86712 8.21078 8.33080 8.55536 8.97501 9.54855 11.00756 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011850 B = 0.002658 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.381819 B =10529.830032 C =11095.491813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.017 3.983 4 C 0.057 3.943 5 C 0.105 3.895 6 H 0.078 0.922 7 N -0.659 5.659 8 C 0.118 3.882 9 C -0.171 4.171 10 C -0.065 4.065 11 C -0.223 4.223 12 C 0.243 3.757 13 N -0.616 5.616 14 C 0.099 3.901 15 C 0.249 3.751 16 C -0.529 4.529 17 H 0.060 0.940 18 C 0.061 3.939 19 N -0.896 5.896 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.282 1.282 24 C -0.190 4.190 25 C -0.046 4.046 26 C 0.472 3.528 27 O -0.480 6.480 28 O -0.527 6.527 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.371 0.629 38 H 0.070 0.930 39 H 0.028 0.972 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.034 0.966 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.029 0.971 46 H 0.036 0.964 47 H 0.263 0.737 48 H 0.131 0.869 49 H 0.113 0.887 50 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.158 19.872 14.690 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.131 4.131 4 C -0.071 4.071 5 C -0.008 4.008 6 H 0.095 0.905 7 N -0.296 5.296 8 C -0.010 4.010 9 C -0.174 4.174 10 C -0.085 4.085 11 C -0.247 4.247 12 C 0.136 3.864 13 N -0.322 5.322 14 C -0.045 4.045 15 C 0.129 3.871 16 C -0.568 4.568 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.212 4.212 25 C -0.065 4.065 26 C 0.311 3.689 27 O -0.363 6.363 28 O -0.339 6.339 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.196 0.804 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.073 0.927 48 H 0.149 0.851 49 H 0.131 0.869 50 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -8.674 18.729 13.884 24.875 hybrid contribution -0.855 -0.017 0.856 1.210 sum -9.529 18.712 14.741 25.656 Atomic orbital electron populations 1.22375 0.86145 1.02899 1.00695 1.61815 1.08814 1.13961 1.42426 1.22506 1.00953 0.88678 1.00994 1.22178 0.92645 0.99878 0.92425 1.20892 0.96095 0.94316 0.89502 0.90492 1.60021 1.05209 1.62071 1.02349 1.20728 0.89748 0.95988 0.94561 1.19071 1.08919 0.96524 0.92882 1.20489 0.98039 0.98155 0.91771 1.20493 1.10615 0.95990 0.97556 1.17957 0.91155 0.90922 0.86403 1.47091 1.66027 1.17535 1.01539 1.21460 0.98736 0.96643 0.87682 1.19285 0.93769 0.76149 0.97921 1.21627 0.93633 0.90846 1.50709 0.92180 1.24961 0.95657 0.98454 0.95034 1.69937 1.17260 1.15826 1.50466 0.86472 0.82365 0.81243 0.77588 1.19690 1.21013 1.20828 1.20900 1.07791 1.01706 0.90801 1.20688 0.95615 0.93434 0.96787 1.23545 0.76849 0.85948 0.82595 1.90764 1.38426 1.23705 1.83440 1.84512 1.77054 1.54613 1.17719 0.95454 0.90905 0.90852 0.91373 0.90835 0.95219 0.89206 0.92725 0.80444 0.91143 0.95419 0.87715 0.87008 0.94709 0.91516 0.92708 0.95258 0.94602 0.92743 0.85138 0.86878 0.73334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.57 60.06 0.57 0.75 16 2 N -0.55 -4.32 3.85 -251.27 -0.97 -5.29 16 3 C 0.02 0.11 9.32 60.07 0.56 0.67 16 4 C 0.06 0.48 4.52 -3.83 -0.02 0.46 16 5 C 0.10 1.04 2.33 -68.87 -0.16 0.88 16 6 H 0.08 0.67 6.45 -51.93 -0.34 0.33 16 7 N -0.66 -8.39 5.83 -109.23 -0.64 -9.03 16 8 C 0.12 1.57 5.50 -4.98 -0.03 1.55 16 9 C -0.17 -2.79 5.39 -104.59 -0.56 -3.35 16 10 C -0.07 -1.03 9.69 -39.61 -0.38 -1.41 16 11 C -0.22 -3.97 9.21 -39.38 -0.36 -4.34 16 12 C 0.24 5.08 6.55 -83.79 -0.55 4.53 16 13 N -0.62 -13.56 2.99 -181.00 -0.54 -14.10 16 14 C 0.10 1.78 10.19 59.85 0.61 2.39 16 15 C 0.25 6.39 4.91 -5.19 -0.03 6.37 16 16 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 17 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 20 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.19 -4.05 9.21 -39.38 -0.36 -4.41 16 25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 26 C 0.47 5.34 7.51 36.00 0.27 5.61 16 27 O -0.48 -7.43 16.68 -18.76 -0.31 -7.74 16 28 O -0.53 -4.20 13.35 -39.24 -0.52 -4.73 16 29 H 0.03 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 32 H 0.07 0.45 6.58 -51.93 -0.34 0.11 16 33 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 34 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.09 0.82 8.06 -51.93 -0.42 0.40 16 36 H 0.05 0.39 8.12 -51.92 -0.42 -0.03 16 37 H 0.37 4.70 7.35 -39.29 -0.29 4.42 16 38 H 0.07 1.01 7.56 -51.93 -0.39 0.61 16 39 H 0.03 0.32 8.00 -51.93 -0.42 -0.10 16 40 H 0.10 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.11 1.79 6.14 -52.49 -0.32 1.46 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 45 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 46 H 0.04 0.98 6.20 -51.93 -0.32 0.66 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.13 3.08 6.14 -52.49 -0.32 2.75 16 49 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16 50 H 0.41 1.74 9.10 45.56 0.41 2.15 16 LS Contribution 408.37 15.07 6.15 6.15 Total: -1.00 -32.88 408.37 -9.60 -42.48 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.25 Total: 5.95 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.24 Total: -5.07 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -1.41 Total: -53.89 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.84 Total: -12.47 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.88 -9.60 -42.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339268489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.856 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds