Wall clock time and date at job start Tue Mar 31 2020 18:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00026 * 2 1 4 4 C 1.46894 * 111.00570 * 123.96045 * 2 1 3 5 5 C 1.52995 * 109.47805 * 169.99639 * 4 2 1 6 6 H 1.08997 * 109.46994 * 64.99555 * 5 4 2 7 7 N 1.46898 * 109.46917 * 305.00139 * 5 4 2 8 8 C 1.46899 * 111.00124 * 154.99769 * 7 5 4 9 9 C 1.50698 * 109.47070 * 179.97438 * 8 7 5 10 10 C 1.38288 * 119.92407 * 90.00087 * 9 8 7 11 11 C 1.38111 * 120.07382 * 179.69843 * 10 9 8 12 12 C 1.38906 * 119.92343 * 0.28047 * 11 10 9 13 13 N 1.39676 * 120.07171 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00261 * 359.97438 * 13 12 11 15 15 C 1.46500 * 120.00062 * 179.97438 * 13 12 11 16 16 C 1.50702 * 109.47458 * 89.99484 * 15 13 12 17 17 H 1.08007 * 119.99580 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00251 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00212 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99942 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47202 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47179 * 119.99438 * 20 18 16 23 23 H 1.48500 * 109.46992 * 239.99882 * 20 18 16 24 24 C 1.38908 * 119.85606 * 359.97438 * 12 11 10 25 25 C 1.38112 * 119.92096 * 0.02562 * 24 12 11 26 26 C 1.50697 * 109.47458 * 184.99758 * 5 4 2 27 27 O 1.20833 * 119.99828 * 119.99763 * 26 5 4 28 28 O 1.34224 * 119.99937 * 300.00166 * 26 5 4 29 29 H 1.09004 * 109.46664 * 296.04485 * 1 2 3 30 30 H 1.08995 * 109.47531 * 56.04033 * 1 2 3 31 31 H 1.08994 * 109.47277 * 176.04443 * 1 2 3 32 32 H 1.09000 * 109.46833 * 183.95558 * 3 2 1 33 33 H 1.08998 * 109.47113 * 303.95527 * 3 2 1 34 34 H 1.08996 * 109.47089 * 63.96302 * 3 2 1 35 35 H 1.09007 * 109.47105 * 49.99175 * 4 2 1 36 36 H 1.09007 * 109.47122 * 289.99935 * 4 2 1 37 37 H 1.00897 * 111.00057 * 31.04265 * 7 5 4 38 38 H 1.09001 * 109.47298 * 60.00095 * 8 7 5 39 39 H 1.09003 * 109.47252 * 299.99696 * 8 7 5 40 40 H 1.08002 * 119.96530 * 359.97438 * 10 9 8 41 41 H 1.08000 * 120.03725 * 180.29787 * 11 10 9 42 42 H 1.09003 * 109.46748 * 90.00479 * 14 13 12 43 43 H 1.09000 * 109.47356 * 210.00064 * 14 13 12 44 44 H 1.09000 * 109.47257 * 330.00749 * 14 13 12 45 45 H 1.08994 * 109.47318 * 210.00032 * 15 13 12 46 46 H 1.09001 * 109.47009 * 329.99755 * 15 13 12 47 47 H 0.96992 * 120.00096 * 180.02562 * 19 18 16 48 48 H 1.07998 * 120.04186 * 180.02562 * 24 12 11 49 49 H 1.08002 * 119.96339 * 180.02562 * 25 24 12 50 50 H 0.96709 * 116.99786 * 180.02562 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1374 5 6 3.5045 -0.9555 0.9701 6 1 4.0002 0.0139 1.0211 7 7 3.7784 -1.5776 -0.3321 8 6 5.1339 -1.2527 -0.7960 9 6 5.3781 -1.9073 -2.1313 10 6 5.0665 -1.2327 -3.2976 11 6 5.2949 -1.8272 -4.5231 12 6 5.8328 -3.1064 -4.5831 13 7 6.0646 -3.7108 -5.8208 14 6 5.7397 -2.9958 -7.0575 15 6 6.6325 -5.0599 -5.8824 16 6 5.5184 -6.0747 -5.8788 17 1 4.4901 -5.7474 -5.8355 18 6 5.8119 -7.4208 -5.9309 19 7 7.0641 -7.8193 -5.9841 20 14 4.4308 -8.6786 -5.9272 21 1 3.1231 -7.9778 -5.8629 22 1 4.4973 -9.4905 -7.1689 23 1 4.5741 -9.5675 -4.7462 24 6 6.1398 -3.7833 -3.4096 25 6 5.9089 -3.1830 -2.1875 26 6 4.0243 -1.8440 2.0707 27 8 4.5673 -2.8885 1.7981 28 8 3.8841 -1.4752 3.3536 29 1 -0.3633 0.4512 0.9234 30 1 -0.3634 0.5740 -0.8523 31 1 -0.3633 -1.0251 -0.0709 32 1 3.0828 1.3432 -0.0709 33 1 1.5898 1.9163 -0.8524 34 1 1.7045 1.8723 0.9233 35 1 1.5090 -1.7408 1.1755 36 1 1.7976 -0.2249 2.0627 37 1 3.0875 -1.3056 -1.0153 38 1 5.8629 -1.6192 -0.0734 39 1 5.2341 -0.1720 -0.8970 40 1 4.6482 -0.2381 -3.2501 41 1 5.0558 -1.2979 -5.4336 42 1 6.6060 -2.4191 -7.3820 43 1 5.4703 -3.7136 -7.8323 44 1 4.9014 -2.3225 -6.8785 45 1 7.2180 -5.1663 -6.7955 46 1 7.2755 -5.2232 -5.0175 47 1 7.2705 -8.7663 -6.0211 48 1 6.5586 -4.7779 -3.4528 49 1 6.1477 -3.7085 -1.2746 50 1 4.2338 -2.0778 4.0244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339268489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:53 Heat of formation + Delta-G solvation = -62.412390 kcal Electronic energy + Delta-G solvation = -29019.284606 eV Core-core repulsion = 25045.957562 eV Total energy + Delta-G solvation = -3973.327044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37307 -40.39937 -38.94007 -37.62423 -37.02220 -35.82973 -34.71553 -32.24414 -31.86064 -29.89247 -29.46347 -28.44987 -27.00206 -26.29139 -25.49739 -23.61071 -22.97788 -22.76846 -21.45258 -20.99203 -19.02496 -18.63877 -18.14822 -17.83980 -17.16215 -16.87827 -16.57175 -16.29413 -16.04628 -15.85050 -15.54791 -15.41366 -15.24200 -15.06691 -14.85797 -14.44225 -14.25805 -14.03749 -13.97025 -13.44771 -13.33396 -13.17510 -13.07701 -13.00330 -12.89792 -12.66212 -12.62492 -12.57068 -12.53891 -12.46127 -12.26370 -12.05910 -11.88638 -11.70345 -11.48071 -11.39016 -10.64771 -10.40026 -9.63910 -9.40114 -9.28663 -8.36225 -7.78754 -6.37443 0.74290 0.85086 1.26120 1.34978 1.37299 1.49488 2.05779 2.34459 2.65148 2.87177 3.05925 3.11245 3.52724 3.77554 3.94929 4.08154 4.18002 4.23014 4.25794 4.42551 4.46232 4.48572 4.51356 4.53995 4.66913 4.69276 4.73874 4.75202 4.79336 4.81685 4.89380 4.91801 5.04069 5.08498 5.10169 5.14567 5.21753 5.35562 5.60786 5.67125 5.67788 5.71144 5.90964 5.96197 6.03790 6.07254 6.07530 6.24243 6.51385 6.58183 6.83725 6.96130 7.09832 7.34443 8.83357 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011850 B = 0.002658 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.381819 B =10529.830032 C =11095.491813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.559 5.559 3 C 0.016 3.984 4 C 0.065 3.935 5 C 0.107 3.893 6 H 0.100 0.900 7 N -0.676 5.676 8 C 0.124 3.876 9 C -0.158 4.158 10 C -0.053 4.053 11 C -0.215 4.215 12 C 0.215 3.785 13 N -0.632 5.632 14 C 0.098 3.902 15 C 0.266 3.734 16 C -0.540 4.540 17 H 0.049 0.951 18 C 0.011 3.989 19 N -0.927 5.927 20 Si 0.962 3.038 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.279 1.279 24 C -0.219 4.219 25 C -0.056 4.056 26 C 0.478 3.522 27 O -0.531 6.531 28 O -0.514 6.514 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.372 0.628 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.150 0.850 41 H 0.137 0.863 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.011 0.989 46 H 0.008 0.992 47 H 0.267 0.733 48 H 0.090 0.910 49 H 0.106 0.894 50 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.353 22.993 15.535 29.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.284 5.284 3 C -0.131 4.131 4 C -0.063 4.063 5 C -0.005 4.005 6 H 0.118 0.882 7 N -0.315 5.315 8 C -0.004 4.004 9 C -0.160 4.160 10 C -0.072 4.072 11 C -0.237 4.237 12 C 0.110 3.890 13 N -0.340 5.340 14 C -0.045 4.045 15 C 0.144 3.856 16 C -0.579 4.579 17 H 0.067 0.933 18 C -0.188 4.188 19 N -0.567 5.567 20 Si 0.786 3.214 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.205 1.205 24 C -0.242 4.242 25 C -0.075 4.075 26 C 0.318 3.682 27 O -0.419 6.419 28 O -0.327 6.327 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.197 0.803 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.167 0.833 41 H 0.155 0.845 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.029 0.971 46 H 0.026 0.974 47 H 0.076 0.924 48 H 0.108 0.892 49 H 0.124 0.876 50 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -10.888 21.902 14.766 28.571 hybrid contribution -0.188 -0.865 0.760 1.166 sum -11.076 21.037 15.526 28.395 Atomic orbital electron populations 1.22383 0.85506 1.02700 1.01482 1.61800 1.09502 1.14859 1.42202 1.22543 1.00949 0.87891 1.01741 1.22069 0.91187 0.99664 0.93413 1.20971 0.97435 0.94482 0.87642 0.88248 1.59852 1.04680 1.63373 1.03558 1.20641 0.90062 0.97337 0.92311 1.19419 1.06461 0.95093 0.95066 1.20927 0.96302 0.99578 0.90375 1.20807 1.08985 0.94387 0.99564 1.18206 0.92827 0.92457 0.85508 1.46959 1.67182 1.16526 1.03339 1.21613 1.00471 0.96549 0.85826 1.18760 0.92809 0.78463 0.95530 1.21819 0.93528 0.91868 1.50651 0.93286 1.25794 0.98042 1.00415 0.94556 1.70041 1.19107 1.16436 1.51160 0.85452 0.79254 0.78655 0.77997 1.19460 1.19653 1.20496 1.20732 1.10045 1.00727 0.92695 1.20725 0.96448 0.94901 0.95475 1.23856 0.75522 0.85167 0.83641 1.90761 1.40938 1.25917 1.84297 1.84468 1.76497 1.54744 1.17006 0.94545 0.90224 0.91590 0.91292 0.90214 0.94406 0.90539 0.91230 0.80298 0.92427 0.92168 0.83251 0.84490 0.92847 0.92584 0.90117 0.97142 0.97423 0.92409 0.89193 0.87561 0.71347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.57 127.69 1.22 1.51 16 2 N -0.56 -7.19 3.85 -948.88 -3.65 -10.84 16 3 C 0.02 0.15 9.32 127.69 1.19 1.34 16 4 C 0.07 0.92 4.52 86.30 0.39 1.31 16 5 C 0.11 1.86 2.33 44.17 0.10 1.97 16 6 H 0.10 1.33 6.45 -2.39 -0.02 1.31 16 7 N -0.68 -15.81 5.83 -499.48 -2.91 -18.72 16 8 C 0.12 3.02 5.50 85.56 0.47 3.49 16 9 C -0.16 -4.87 5.39 -19.84 -0.11 -4.98 16 10 C -0.05 -1.48 9.69 22.25 0.22 -1.27 16 11 C -0.21 -7.14 9.21 22.40 0.21 -6.93 16 12 C 0.21 9.14 6.55 38.21 0.25 9.39 16 13 N -0.63 -28.64 2.99 -726.57 -2.17 -30.81 16 14 C 0.10 3.47 10.19 127.77 1.30 4.77 16 15 C 0.27 14.54 4.91 85.63 0.42 14.96 16 16 C -0.54 -31.53 9.39 25.60 0.24 -31.29 16 17 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 18 C 0.01 0.64 5.46 84.65 0.46 1.10 16 19 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 20 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 21 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 C -0.22 -9.95 9.21 22.40 0.21 -9.74 16 25 C -0.06 -2.18 9.69 22.25 0.22 -1.96 16 26 C 0.48 10.10 7.51 71.24 0.53 10.63 16 27 O -0.53 -16.44 16.68 21.94 0.37 -16.07 16 28 O -0.51 -7.05 13.35 -51.36 -0.69 -7.73 16 29 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.08 0.73 8.12 -2.39 -0.02 0.71 16 31 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 32 H 0.07 0.62 6.58 -2.39 -0.02 0.61 16 33 H 0.08 0.64 8.12 -2.39 -0.02 0.63 16 34 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.08 1.29 8.06 -2.38 -0.02 1.27 16 36 H 0.07 0.78 8.12 -2.38 -0.02 0.76 16 37 H 0.37 8.42 7.35 -89.70 -0.66 7.76 16 38 H 0.06 1.57 7.56 -2.39 -0.02 1.56 16 39 H 0.06 1.10 8.00 -2.39 -0.02 1.08 16 40 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 41 H 0.14 3.84 6.14 -2.91 -0.02 3.82 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 44 H 0.08 2.39 6.20 -2.39 -0.01 2.37 16 45 H 0.01 0.60 8.07 -2.39 -0.02 0.58 16 46 H 0.01 0.46 6.20 -2.39 -0.01 0.45 16 47 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 48 H 0.09 4.72 6.14 -2.91 -0.02 4.70 16 49 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 50 H 0.43 2.81 9.10 -74.05 -0.67 2.13 16 Total: -1.00 -75.05 408.37 0.20 -74.85 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.38 Total: 23.16 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 7.32 Total: -5.71 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -8.45 Total: -116.33 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.32 Total: -23.81 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -75.05 0.20 -74.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339268489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.434 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds