Wall clock time and date at job start Tue Mar 31 2020 18:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 110.99612 * 2 1 4 4 C 1.53001 * 109.46763 * 191.45043 * 3 2 1 5 5 O 1.42903 * 109.47175 * 63.29032 * 4 3 2 6 6 C 1.46900 * 110.99524 * 123.95006 * 2 1 3 7 7 C 1.52994 * 109.47279 * 66.05258 * 6 2 1 8 8 N 1.46499 * 109.47201 * 179.97438 * 7 6 2 9 9 C 1.46504 * 120.00145 * 269.99603 * 8 7 6 10 10 C 1.34775 * 120.00290 * 89.99747 * 8 7 6 11 11 O 1.21588 * 120.00069 * 359.97438 * 10 8 7 12 12 N 1.34773 * 120.00276 * 180.02562 * 10 8 7 13 13 C 1.39954 * 120.00326 * 184.88379 * 12 10 8 14 14 C 1.38867 * 120.06609 * 324.71707 * 13 12 10 15 15 C 1.38111 * 119.92946 * 180.02562 * 14 13 12 16 16 C 1.38278 * 120.06991 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.93017 * 179.97438 * 16 15 14 18 18 C 1.50693 * 109.47316 * 90.00034 * 17 16 15 19 19 H 1.08004 * 120.00219 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00009 * 180.27497 * 18 17 16 21 21 N 1.31511 * 119.99850 * 359.72246 * 20 18 17 22 22 Si 1.86808 * 120.00090 * 179.72147 * 20 18 17 23 23 H 1.48500 * 109.46688 * 89.99852 * 22 20 18 24 24 H 1.48496 * 109.46922 * 210.00076 * 22 20 18 25 25 H 1.48499 * 109.46941 * 330.00347 * 22 20 18 26 26 C 1.38279 * 120.14041 * 0.22855 * 16 15 14 27 27 C 1.38117 * 120.06880 * 359.49563 * 26 16 15 28 28 H 1.09000 * 109.47189 * 300.64014 * 1 2 3 29 29 H 1.09000 * 109.46864 * 60.64390 * 1 2 3 30 30 H 1.09001 * 109.47371 * 180.63915 * 1 2 3 31 31 H 1.09000 * 109.47276 * 311.44777 * 3 2 1 32 32 H 1.08996 * 109.47569 * 71.45328 * 3 2 1 33 33 H 1.08998 * 109.47071 * 183.28949 * 4 3 2 34 34 H 1.09002 * 109.47406 * 303.28876 * 4 3 2 35 35 H 0.96702 * 113.99901 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.47448 * 306.04616 * 6 2 1 37 37 H 1.09008 * 109.46383 * 186.04615 * 6 2 1 38 38 H 1.08997 * 109.47404 * 59.99331 * 7 6 2 39 39 H 1.09007 * 109.47176 * 299.99512 * 7 6 2 40 40 H 1.09003 * 109.46880 * 270.00307 * 9 8 7 41 41 H 1.09000 * 109.46692 * 29.99842 * 9 8 7 42 42 H 1.08996 * 109.47451 * 149.99631 * 9 8 7 43 43 H 0.96998 * 120.00063 * 4.87463 * 12 10 8 44 44 H 1.07998 * 120.03274 * 0.02562 * 14 13 12 45 45 H 1.07998 * 119.96809 * 180.02562 * 15 14 13 46 46 H 1.09000 * 109.47239 * 329.99662 * 17 16 15 47 47 H 1.09005 * 109.46665 * 209.99857 * 17 16 15 48 48 H 0.97001 * 120.00003 * 179.97438 * 21 20 18 49 49 H 1.08001 * 119.96679 * 179.72236 * 26 16 15 50 50 H 1.07997 * 120.03423 * 180.25229 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 3.4980 1.3409 -0.2864 5 8 3.7229 0.8131 -1.5952 6 6 1.9953 -0.7659 1.1377 7 6 1.6314 -2.2425 0.9705 8 7 2.1569 -3.0064 2.1047 9 6 3.5019 -3.5836 2.0391 10 6 1.4030 -3.1784 3.2086 11 8 0.2869 -2.6991 3.2633 12 7 1.8865 -3.8807 4.2523 13 6 1.0684 -4.1466 5.3562 14 6 0.1356 -3.2062 5.7733 15 6 -0.6700 -3.4713 6.8634 16 6 -0.5481 -4.6713 7.5395 17 6 -1.4284 -4.9571 8.7289 18 6 -2.6927 -5.6346 8.2669 19 1 -2.8440 -5.8376 7.2170 20 6 -3.6591 -5.9897 9.1840 21 7 -3.4752 -5.7421 10.4624 22 14 -5.2298 -6.8226 8.6104 23 1 -5.0387 -8.2952 8.6136 24 1 -6.3423 -6.4658 9.5270 25 1 -5.5568 -6.3688 7.2348 26 6 0.3834 -5.6076 7.1298 27 6 1.1880 -5.3509 6.0370 28 1 -0.3633 0.5237 0.8842 29 1 -0.3633 0.5038 -0.8957 30 1 -0.3634 -1.0276 0.0115 31 1 1.4905 1.9544 -0.7703 32 1 1.8204 1.8278 0.9742 33 1 3.8995 2.3526 -0.2287 34 1 3.9956 0.7101 0.4502 35 1 4.6559 0.7649 -1.8449 36 1 1.5610 -0.3872 2.0628 37 1 3.0797 -0.6610 1.1757 38 1 2.0658 -2.6213 0.0453 39 1 0.5471 -2.3475 0.9324 40 1 3.4458 -4.5892 1.6224 41 1 4.1333 -2.9619 1.4044 42 1 3.9271 -3.6288 3.0417 43 1 2.8016 -4.2021 4.2383 44 1 0.0402 -2.2686 5.2459 45 1 -1.3960 -2.7406 7.1881 46 1 -1.6793 -4.0213 9.2284 47 1 -0.8996 -5.6095 9.4238 48 1 -4.1552 -5.9916 11.1075 49 1 0.4793 -6.5421 7.6627 50 1 1.9126 -6.0842 5.7150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467297330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:37 Heat of formation + Delta-G solvation = -34.805882 kcal Electronic energy + Delta-G solvation = -28461.043576 eV Core-core repulsion = 24488.913640 eV Total energy + Delta-G solvation = -3972.129936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.69969 -38.83299 -38.22050 -36.58524 -35.54822 -34.88878 -32.97825 -30.98244 -30.24975 -30.12509 -29.23212 -27.15482 -26.53706 -25.24910 -23.64359 -22.76624 -22.27569 -21.03333 -20.45341 -19.72726 -18.44749 -17.85836 -17.18622 -16.45659 -16.27550 -16.25870 -15.59758 -15.18759 -15.06704 -14.79763 -14.33605 -14.18927 -14.15871 -13.89538 -13.49400 -13.37140 -13.32791 -12.97146 -12.83166 -12.67113 -12.62166 -12.49533 -12.19727 -11.93073 -11.82815 -11.53963 -11.41222 -11.21136 -10.95046 -10.75341 -10.59574 -10.35711 -10.33025 -10.17624 -9.70222 -9.45377 -9.23768 -8.95485 -8.61905 -8.38296 -8.23605 -7.32772 -5.99942 -4.03437 1.97808 2.11609 2.44435 3.13845 3.33808 3.39774 3.45532 3.55953 3.82550 3.89313 4.42497 4.55876 4.60618 4.66043 4.68994 4.73824 4.85082 4.93769 5.05457 5.14837 5.25073 5.26807 5.29718 5.33957 5.34150 5.44655 5.45544 5.53387 5.64084 5.66494 5.80924 5.96880 6.06321 6.11788 6.25014 6.27386 6.56819 6.68518 6.70904 6.73855 6.99289 7.02985 7.21375 7.26344 7.27912 7.55346 7.77115 7.81375 7.91015 7.96277 8.37255 8.50991 9.02110 9.60190 11.09568 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.002025 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.543403 B =13824.278675 C =14537.351617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.530 5.530 3 C 0.054 3.946 4 C 0.080 3.920 5 O -0.558 6.558 6 C 0.036 3.964 7 C 0.138 3.862 8 N -0.633 5.633 9 C 0.079 3.921 10 C 0.702 3.298 11 O -0.568 6.568 12 N -0.681 5.681 13 C 0.119 3.881 14 C -0.116 4.116 15 C -0.109 4.109 16 C -0.044 4.044 17 C 0.048 3.952 18 C -0.509 4.509 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.109 4.109 27 C -0.144 4.144 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.373 0.627 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.400 0.600 44 H 0.128 0.872 45 H 0.120 0.880 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.261 0.739 49 H 0.122 0.878 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.817 11.126 -21.492 31.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.254 5.254 3 C -0.075 4.075 4 C 0.002 3.998 5 O -0.362 6.362 6 C -0.093 4.093 7 C 0.014 3.986 8 N -0.372 5.372 9 C -0.065 4.065 10 C 0.404 3.596 11 O -0.443 6.443 12 N -0.330 5.330 13 C 0.026 3.974 14 C -0.136 4.136 15 C -0.128 4.128 16 C -0.044 4.044 17 C 0.011 3.989 18 C -0.548 4.548 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.127 4.127 27 C -0.165 4.165 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.219 0.781 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.236 0.764 44 H 0.146 0.854 45 H 0.138 0.862 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.071 0.929 49 H 0.140 0.860 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 18.420 11.200 -21.763 30.633 hybrid contribution 0.024 -0.234 0.514 0.565 sum 18.444 10.966 -21.249 30.199 Atomic orbital electron populations 1.22468 0.86768 1.02839 1.00702 1.61903 1.08125 1.12974 1.42421 1.22156 0.94572 0.90114 1.00624 1.22210 0.95896 0.96812 0.84919 1.86612 1.30086 1.86994 1.32527 1.22553 1.00184 0.94532 0.92038 1.21267 1.00920 0.89353 0.87030 1.47007 1.16602 1.57251 1.16300 1.21747 0.83332 0.99039 1.02358 1.15895 0.84150 0.79725 0.79833 1.90945 1.18900 1.53429 1.81065 1.42605 1.15380 1.58029 1.16957 1.17319 0.96385 0.94707 0.88963 1.21139 0.96819 0.99075 0.96550 1.21012 0.98819 0.97757 0.95213 1.20708 0.93758 0.92228 0.97745 1.18346 0.92969 0.97651 0.89901 1.21085 1.01509 1.38425 0.93746 0.92455 1.25012 0.98501 0.95996 0.94886 1.69957 1.34892 1.47603 1.00979 0.86545 0.82842 0.79718 0.78682 1.20620 1.21192 1.19777 1.20858 0.95835 0.99514 0.96536 1.20716 1.02430 0.94706 0.98646 0.95317 0.91307 0.90704 0.89840 0.93338 0.93471 0.93724 0.78120 0.94187 0.90893 0.89648 0.89457 0.92310 0.90660 0.91617 0.76379 0.85377 0.86189 0.95328 0.95346 0.92910 0.86048 0.86949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.37 60.06 0.56 0.75 16 2 N -0.53 -4.85 4.67 -242.92 -1.14 -5.99 16 3 C 0.05 0.41 5.35 -3.82 -0.02 0.39 16 4 C 0.08 0.50 7.12 37.16 0.26 0.76 16 5 O -0.56 -4.09 13.58 -35.23 -0.48 -4.57 16 6 C 0.04 0.34 5.15 -3.83 -0.02 0.32 16 7 C 0.14 1.35 5.34 -4.05 -0.02 1.33 16 8 N -0.63 -6.48 2.87 -187.35 -0.54 -7.01 16 9 C 0.08 0.48 10.25 59.85 0.61 1.09 16 10 C 0.70 10.06 8.13 -86.92 -0.71 9.35 16 11 O -0.57 -10.47 13.36 5.29 0.07 -10.40 16 12 N -0.68 -9.06 5.22 -14.22 -0.07 -9.14 16 13 C 0.12 2.02 6.30 -83.69 -0.53 1.50 16 14 C -0.12 -2.22 8.70 -39.40 -0.34 -2.56 16 15 C -0.11 -2.30 9.69 -39.61 -0.38 -2.68 16 16 C -0.04 -0.98 5.07 -104.59 -0.53 -1.51 16 17 C 0.05 1.26 5.10 -29.04 -0.15 1.11 16 18 C -0.51 -14.60 9.09 -34.44 -0.31 -14.92 16 19 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 22 Si 0.89 22.06 29.54 -169.99 -5.02 17.03 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.11 -2.13 9.69 -39.61 -0.38 -2.52 16 27 C -0.14 -2.41 9.97 -39.40 -0.39 -2.80 16 28 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 30 H 0.07 0.72 6.27 -51.93 -0.33 0.39 16 31 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 32 H 0.05 0.35 8.11 -51.93 -0.42 -0.07 16 33 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.04 0.26 6.29 -51.93 -0.33 -0.07 16 35 H 0.37 1.07 9.12 45.56 0.42 1.49 16 36 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.07 0.59 6.10 -51.92 -0.32 0.28 16 38 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.09 1.05 5.74 -51.93 -0.30 0.75 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 42 H 0.07 0.32 6.30 -51.93 -0.33 0.00 16 43 H 0.40 3.82 6.52 -40.82 -0.27 3.56 16 44 H 0.13 2.48 6.23 -52.49 -0.33 2.15 16 45 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 46 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 47 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 49 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 50 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 405.53 15.07 6.11 6.11 Total: -1.00 -35.48 405.53 -9.99 -45.47 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.21 Total: 3.36 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -2.45 Total: -8.83 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -1.01 Total: -48.18 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.41 Total: -14.97 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.48 -9.99 -45.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467297330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.661 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds