Wall clock time and date at job start Tue Mar 31 2020 18:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 110.99612 * 2 1 4 4 C 1.53001 * 109.46763 * 191.45043 * 3 2 1 5 5 O 1.42903 * 109.47175 * 63.29032 * 4 3 2 6 6 C 1.46900 * 110.99524 * 123.95006 * 2 1 3 7 7 C 1.52994 * 109.47279 * 66.05258 * 6 2 1 8 8 N 1.46499 * 109.47201 * 179.97438 * 7 6 2 9 9 C 1.46504 * 120.00145 * 269.99603 * 8 7 6 10 10 C 1.34775 * 120.00290 * 89.99747 * 8 7 6 11 11 O 1.21588 * 120.00069 * 359.97438 * 10 8 7 12 12 N 1.34773 * 120.00276 * 180.02562 * 10 8 7 13 13 C 1.39954 * 120.00326 * 184.88379 * 12 10 8 14 14 C 1.38867 * 120.06609 * 324.71707 * 13 12 10 15 15 C 1.38111 * 119.92946 * 180.02562 * 14 13 12 16 16 C 1.38278 * 120.06991 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.93017 * 179.97438 * 16 15 14 18 18 C 1.50693 * 109.47316 * 90.00034 * 17 16 15 19 19 H 1.08004 * 120.00219 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00009 * 180.27497 * 18 17 16 21 21 N 1.31511 * 119.99850 * 359.72246 * 20 18 17 22 22 Si 1.86808 * 120.00090 * 179.72147 * 20 18 17 23 23 H 1.48500 * 109.46688 * 89.99852 * 22 20 18 24 24 H 1.48496 * 109.46922 * 210.00076 * 22 20 18 25 25 H 1.48499 * 109.46941 * 330.00347 * 22 20 18 26 26 C 1.38279 * 120.14041 * 0.22855 * 16 15 14 27 27 C 1.38117 * 120.06880 * 359.49563 * 26 16 15 28 28 H 1.09000 * 109.47189 * 300.64014 * 1 2 3 29 29 H 1.09000 * 109.46864 * 60.64390 * 1 2 3 30 30 H 1.09001 * 109.47371 * 180.63915 * 1 2 3 31 31 H 1.09000 * 109.47276 * 311.44777 * 3 2 1 32 32 H 1.08996 * 109.47569 * 71.45328 * 3 2 1 33 33 H 1.08998 * 109.47071 * 183.28949 * 4 3 2 34 34 H 1.09002 * 109.47406 * 303.28876 * 4 3 2 35 35 H 0.96702 * 113.99901 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.47448 * 306.04616 * 6 2 1 37 37 H 1.09008 * 109.46383 * 186.04615 * 6 2 1 38 38 H 1.08997 * 109.47404 * 59.99331 * 7 6 2 39 39 H 1.09007 * 109.47176 * 299.99512 * 7 6 2 40 40 H 1.09003 * 109.46880 * 270.00307 * 9 8 7 41 41 H 1.09000 * 109.46692 * 29.99842 * 9 8 7 42 42 H 1.08996 * 109.47451 * 149.99631 * 9 8 7 43 43 H 0.96998 * 120.00063 * 4.87463 * 12 10 8 44 44 H 1.07998 * 120.03274 * 0.02562 * 14 13 12 45 45 H 1.07998 * 119.96809 * 180.02562 * 15 14 13 46 46 H 1.09000 * 109.47239 * 329.99662 * 17 16 15 47 47 H 1.09005 * 109.46665 * 209.99857 * 17 16 15 48 48 H 0.97001 * 120.00003 * 179.97438 * 21 20 18 49 49 H 1.08001 * 119.96679 * 179.72236 * 26 16 15 50 50 H 1.07997 * 120.03423 * 180.25229 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 3.4980 1.3409 -0.2864 5 8 3.7229 0.8131 -1.5952 6 6 1.9953 -0.7659 1.1377 7 6 1.6314 -2.2425 0.9705 8 7 2.1569 -3.0064 2.1047 9 6 3.5019 -3.5836 2.0391 10 6 1.4030 -3.1784 3.2086 11 8 0.2869 -2.6991 3.2633 12 7 1.8865 -3.8807 4.2523 13 6 1.0684 -4.1466 5.3562 14 6 0.1356 -3.2062 5.7733 15 6 -0.6700 -3.4713 6.8634 16 6 -0.5481 -4.6713 7.5395 17 6 -1.4284 -4.9571 8.7289 18 6 -2.6927 -5.6346 8.2669 19 1 -2.8440 -5.8376 7.2170 20 6 -3.6591 -5.9897 9.1840 21 7 -3.4752 -5.7421 10.4624 22 14 -5.2298 -6.8226 8.6104 23 1 -5.0387 -8.2952 8.6136 24 1 -6.3423 -6.4658 9.5270 25 1 -5.5568 -6.3688 7.2348 26 6 0.3834 -5.6076 7.1298 27 6 1.1880 -5.3509 6.0370 28 1 -0.3633 0.5237 0.8842 29 1 -0.3633 0.5038 -0.8957 30 1 -0.3634 -1.0276 0.0115 31 1 1.4905 1.9544 -0.7703 32 1 1.8204 1.8278 0.9742 33 1 3.8995 2.3526 -0.2287 34 1 3.9956 0.7101 0.4502 35 1 4.6559 0.7649 -1.8449 36 1 1.5610 -0.3872 2.0628 37 1 3.0797 -0.6610 1.1757 38 1 2.0658 -2.6213 0.0453 39 1 0.5471 -2.3475 0.9324 40 1 3.4458 -4.5892 1.6224 41 1 4.1333 -2.9619 1.4044 42 1 3.9271 -3.6288 3.0417 43 1 2.8016 -4.2021 4.2383 44 1 0.0402 -2.2686 5.2459 45 1 -1.3960 -2.7406 7.1881 46 1 -1.6793 -4.0213 9.2284 47 1 -0.8996 -5.6095 9.4238 48 1 -4.1552 -5.9916 11.1075 49 1 0.4793 -6.5421 7.6627 50 1 1.9126 -6.0842 5.7150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467297330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:36 Heat of formation + Delta-G solvation = -60.819784 kcal Electronic energy + Delta-G solvation = -28462.171623 eV Core-core repulsion = 24488.913640 eV Total energy + Delta-G solvation = -3973.257983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82632 -39.99064 -39.15604 -37.27092 -36.40242 -36.29422 -34.96335 -32.37234 -31.75614 -31.15746 -29.99185 -28.45583 -27.62553 -26.18273 -25.06995 -23.97490 -23.69668 -22.09721 -21.58911 -20.90363 -19.45556 -18.52185 -18.35178 -18.32441 -17.27903 -17.08830 -16.82672 -16.41322 -16.13662 -15.94135 -15.87363 -15.44826 -14.97633 -14.62864 -14.58591 -14.52009 -14.33000 -14.17848 -14.09695 -13.86106 -13.61069 -13.37073 -13.30929 -13.30254 -13.04994 -12.85556 -12.60449 -12.52861 -12.46824 -12.16986 -12.04315 -11.72046 -11.62146 -11.54800 -11.16207 -10.90558 -10.79042 -10.60123 -9.81479 -9.75110 -9.36617 -8.83521 -8.18751 -6.33067 0.48787 0.58641 1.38057 1.39440 1.46533 1.51268 2.00794 2.39479 2.72832 3.00939 3.06848 3.09919 3.46729 3.85578 4.02387 4.06594 4.10981 4.17883 4.24357 4.26594 4.34685 4.39887 4.48500 4.53146 4.57111 4.62492 4.64425 4.68631 4.71329 4.74769 4.80041 4.88407 4.89271 4.92166 5.04651 5.14266 5.27761 5.33340 5.41059 5.48310 5.50739 5.62754 5.75916 5.85036 5.97733 6.02310 6.09584 6.13894 6.27258 6.79210 6.82516 7.02147 7.34986 7.43275 8.88716 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.002025 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.543403 B =13824.278675 C =14537.351617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.533 5.533 3 C 0.047 3.953 4 C 0.083 3.917 5 O -0.580 6.580 6 C 0.047 3.953 7 C 0.140 3.860 8 N -0.623 5.623 9 C 0.069 3.931 10 C 0.695 3.305 11 O -0.616 6.616 12 N -0.667 5.667 13 C 0.135 3.865 14 C -0.123 4.123 15 C -0.122 4.122 16 C -0.076 4.076 17 C 0.058 3.942 18 C -0.528 4.528 19 H 0.050 0.950 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.964 3.036 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.271 1.271 26 C -0.112 4.112 27 C -0.127 4.127 28 H 0.016 0.984 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.391 0.609 36 H 0.011 0.989 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.422 0.578 44 H 0.123 0.877 45 H 0.107 0.893 46 H 0.001 0.999 47 H 0.010 0.990 48 H 0.266 0.734 49 H 0.128 0.872 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.327 10.141 -24.013 34.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.258 5.258 3 C -0.081 4.081 4 C 0.005 3.995 5 O -0.388 6.388 6 C -0.082 4.082 7 C 0.016 3.984 8 N -0.360 5.360 9 C -0.072 4.072 10 C 0.397 3.603 11 O -0.495 6.495 12 N -0.317 5.317 13 C 0.041 3.959 14 C -0.143 4.143 15 C -0.141 4.141 16 C -0.077 4.077 17 C 0.021 3.979 18 C -0.566 4.566 19 H 0.068 0.932 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.788 3.212 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.131 4.131 27 C -0.147 4.147 28 H 0.035 0.965 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.240 0.760 36 H 0.029 0.971 37 H 0.110 0.890 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.263 0.737 44 H 0.141 0.859 45 H 0.125 0.875 46 H 0.019 0.981 47 H 0.029 0.971 48 H 0.075 0.925 49 H 0.146 0.854 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 21.026 10.208 -24.327 33.735 hybrid contribution -0.631 0.143 1.177 1.343 sum 20.394 10.351 -23.150 32.542 Atomic orbital electron populations 1.22441 0.87271 1.02278 1.00629 1.61962 1.07788 1.13993 1.42025 1.22273 0.95948 0.89199 1.00683 1.22196 0.94549 0.98004 0.84761 1.86554 1.32116 1.87161 1.32924 1.22440 1.00941 0.94031 0.90811 1.21288 0.99633 0.89867 0.87599 1.47050 1.17721 1.56432 1.14749 1.22101 0.81025 1.00031 1.04080 1.16140 0.83956 0.79440 0.80782 1.90926 1.21305 1.55233 1.82060 1.42385 1.15973 1.57786 1.15601 1.17375 0.95366 0.93991 0.89195 1.21110 0.97526 0.99716 0.95968 1.20919 0.99543 0.97378 0.96239 1.20410 0.95474 0.94080 0.97692 1.18086 0.93103 0.95543 0.91175 1.21374 1.02896 1.38861 0.93483 0.93175 1.25905 1.01960 0.96551 0.94938 1.70071 1.36179 1.48460 1.02096 0.85470 0.78550 0.79027 0.78162 1.19294 1.20335 1.19596 1.20971 0.95538 0.99055 0.97515 1.21011 1.01920 0.95049 0.96723 0.96541 0.90248 0.91521 0.89988 0.93288 0.91677 0.93075 0.75972 0.97051 0.89029 0.87455 0.92134 0.90891 0.88285 0.90111 0.73738 0.85896 0.87468 0.98114 0.97144 0.92546 0.85378 0.82257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.37 127.69 1.20 1.61 16 2 N -0.53 -9.31 4.67 -922.47 -4.31 -13.63 16 3 C 0.05 0.67 5.35 86.30 0.46 1.13 16 4 C 0.08 0.85 7.12 71.98 0.51 1.36 16 5 O -0.58 -7.12 13.58 -148.98 -2.02 -9.14 16 6 C 0.05 0.82 5.15 86.30 0.44 1.26 16 7 C 0.14 2.54 5.34 86.38 0.46 3.00 16 8 N -0.62 -11.20 2.87 -864.92 -2.49 -13.69 16 9 C 0.07 0.53 10.25 127.77 1.31 1.84 16 10 C 0.69 18.84 8.13 179.06 1.45 20.29 16 11 O -0.62 -22.91 13.36 -3.99 -0.05 -22.96 16 12 N -0.67 -15.86 5.22 -317.18 -1.65 -17.51 16 13 C 0.14 4.35 6.30 38.14 0.24 4.59 16 14 C -0.12 -4.77 8.70 22.39 0.19 -4.58 16 15 C -0.12 -5.37 9.69 22.25 0.22 -5.15 16 16 C -0.08 -3.52 5.07 -19.84 -0.10 -3.62 16 17 C 0.06 3.20 5.10 29.10 0.15 3.35 16 18 C -0.53 -31.35 9.09 25.60 0.23 -31.12 16 19 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 20 C 0.00 0.27 5.46 84.66 0.46 0.73 16 21 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 22 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 26 C -0.11 -4.33 9.69 22.25 0.22 -4.11 16 27 C -0.13 -3.87 9.97 22.39 0.22 -3.65 16 28 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 30 H 0.07 1.34 6.27 -2.39 -0.01 1.32 16 31 H 0.08 1.18 8.04 -2.39 -0.02 1.16 16 32 H 0.05 0.69 8.11 -2.39 -0.02 0.67 16 33 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.05 0.45 6.29 -2.39 -0.02 0.43 16 35 H 0.39 1.23 9.12 -74.06 -0.68 0.55 16 36 H 0.01 0.26 8.12 -2.39 -0.02 0.24 16 37 H 0.09 1.24 6.10 -2.38 -0.01 1.23 16 38 H 0.11 1.50 8.07 -2.39 -0.02 1.49 16 39 H 0.06 1.46 5.74 -2.38 -0.01 1.45 16 40 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.10 0.37 8.07 -2.39 -0.02 0.35 16 42 H 0.08 0.40 6.30 -2.39 -0.02 0.39 16 43 H 0.42 6.22 6.52 -92.71 -0.60 5.62 16 44 H 0.12 4.91 6.23 -2.91 -0.02 4.90 16 45 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 46 H 0.00 0.03 8.08 -2.39 -0.02 0.01 16 47 H 0.01 0.59 8.08 -2.38 -0.02 0.57 16 48 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 49 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 50 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -80.45 405.53 -0.87 -81.32 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -0.33 Total: 17.52 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 7.67 Total: -13.06 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -8.17 Total: -101.52 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -2.08 Total: -32.11 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -80.45 -0.87 -81.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467297330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.501 kcal (2) G-P(sol) polarization free energy of solvation -80.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds