Wall clock time and date at job start Tue Mar 31 2020 18:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46494 * 120.00195 * 2 1 4 4 C 1.53002 * 109.46838 * 269.99663 * 3 2 1 5 5 H 1.08999 * 112.95928 * 74.66491 * 4 3 2 6 6 C 1.53936 * 113.75967 * 206.31065 * 4 3 2 7 7 C 1.53935 * 86.34140 * 138.03736 * 6 4 3 8 8 N 1.47961 * 113.75951 * 303.02021 * 4 3 2 9 9 C 1.46902 * 111.00080 * 108.10162 * 8 4 3 10 10 C 1.50697 * 109.47102 * 169.99989 * 9 8 4 11 11 O 1.21293 * 119.99819 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99734 * 179.97438 * 10 9 8 13 13 C 1.37106 * 119.99874 * 179.97438 * 12 10 9 14 14 H 1.07995 * 119.99847 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99846 * 180.02562 * 13 12 10 16 16 N 1.31410 * 119.99522 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00196 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46639 * 90.00439 * 17 15 13 19 19 H 1.48498 * 109.47051 * 210.00103 * 17 15 13 20 20 H 1.48501 * 109.47000 * 330.00187 * 17 15 13 21 21 C 1.34785 * 119.99723 * 179.97438 * 2 1 3 22 22 O 1.21275 * 119.99759 * 180.02562 * 21 2 1 23 23 C 1.50700 * 119.99907 * 0.02562 * 21 2 1 24 24 H 1.08999 * 115.55872 * 325.73353 * 23 21 2 25 25 C 1.53119 * 117.54362 * 111.52629 * 23 21 2 26 26 C 1.52462 * 59.85873 * 107.43253 * 25 23 21 27 27 C 1.53256 * 128.58268 * 242.40327 * 26 25 23 28 28 C 1.53889 * 86.98099 * 245.00445 * 27 26 25 29 29 C 1.53249 * 128.58891 * 117.59670 * 26 25 23 30 30 H 1.08999 * 109.47406 * 270.00366 * 1 2 3 31 31 H 1.09004 * 109.46886 * 30.00295 * 1 2 3 32 32 H 1.09007 * 109.47091 * 150.00358 * 1 2 3 33 33 H 1.09000 * 109.46975 * 29.99571 * 3 2 1 34 34 H 1.08996 * 109.47538 * 149.99888 * 3 2 1 35 35 H 1.08997 * 113.73840 * 252.39733 * 6 4 3 36 36 H 1.09004 * 113.73019 * 23.57764 * 6 4 3 37 37 H 1.09004 * 113.75508 * 90.59820 * 7 6 4 38 38 H 1.09002 * 113.76395 * 221.85238 * 7 6 4 39 39 H 1.08995 * 109.46822 * 289.99858 * 9 8 4 40 40 H 1.08998 * 109.47045 * 49.99683 * 9 8 4 41 41 H 0.97000 * 120.00264 * 359.97438 * 12 10 9 42 42 H 0.97008 * 119.99732 * 179.97438 * 16 15 13 43 43 H 1.09000 * 117.51851 * 359.97438 * 25 23 21 44 44 H 1.09006 * 117.51366 * 214.87422 * 25 23 21 45 45 H 1.09002 * 113.64750 * 359.54743 * 27 26 25 46 46 H 1.08999 * 113.64710 * 130.46206 * 27 26 25 47 47 H 1.09001 * 113.58643 * 89.64964 * 28 27 26 48 48 H 1.08993 * 113.59137 * 220.47432 * 28 27 26 49 49 H 1.09004 * 113.64908 * 229.44493 * 29 26 25 50 50 H 1.09004 * 113.64569 * 0.36484 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7102 -1.4425 5 1 1.5601 2.1002 -1.9319 6 6 3.6921 2.6081 -1.6063 7 6 3.9989 1.7856 -2.8708 8 7 3.1874 0.7120 -2.2505 9 6 2.3028 0.0804 -3.2388 10 6 3.1261 -0.7406 -4.1976 11 8 4.3311 -0.7940 -4.0703 12 7 2.5232 -1.4155 -5.1963 13 6 3.2722 -2.1621 -6.0689 14 1 4.3452 -2.2096 -5.9557 15 6 2.6508 -2.8575 -7.0989 16 7 3.3686 -3.5734 -7.9349 17 14 0.7948 -2.7758 -7.2943 18 1 0.4401 -1.6391 -8.1817 19 1 0.3038 -4.0430 -7.8929 20 1 0.1651 -2.5803 -5.9637 21 6 2.1389 -1.1673 0.0005 22 8 3.3516 -1.1673 0.0010 23 6 1.3853 -2.4724 0.0005 24 1 0.4462 -2.4731 0.5538 25 6 1.4631 -3.3349 -1.2622 26 6 2.2041 -3.7584 0.0011 27 6 3.7123 -3.9312 0.2120 28 6 3.4282 -5.4281 0.4284 29 6 2.0038 -5.0187 0.8497 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8901 -0.5138 33 1 1.6084 2.0283 0.5138 34 1 3.1499 1.1384 0.5138 35 1 3.4539 3.6522 -1.8093 36 1 4.4294 2.4871 -0.8127 37 1 3.5592 2.1967 -3.7795 38 1 5.0530 1.5328 -2.9853 39 1 1.5892 -0.5655 -2.7274 40 1 1.7648 0.8516 -3.7900 41 1 1.5595 -1.3731 -5.2978 42 1 2.9348 -4.0592 -8.6538 43 1 2.0592 -2.9583 -2.0934 44 1 0.5751 -3.9031 -1.5394 45 1 4.3050 -3.7230 -0.6787 46 1 4.0903 -3.4250 1.1003 47 1 3.4598 -6.0151 -0.4894 48 1 4.0124 -5.8707 1.2351 49 1 1.9060 -4.8166 1.9164 50 1 1.2258 -5.6816 0.4710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479250337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:42 Heat of formation + Delta-G solvation = 33.562813 kcal Electronic energy + Delta-G solvation = -31072.775243 eV Core-core repulsion = 27103.609996 eV Total energy + Delta-G solvation = -3969.165247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.53542 -39.71441 -38.27289 -37.66814 -35.23149 -33.89814 -33.54785 -31.66139 -30.72250 -29.07916 -26.56932 -25.77581 -25.53554 -24.48512 -23.41913 -22.95655 -22.34463 -19.46876 -19.32260 -19.06560 -18.28463 -18.03262 -17.03723 -16.21969 -15.99127 -15.77495 -15.46341 -15.06136 -14.87130 -14.79511 -14.45350 -14.21842 -13.80412 -13.47343 -13.14151 -13.02000 -12.67989 -12.56408 -12.43457 -12.38683 -12.20483 -12.12600 -11.85743 -11.65683 -11.56047 -11.40514 -11.29032 -11.27384 -11.12753 -10.73897 -10.58410 -10.47284 -10.20027 -9.94653 -9.93764 -9.61903 -9.51864 -9.30521 -8.77989 -8.36904 -8.17018 -8.11581 -6.26952 -3.77716 2.80442 3.00858 3.02535 3.06815 3.15098 3.80486 3.89881 4.04073 4.12629 4.37779 4.57538 4.71257 4.77366 4.80537 4.87771 4.88752 4.94895 5.04174 5.06405 5.13480 5.23691 5.29260 5.32831 5.48057 5.50368 5.53573 5.55781 5.60609 5.63290 5.73860 5.77112 5.82463 5.84720 5.90219 5.94638 5.95995 5.98542 6.15951 6.19498 6.39076 6.39541 6.48493 6.55187 6.58075 6.77200 7.29700 7.53756 7.63353 8.19373 8.53308 8.65339 9.00468 9.47225 9.89999 10.86556 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008374 B = 0.005115 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.863348 B = 5472.694648 C = 7350.110548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.619 5.619 3 C 0.141 3.859 4 C 0.004 3.996 5 H 0.072 0.928 6 C -0.137 4.137 7 C 0.017 3.983 8 N -0.424 5.424 9 C 0.013 3.987 10 C 0.456 3.544 11 O -0.553 6.553 12 N -0.595 5.595 13 C -0.300 4.300 14 H 0.119 0.881 15 C 0.041 3.959 16 N -0.883 5.883 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.270 1.270 21 C 0.544 3.456 22 O -0.495 6.495 23 C -0.182 4.182 24 H 0.115 0.885 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.082 4.082 28 C -0.142 4.142 29 C -0.098 4.098 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.368 0.632 42 H 0.272 0.728 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.081 0.919 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.943 7.016 18.546 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.355 5.355 3 C 0.018 3.982 4 C -0.107 4.107 5 H 0.090 0.910 6 C -0.175 4.175 7 C -0.112 4.112 8 N -0.146 5.146 9 C -0.120 4.120 10 C 0.241 3.759 11 O -0.433 6.433 12 N -0.236 5.236 13 C -0.429 4.429 14 H 0.136 0.864 15 C -0.161 4.161 16 N -0.524 5.524 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.202 1.202 20 H -0.196 1.196 21 C 0.331 3.669 22 O -0.367 6.367 23 C -0.203 4.203 24 H 0.133 0.867 25 C -0.159 4.159 26 C -0.123 4.123 27 C -0.119 4.119 28 C -0.180 4.180 29 C -0.136 4.136 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.200 0.800 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.085 0.915 49 H 0.100 0.900 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.105 6.244 18.759 21.766 hybrid contribution -2.489 0.638 -1.012 2.761 sum -11.594 6.882 17.746 22.287 Atomic orbital electron populations 1.21732 0.80310 1.03014 1.01213 1.47631 1.06224 1.05896 1.75714 1.21314 0.97781 0.84294 0.94817 1.23979 0.96462 0.93702 0.96551 0.91008 1.23366 0.97136 0.97592 0.99447 1.23730 1.01598 0.90857 0.94987 1.68565 1.13172 1.18370 1.14538 1.22452 0.96107 0.98714 0.94702 1.19597 0.88766 0.84310 0.83180 1.90579 1.14180 1.65197 1.73360 1.42221 1.08078 1.45360 1.27910 1.19413 0.94714 1.23138 1.05617 0.86370 1.25006 0.98135 0.96821 0.96187 1.69624 1.35481 1.30602 1.16685 0.86712 0.85650 0.78729 0.78536 1.19771 1.20194 1.19579 1.19508 0.87537 0.83681 0.76167 1.90747 1.13214 1.86477 1.46254 1.22184 1.01785 0.90822 1.05558 0.86691 1.22847 1.02071 1.00019 0.90920 1.22221 0.96666 0.93130 1.00315 1.22297 0.92799 0.94116 1.02709 1.22843 0.96252 0.97372 1.01485 1.22529 0.97775 0.94470 0.98786 0.93075 0.91518 0.91046 0.90770 0.89322 0.91390 0.89071 0.92048 0.88789 0.89977 0.93539 0.79990 0.91725 0.87366 0.87973 0.90688 0.89795 0.90010 0.91501 0.90007 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.01 59.85 0.60 1.25 16 2 N -0.62 -7.33 2.83 -181.57 -0.51 -7.84 16 3 C 0.14 1.59 5.59 -4.04 -0.02 1.57 16 4 C 0.00 0.05 3.58 -66.65 -0.24 -0.19 16 5 H 0.07 0.80 7.79 -51.93 -0.40 0.39 16 6 C -0.14 -1.63 7.84 -25.79 -0.20 -1.83 16 7 C 0.02 0.27 6.77 -2.64 -0.02 0.26 16 8 N -0.42 -7.29 4.66 -231.12 -1.08 -8.36 16 9 C 0.01 0.23 5.31 -4.98 -0.03 0.20 16 10 C 0.46 10.85 7.59 -10.99 -0.08 10.77 16 11 O -0.55 -15.55 15.14 5.55 0.08 -15.47 16 12 N -0.60 -14.58 5.09 -10.96 -0.06 -14.63 16 13 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 14 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 15 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 16 N -0.88 -26.18 13.96 55.50 0.77 -25.41 16 17 Si 0.88 19.61 27.74 -169.99 -4.71 14.89 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 21 C 0.54 8.16 6.77 -10.98 -0.07 8.09 16 22 O -0.49 -9.45 14.16 5.56 0.08 -9.37 16 23 C -0.18 -2.36 4.80 -91.98 -0.44 -2.80 16 24 H 0.12 1.17 7.26 -51.93 -0.38 0.79 16 25 C -0.12 -1.74 10.24 -26.94 -0.28 -2.02 16 26 C -0.12 -1.69 2.88 -154.80 -0.45 -2.14 16 27 C -0.08 -1.24 6.46 -26.14 -0.17 -1.41 16 28 C -0.14 -1.73 8.10 -25.70 -0.21 -1.94 16 29 C -0.10 -1.09 8.10 -26.04 -0.21 -1.30 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.07 0.57 6.64 -51.93 -0.34 0.22 16 33 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 34 H 0.09 1.18 7.15 -51.93 -0.37 0.81 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.09 7.92 -51.93 -0.41 0.68 16 37 H 0.06 0.96 7.78 -51.93 -0.40 0.56 16 38 H 0.09 1.74 8.10 -51.93 -0.42 1.31 16 39 H 0.08 1.40 7.91 -51.93 -0.41 0.99 16 40 H 0.05 0.74 7.69 -51.93 -0.40 0.34 16 41 H 0.37 7.96 5.76 -40.82 -0.24 7.72 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 44 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.08 1.27 8.05 -51.93 -0.42 0.86 16 47 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 401.17 15.07 6.05 6.05 Total: -1.00 -35.53 401.17 -9.84 -45.37 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -8.40 Total: 14.02 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -2.07 Total: 0.75 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.87 Total: -56.25 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: 0.16 Total: -24.84 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.71 Total: 14.89 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.53 -9.84 -45.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479250337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.937 kcal (2) G-P(sol) polarization free energy of solvation -35.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds