Wall clock time and date at job start Tue Mar 31 2020 18:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46494 * 120.00195 * 2 1 4 4 C 1.53002 * 109.46838 * 269.99663 * 3 2 1 5 5 H 1.08999 * 112.95928 * 74.66491 * 4 3 2 6 6 C 1.53936 * 113.75967 * 206.31065 * 4 3 2 7 7 C 1.53935 * 86.34140 * 138.03736 * 6 4 3 8 8 N 1.47961 * 113.75951 * 303.02021 * 4 3 2 9 9 C 1.46902 * 111.00080 * 108.10162 * 8 4 3 10 10 C 1.50697 * 109.47102 * 169.99989 * 9 8 4 11 11 O 1.21293 * 119.99819 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99734 * 179.97438 * 10 9 8 13 13 C 1.37106 * 119.99874 * 179.97438 * 12 10 9 14 14 H 1.07995 * 119.99847 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99846 * 180.02562 * 13 12 10 16 16 N 1.31410 * 119.99522 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00196 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46639 * 90.00439 * 17 15 13 19 19 H 1.48498 * 109.47051 * 210.00103 * 17 15 13 20 20 H 1.48501 * 109.47000 * 330.00187 * 17 15 13 21 21 C 1.34785 * 119.99723 * 179.97438 * 2 1 3 22 22 O 1.21275 * 119.99759 * 180.02562 * 21 2 1 23 23 C 1.50700 * 119.99907 * 0.02562 * 21 2 1 24 24 H 1.08999 * 115.55872 * 325.73353 * 23 21 2 25 25 C 1.53119 * 117.54362 * 111.52629 * 23 21 2 26 26 C 1.52462 * 59.85873 * 107.43253 * 25 23 21 27 27 C 1.53256 * 128.58268 * 242.40327 * 26 25 23 28 28 C 1.53889 * 86.98099 * 245.00445 * 27 26 25 29 29 C 1.53249 * 128.58891 * 117.59670 * 26 25 23 30 30 H 1.08999 * 109.47406 * 270.00366 * 1 2 3 31 31 H 1.09004 * 109.46886 * 30.00295 * 1 2 3 32 32 H 1.09007 * 109.47091 * 150.00358 * 1 2 3 33 33 H 1.09000 * 109.46975 * 29.99571 * 3 2 1 34 34 H 1.08996 * 109.47538 * 149.99888 * 3 2 1 35 35 H 1.08997 * 113.73840 * 252.39733 * 6 4 3 36 36 H 1.09004 * 113.73019 * 23.57764 * 6 4 3 37 37 H 1.09004 * 113.75508 * 90.59820 * 7 6 4 38 38 H 1.09002 * 113.76395 * 221.85238 * 7 6 4 39 39 H 1.08995 * 109.46822 * 289.99858 * 9 8 4 40 40 H 1.08998 * 109.47045 * 49.99683 * 9 8 4 41 41 H 0.97000 * 120.00264 * 359.97438 * 12 10 9 42 42 H 0.97008 * 119.99732 * 179.97438 * 16 15 13 43 43 H 1.09000 * 117.51851 * 359.97438 * 25 23 21 44 44 H 1.09006 * 117.51366 * 214.87422 * 25 23 21 45 45 H 1.09002 * 113.64750 * 359.54743 * 27 26 25 46 46 H 1.08999 * 113.64710 * 130.46206 * 27 26 25 47 47 H 1.09001 * 113.58643 * 89.64964 * 28 27 26 48 48 H 1.08993 * 113.59137 * 220.47432 * 28 27 26 49 49 H 1.09004 * 113.64908 * 229.44493 * 29 26 25 50 50 H 1.09004 * 113.64569 * 0.36484 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7102 -1.4425 5 1 1.5601 2.1002 -1.9319 6 6 3.6921 2.6081 -1.6063 7 6 3.9989 1.7856 -2.8708 8 7 3.1874 0.7120 -2.2505 9 6 2.3028 0.0804 -3.2388 10 6 3.1261 -0.7406 -4.1976 11 8 4.3311 -0.7940 -4.0703 12 7 2.5232 -1.4155 -5.1963 13 6 3.2722 -2.1621 -6.0689 14 1 4.3452 -2.2096 -5.9557 15 6 2.6508 -2.8575 -7.0989 16 7 3.3686 -3.5734 -7.9349 17 14 0.7948 -2.7758 -7.2943 18 1 0.4401 -1.6391 -8.1817 19 1 0.3038 -4.0430 -7.8929 20 1 0.1651 -2.5803 -5.9637 21 6 2.1389 -1.1673 0.0005 22 8 3.3516 -1.1673 0.0010 23 6 1.3853 -2.4724 0.0005 24 1 0.4462 -2.4731 0.5538 25 6 1.4631 -3.3349 -1.2622 26 6 2.2041 -3.7584 0.0011 27 6 3.7123 -3.9312 0.2120 28 6 3.4282 -5.4281 0.4284 29 6 2.0038 -5.0187 0.8497 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8901 -0.5138 33 1 1.6084 2.0283 0.5138 34 1 3.1499 1.1384 0.5138 35 1 3.4539 3.6522 -1.8093 36 1 4.4294 2.4871 -0.8127 37 1 3.5592 2.1967 -3.7795 38 1 5.0530 1.5328 -2.9853 39 1 1.5892 -0.5655 -2.7274 40 1 1.7648 0.8516 -3.7900 41 1 1.5595 -1.3731 -5.2978 42 1 2.9348 -4.0592 -8.6538 43 1 2.0592 -2.9583 -2.0934 44 1 0.5751 -3.9031 -1.5394 45 1 4.3050 -3.7230 -0.6787 46 1 4.0903 -3.4250 1.1003 47 1 3.4598 -6.0151 -0.4894 48 1 4.0124 -5.8707 1.2351 49 1 1.9060 -4.8166 1.9164 50 1 1.2258 -5.6816 0.4710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479250337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:41 Heat of formation + Delta-G solvation = 7.080358 kcal Electronic energy + Delta-G solvation = -31073.923608 eV Core-core repulsion = 27103.609996 eV Total energy + Delta-G solvation = -3970.313612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.67058 -40.94572 -39.79071 -39.07505 -36.28385 -35.99762 -34.61595 -33.81071 -32.10624 -30.08121 -27.61106 -27.34657 -26.58941 -25.57511 -25.12549 -24.01543 -23.36800 -21.34750 -20.56389 -20.30318 -20.06233 -19.08136 -18.05752 -17.81351 -17.18318 -16.99254 -16.88088 -16.56380 -16.14335 -15.99723 -15.76917 -15.47442 -15.26841 -14.98177 -14.64047 -14.38039 -14.05049 -13.93270 -13.70576 -13.55092 -13.21239 -13.15027 -13.08835 -12.97715 -12.82080 -12.65806 -12.47142 -12.46166 -12.29801 -12.28173 -12.01895 -11.86791 -11.62525 -11.52548 -11.26847 -11.01439 -10.67019 -10.47730 -10.44224 -10.28399 -9.71202 -9.27703 -8.44182 -6.05443 1.24879 1.31358 1.40649 1.69804 1.91250 2.09606 2.19663 2.66764 2.85139 3.10607 3.14641 3.39232 3.60406 3.67515 3.78325 3.82666 3.87802 3.94284 4.01853 4.08889 4.21585 4.23161 4.30776 4.38986 4.44127 4.47102 4.49586 4.57188 4.67317 4.77357 4.80109 4.82889 4.84673 4.85468 4.95286 4.99932 5.01806 5.04584 5.05182 5.16434 5.26799 5.38619 5.45980 5.48100 5.51145 5.80679 5.88830 6.13073 6.56166 6.59003 6.84756 7.34818 7.48690 7.93609 8.74007 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008374 B = 0.005115 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.863348 B = 5472.694648 C = 7350.110548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.614 5.614 3 C 0.140 3.860 4 C 0.015 3.985 5 H 0.103 0.897 6 C -0.114 4.114 7 C 0.004 3.996 8 N -0.463 5.463 9 C 0.031 3.969 10 C 0.452 3.548 11 O -0.609 6.609 12 N -0.590 5.590 13 C -0.327 4.327 14 H 0.048 0.952 15 C -0.014 4.014 16 N -0.935 5.935 17 Si 0.965 3.035 18 H -0.255 1.255 19 H -0.271 1.271 20 H -0.231 1.231 21 C 0.531 3.469 22 O -0.553 6.553 23 C -0.163 4.163 24 H 0.157 0.843 25 C -0.129 4.129 26 C -0.139 4.139 27 C -0.094 4.094 28 C -0.138 4.138 29 C -0.075 4.075 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.387 0.613 42 H 0.280 0.720 43 H 0.056 0.944 44 H 0.132 0.868 45 H 0.021 0.979 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.103 0.897 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.197 8.514 20.756 28.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.347 5.347 3 C 0.017 3.983 4 C -0.095 4.095 5 H 0.121 0.879 6 C -0.152 4.152 7 C -0.125 4.125 8 N -0.186 5.186 9 C -0.101 4.101 10 C 0.239 3.761 11 O -0.492 6.492 12 N -0.233 5.233 13 C -0.456 4.456 14 H 0.066 0.934 15 C -0.213 4.213 16 N -0.575 5.575 17 Si 0.784 3.216 18 H -0.179 1.179 19 H -0.196 1.196 20 H -0.155 1.155 21 C 0.319 3.681 22 O -0.429 6.429 23 C -0.184 4.184 24 H 0.174 0.826 25 C -0.167 4.167 26 C -0.140 4.140 27 C -0.132 4.132 28 C -0.175 4.175 29 C -0.112 4.112 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.139 0.861 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.223 0.777 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.150 0.850 45 H 0.040 0.960 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.121 0.879 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.412 7.780 20.991 27.179 hybrid contribution -0.321 0.204 -1.717 1.759 sum -15.733 7.984 19.274 26.130 Atomic orbital electron populations 1.22057 0.77304 1.04409 1.03222 1.47728 1.08061 1.04978 1.73963 1.21422 0.97598 0.85192 0.94137 1.24123 0.97209 0.91713 0.96472 0.87896 1.23230 0.96652 0.98994 0.96373 1.23717 0.99238 0.92159 0.97421 1.68581 1.14720 1.20358 1.14950 1.22305 0.95231 0.98748 0.93801 1.20842 0.88725 0.83451 0.83058 1.90556 1.17254 1.66791 1.74620 1.42005 1.08655 1.45065 1.27536 1.18937 0.92440 1.26027 1.08235 0.93385 1.26129 1.05599 0.95033 0.94512 1.69816 1.38946 1.31339 1.17439 0.85377 0.76195 0.79409 0.80625 1.17920 1.19597 1.15476 1.19997 0.87125 0.85340 0.75614 1.90741 1.15786 1.87403 1.48994 1.22282 1.02543 0.89278 1.04261 0.82572 1.22716 1.02573 1.01483 0.89887 1.22388 0.95344 0.95428 1.00834 1.22262 0.93911 0.97000 1.00029 1.22835 0.98027 0.94838 1.01825 1.22463 0.96832 0.92489 0.99383 0.90716 0.89199 0.90680 0.86125 0.92221 0.87672 0.89769 0.91555 0.93205 0.88547 0.90171 0.77720 0.91092 0.92493 0.85009 0.96005 0.90488 0.90904 0.89688 0.87890 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 10.01 127.77 1.28 2.04 16 2 N -0.61 -12.62 2.83 -846.75 -2.40 -15.02 16 3 C 0.14 2.72 5.59 86.38 0.48 3.20 16 4 C 0.01 0.32 3.58 45.02 0.16 0.48 16 5 H 0.10 1.69 7.79 -2.39 -0.02 1.67 16 6 C -0.11 -2.53 7.84 31.24 0.25 -2.28 16 7 C 0.00 0.12 6.77 86.36 0.58 0.71 16 8 N -0.46 -15.99 4.66 -885.13 -4.13 -20.12 16 9 C 0.03 1.09 5.31 85.56 0.45 1.55 16 10 C 0.45 22.57 7.59 87.66 0.67 23.23 16 11 O -0.61 -37.52 15.14 -3.07 -0.05 -37.57 16 12 N -0.59 -29.77 5.09 -306.99 -1.56 -31.33 16 13 C -0.33 -20.15 10.16 84.04 0.85 -19.29 16 14 H 0.05 3.55 7.39 -2.91 -0.02 3.53 16 15 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 16 N -0.93 -57.96 13.96 21.66 0.30 -57.66 16 17 Si 0.96 39.58 27.74 68.60 1.90 41.48 16 18 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 21 C 0.53 15.57 6.77 87.66 0.59 16.16 16 22 O -0.55 -22.33 14.16 -3.01 -0.04 -22.37 16 23 C -0.16 -3.89 4.80 -11.68 -0.06 -3.95 16 24 H 0.16 2.41 7.26 -2.39 -0.02 2.39 16 25 C -0.13 -3.65 10.24 30.46 0.31 -3.33 16 26 C -0.14 -3.80 2.88 -52.37 -0.15 -3.95 16 27 C -0.09 -3.10 6.46 30.98 0.20 -2.90 16 28 C -0.14 -3.38 8.10 31.26 0.25 -3.13 16 29 C -0.07 -1.47 8.10 31.04 0.25 -1.22 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.60 8.07 -2.39 -0.02 0.58 16 32 H 0.07 0.78 6.64 -2.38 -0.02 0.77 16 33 H 0.12 1.28 8.07 -2.39 -0.02 1.26 16 34 H 0.06 1.54 7.15 -2.39 -0.02 1.53 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.99 7.92 -2.38 -0.02 1.97 16 37 H 0.07 2.08 7.78 -2.38 -0.02 2.06 16 38 H 0.05 2.04 8.10 -2.39 -0.02 2.02 16 39 H 0.10 3.13 7.91 -2.39 -0.02 3.11 16 40 H 0.08 2.30 7.69 -2.39 -0.02 2.28 16 41 H 0.39 16.18 5.76 -92.71 -0.53 15.65 16 42 H 0.28 15.75 8.31 -92.70 -0.77 14.98 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 44 H 0.13 2.85 8.14 -2.38 -0.02 2.83 16 45 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 2.55 8.05 -2.39 -0.02 2.54 16 47 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -92.32 401.17 0.97 -91.35 By element: Atomic # 1 Polarization: 43.92 SS G_CDS: 0.34 Total: 44.26 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 6.60 Total: 6.97 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -7.79 Total: -124.12 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: -0.09 Total: -59.94 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.90 Total: 41.48 kcal Total: -92.32 0.97 -91.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479250337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.430 kcal (2) G-P(sol) polarization free energy of solvation -92.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds