Wall clock time and date at job start Tue Mar 31 2020 18:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.08994 * 112.95661 * 72.86347 * 4 3 2 6 6 C 1.53937 * 113.75856 * 204.51029 * 4 3 2 7 7 C 1.53931 * 86.34278 * 138.04002 * 6 4 3 8 8 N 1.47961 * 86.18052 * 336.27538 * 7 6 4 9 9 C 1.46894 * 111.00081 * 137.58320 * 8 7 6 10 10 C 1.50696 * 109.47159 * 70.64387 * 9 8 7 11 11 O 1.21293 * 119.99832 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00391 * 179.97438 * 10 9 8 13 13 C 1.37099 * 120.00324 * 179.97438 * 12 10 9 14 14 H 1.08000 * 120.00005 * 0.02562 * 13 12 10 15 15 C 1.38947 * 119.99894 * 180.02562 * 13 12 10 16 16 N 1.31410 * 120.00262 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99737 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47012 * 90.00116 * 17 15 13 19 19 H 1.48502 * 109.47077 * 210.00184 * 17 15 13 20 20 H 1.48499 * 109.47664 * 330.00312 * 17 15 13 21 21 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 22 22 O 1.21279 * 120.00031 * 180.02562 * 21 2 1 23 23 C 1.50699 * 119.99563 * 0.02562 * 21 2 1 24 24 H 1.08994 * 115.56215 * 34.41365 * 23 21 2 25 25 C 1.53124 * 117.51278 * 248.67473 * 23 21 2 26 26 C 1.52464 * 117.51078 * 180.14834 * 23 21 2 27 27 C 1.53257 * 128.58541 * 349.84899 * 26 23 21 28 28 C 1.53891 * 86.88187 * 194.88995 * 27 26 23 29 29 C 1.53262 * 128.58592 * 225.04738 * 26 23 21 30 30 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 31 31 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 32 32 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 33 33 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 34 34 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 35 35 H 1.09006 * 113.72646 * 252.39819 * 6 4 3 36 36 H 1.08996 * 113.73539 * 23.67234 * 6 4 3 37 37 H 1.09001 * 113.76403 * 90.59570 * 7 6 4 38 38 H 1.08998 * 113.75610 * 221.96365 * 7 6 4 39 39 H 1.09007 * 109.47323 * 190.64146 * 9 8 7 40 40 H 1.09001 * 109.47429 * 310.64535 * 9 8 7 41 41 H 0.97000 * 119.99910 * 0.02562 * 12 10 9 42 42 H 0.97005 * 120.00027 * 179.97438 * 16 15 13 43 43 H 1.09000 * 117.51287 * 0.02562 * 25 23 21 44 44 H 1.09000 * 117.51339 * 145.10440 * 25 23 21 45 45 H 1.08998 * 113.64443 * 309.38147 * 27 26 23 46 46 H 1.08997 * 113.64539 * 80.39098 * 27 26 23 47 47 H 1.09005 * 113.58241 * 270.38930 * 28 27 26 48 48 H 1.08998 * 113.66190 * 139.58294 * 28 27 26 49 49 H 1.08999 * 113.64487 * 279.61235 * 29 26 23 50 50 H 1.09003 * 113.64424 * 50.60978 * 29 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 3.2145 1.1121 1.9420 6 6 2.6540 3.2284 1.5999 7 6 1.7731 3.1154 2.8572 8 7 1.2178 1.8920 2.2375 9 6 1.0688 0.8199 3.2306 10 6 -0.0528 1.1638 4.1765 11 8 -0.6672 2.2003 4.0373 12 7 -0.3732 0.3197 5.1772 13 6 -1.3933 0.6328 6.0381 14 1 -1.9403 1.5557 5.9142 15 6 -1.7232 -0.2372 7.0700 16 7 -1.0572 -1.3599 7.2211 17 14 -3.1134 0.1892 8.2425 18 1 -4.3912 -0.3505 7.7122 19 1 -2.8386 -0.4079 9.5742 20 1 -3.2158 1.6649 8.3733 21 6 2.1389 -1.1672 0.0005 22 8 3.3517 -1.1672 0.0010 23 6 1.3854 -2.4723 0.0005 24 1 0.4480 -2.4741 -0.5555 25 6 1.4589 -3.3315 1.2658 26 6 2.2043 -3.7583 0.0046 27 6 3.7129 -3.9315 -0.2023 28 6 3.4269 -5.4286 -0.4147 29 6 2.0060 -5.0205 -0.8418 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 -0.8900 -0.5138 32 1 -0.3633 0.8900 -0.5139 33 1 3.1499 1.1384 -0.5137 34 1 1.6085 2.0284 -0.5138 35 1 3.6846 3.5145 1.8106 36 1 2.2037 3.8160 0.8000 37 1 2.3353 2.9280 3.7720 38 1 1.0486 3.9233 2.9597 39 1 0.8409 -0.1171 2.7224 40 1 1.9971 0.7126 3.7916 41 1 0.1184 -0.5090 5.2888 42 1 -1.2873 -1.9671 7.9418 43 1 2.0519 -2.9525 2.0981 44 1 0.5700 -3.8989 1.5415 45 1 4.0928 -3.4286 -1.0916 46 1 4.3034 -3.7214 0.6895 47 1 3.4550 -6.0128 0.5052 48 1 4.0122 -5.8762 -1.2179 49 1 1.2281 -5.6833 -0.4627 50 1 1.9107 -4.8206 -1.9091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479250338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:45 Heat of formation + Delta-G solvation = 22.439991 kcal Electronic energy + Delta-G solvation = -30129.960239 eV Core-core repulsion = 26160.312670 eV Total energy + Delta-G solvation = -3969.647569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.64473 -39.85333 -38.42780 -37.62192 -35.29199 -33.91870 -33.74805 -31.35321 -30.64517 -29.00289 -26.49113 -25.77664 -25.71260 -24.58183 -23.64153 -23.17274 -22.41747 -19.63615 -19.23191 -19.02686 -18.21518 -17.89273 -17.24974 -16.26635 -15.92265 -15.89111 -15.53183 -15.30638 -15.06380 -14.52992 -14.44974 -14.20109 -13.81887 -13.76080 -13.39058 -13.00557 -12.69010 -12.58492 -12.42214 -12.40176 -12.21045 -12.02056 -11.64467 -11.62855 -11.57021 -11.48786 -11.39878 -11.28747 -11.06693 -10.75021 -10.47101 -10.43526 -10.39959 -10.21623 -10.16358 -9.83325 -9.56922 -9.50603 -8.82413 -8.38927 -8.18526 -7.96581 -6.42159 -3.83032 2.53607 2.96008 3.16672 3.25388 3.31096 3.68910 3.89850 4.03892 4.19837 4.24548 4.50166 4.57225 4.65920 4.68959 4.76864 4.85301 4.92851 5.03000 5.20066 5.22228 5.24584 5.26754 5.39902 5.46525 5.54014 5.56565 5.60471 5.66697 5.67399 5.70316 5.75375 5.76332 5.79716 5.81781 5.88022 5.93737 6.05508 6.06992 6.12894 6.20221 6.28645 6.29047 6.39215 6.52997 6.71490 7.28173 7.45042 7.54255 8.05240 8.24452 8.61018 9.17487 9.53911 10.05784 10.75554 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009714 B = 0.003569 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.703484 B = 7844.169966 C =10028.937550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.140 3.860 4 C 0.008 3.992 5 H 0.078 0.922 6 C -0.140 4.140 7 C 0.020 3.980 8 N -0.442 5.442 9 C 0.015 3.985 10 C 0.445 3.555 11 O -0.579 6.579 12 N -0.565 5.565 13 C -0.298 4.298 14 H 0.102 0.898 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.929 3.071 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.543 3.457 22 O -0.542 6.542 23 C -0.180 4.180 24 H 0.122 0.878 25 C -0.117 4.117 26 C -0.128 4.128 27 C -0.081 4.081 28 C -0.142 4.142 29 C -0.099 4.099 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.042 -3.949 -16.530 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.335 5.335 3 C 0.017 3.983 4 C -0.103 4.103 5 H 0.096 0.904 6 C -0.178 4.178 7 C -0.109 4.109 8 N -0.165 5.165 9 C -0.118 4.118 10 C 0.230 3.770 11 O -0.463 6.463 12 N -0.202 5.202 13 C -0.428 4.428 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.756 3.244 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.195 1.195 21 C 0.332 3.668 22 O -0.419 6.419 23 C -0.201 4.201 24 H 0.140 0.860 25 C -0.154 4.154 26 C -0.129 4.129 27 C -0.118 4.118 28 C -0.180 4.180 29 C -0.136 4.136 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.099 0.901 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.579 -3.383 -16.793 18.732 hybrid contribution 0.055 -0.484 1.373 1.457 sum 7.634 -3.868 -15.419 17.635 Atomic orbital electron populations 1.21860 0.78680 1.02169 1.03171 1.47662 1.07451 1.05440 1.72904 1.21386 0.97351 0.84482 0.95062 1.23954 0.93320 0.96654 0.96338 0.90447 1.23408 1.00099 0.94996 0.99341 1.23660 0.96631 0.95380 0.95194 1.68351 1.29757 1.02570 1.15778 1.22414 0.98044 0.96737 0.94555 1.19696 0.87234 0.86214 0.83818 1.90516 1.55235 1.26210 1.74308 1.41877 1.32004 1.20311 1.25971 1.19683 1.10140 1.06248 1.06733 0.87991 1.25244 0.98927 0.95340 0.98366 1.69614 1.41107 1.10513 1.33062 0.85878 0.80603 0.78842 0.79090 1.20396 1.20939 1.19457 1.19653 0.87263 0.84267 0.75635 1.90656 1.13724 1.87281 1.50254 1.22196 1.02024 0.90307 1.05584 0.85990 1.22828 1.02121 1.00045 0.90440 1.22299 0.96356 0.93515 1.00682 1.22298 0.92756 0.94409 1.02372 1.22812 0.96614 0.97055 1.01489 1.22499 0.97677 0.94419 0.99047 0.91357 0.91734 0.91012 0.89811 0.90008 0.91256 0.89207 0.91896 0.88815 0.89708 0.93388 0.77598 0.91898 0.87956 0.87401 0.89652 0.91328 0.90119 0.91431 0.91229 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 9.95 59.85 0.60 1.56 16 2 N -0.60 -7.57 2.82 -181.57 -0.51 -8.08 16 3 C 0.14 1.69 5.59 -4.04 -0.02 1.67 16 4 C 0.01 0.11 3.57 -66.65 -0.24 -0.13 16 5 H 0.08 1.14 7.80 -51.93 -0.40 0.73 16 6 C -0.14 -1.66 7.84 -25.80 -0.20 -1.87 16 7 C 0.02 0.31 6.75 -2.77 -0.02 0.30 16 8 N -0.44 -7.22 5.32 -232.15 -1.24 -8.46 16 9 C 0.01 0.27 5.02 -4.98 -0.03 0.24 16 10 C 0.45 10.51 7.59 -10.99 -0.08 10.42 16 11 O -0.58 -15.50 15.13 5.55 0.08 -15.42 16 12 N -0.56 -14.35 5.29 -10.96 -0.06 -14.40 16 13 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 14 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 17 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 C 0.54 7.44 7.46 -10.98 -0.08 7.36 16 22 O -0.54 -8.77 14.72 5.56 0.08 -8.69 16 23 C -0.18 -2.09 5.28 -91.98 -0.49 -2.57 16 24 H 0.12 1.20 6.44 -51.93 -0.33 0.87 16 25 C -0.12 -1.35 10.24 -26.88 -0.28 -1.63 16 26 C -0.13 -1.41 2.88 -154.73 -0.45 -1.85 16 27 C -0.08 -0.91 6.47 -26.13 -0.17 -1.08 16 28 C -0.14 -1.26 8.08 -25.81 -0.21 -1.47 16 29 C -0.10 -0.88 8.10 -26.14 -0.21 -1.09 16 30 H 0.07 0.96 6.72 -51.93 -0.35 0.61 16 31 H 0.06 0.60 6.00 -51.93 -0.31 0.29 16 32 H 0.07 0.76 7.89 -51.93 -0.41 0.35 16 33 H 0.08 1.01 7.42 -51.93 -0.39 0.63 16 34 H 0.08 0.88 7.66 -51.93 -0.40 0.48 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.96 7.94 -51.93 -0.41 0.55 16 37 H 0.06 1.01 7.78 -51.93 -0.40 0.61 16 38 H 0.09 1.60 8.09 -51.93 -0.42 1.18 16 39 H 0.08 1.50 7.06 -51.93 -0.37 1.13 16 40 H 0.05 0.86 7.69 -51.93 -0.40 0.46 16 41 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 402.26 15.07 6.06 6.06 Total: -1.00 -31.92 402.26 -10.22 -42.14 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -8.23 Total: 12.69 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.11 Total: 1.93 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -1.08 Total: -54.69 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.17 Total: -24.11 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.92 -10.22 -42.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479250338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.576 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds