Wall clock time and date at job start Tue Mar 31 2020 18:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.08994 * 112.95661 * 72.86347 * 4 3 2 6 6 C 1.53937 * 113.75856 * 204.51029 * 4 3 2 7 7 C 1.53931 * 86.34278 * 138.04002 * 6 4 3 8 8 N 1.47961 * 86.18052 * 336.27538 * 7 6 4 9 9 C 1.46894 * 111.00081 * 137.58320 * 8 7 6 10 10 C 1.50696 * 109.47159 * 70.64387 * 9 8 7 11 11 O 1.21293 * 119.99832 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00391 * 179.97438 * 10 9 8 13 13 C 1.37099 * 120.00324 * 179.97438 * 12 10 9 14 14 H 1.08000 * 120.00005 * 0.02562 * 13 12 10 15 15 C 1.38947 * 119.99894 * 180.02562 * 13 12 10 16 16 N 1.31410 * 120.00262 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99737 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47012 * 90.00116 * 17 15 13 19 19 H 1.48502 * 109.47077 * 210.00184 * 17 15 13 20 20 H 1.48499 * 109.47664 * 330.00312 * 17 15 13 21 21 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 22 22 O 1.21279 * 120.00031 * 180.02562 * 21 2 1 23 23 C 1.50699 * 119.99563 * 0.02562 * 21 2 1 24 24 H 1.08994 * 115.56215 * 34.41365 * 23 21 2 25 25 C 1.53124 * 117.51278 * 248.67473 * 23 21 2 26 26 C 1.52464 * 117.51078 * 180.14834 * 23 21 2 27 27 C 1.53257 * 128.58541 * 349.84899 * 26 23 21 28 28 C 1.53891 * 86.88187 * 194.88995 * 27 26 23 29 29 C 1.53262 * 128.58592 * 225.04738 * 26 23 21 30 30 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 31 31 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 32 32 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 33 33 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 34 34 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 35 35 H 1.09006 * 113.72646 * 252.39819 * 6 4 3 36 36 H 1.08996 * 113.73539 * 23.67234 * 6 4 3 37 37 H 1.09001 * 113.76403 * 90.59570 * 7 6 4 38 38 H 1.08998 * 113.75610 * 221.96365 * 7 6 4 39 39 H 1.09007 * 109.47323 * 190.64146 * 9 8 7 40 40 H 1.09001 * 109.47429 * 310.64535 * 9 8 7 41 41 H 0.97000 * 119.99910 * 0.02562 * 12 10 9 42 42 H 0.97005 * 120.00027 * 179.97438 * 16 15 13 43 43 H 1.09000 * 117.51287 * 0.02562 * 25 23 21 44 44 H 1.09000 * 117.51339 * 145.10440 * 25 23 21 45 45 H 1.08998 * 113.64443 * 309.38147 * 27 26 23 46 46 H 1.08997 * 113.64539 * 80.39098 * 27 26 23 47 47 H 1.09005 * 113.58241 * 270.38930 * 28 27 26 48 48 H 1.08998 * 113.66190 * 139.58294 * 28 27 26 49 49 H 1.08999 * 113.64487 * 279.61235 * 29 26 23 50 50 H 1.09003 * 113.64424 * 50.60978 * 29 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 3.2145 1.1121 1.9420 6 6 2.6540 3.2284 1.5999 7 6 1.7731 3.1154 2.8572 8 7 1.2178 1.8920 2.2375 9 6 1.0688 0.8199 3.2306 10 6 -0.0528 1.1638 4.1765 11 8 -0.6672 2.2003 4.0373 12 7 -0.3732 0.3197 5.1772 13 6 -1.3933 0.6328 6.0381 14 1 -1.9403 1.5557 5.9142 15 6 -1.7232 -0.2372 7.0700 16 7 -1.0572 -1.3599 7.2211 17 14 -3.1134 0.1892 8.2425 18 1 -4.3912 -0.3505 7.7122 19 1 -2.8386 -0.4079 9.5742 20 1 -3.2158 1.6649 8.3733 21 6 2.1389 -1.1672 0.0005 22 8 3.3517 -1.1672 0.0010 23 6 1.3854 -2.4723 0.0005 24 1 0.4480 -2.4741 -0.5555 25 6 1.4589 -3.3315 1.2658 26 6 2.2043 -3.7583 0.0046 27 6 3.7129 -3.9315 -0.2023 28 6 3.4269 -5.4286 -0.4147 29 6 2.0060 -5.0205 -0.8418 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 -0.8900 -0.5138 32 1 -0.3633 0.8900 -0.5139 33 1 3.1499 1.1384 -0.5137 34 1 1.6085 2.0284 -0.5138 35 1 3.6846 3.5145 1.8106 36 1 2.2037 3.8160 0.8000 37 1 2.3353 2.9280 3.7720 38 1 1.0486 3.9233 2.9597 39 1 0.8409 -0.1171 2.7224 40 1 1.9971 0.7126 3.7916 41 1 0.1184 -0.5090 5.2888 42 1 -1.2873 -1.9671 7.9418 43 1 2.0519 -2.9525 2.0981 44 1 0.5700 -3.8989 1.5415 45 1 4.0928 -3.4286 -1.0916 46 1 4.3034 -3.7214 0.6895 47 1 3.4550 -6.0128 0.5052 48 1 4.0122 -5.8762 -1.2179 49 1 1.2281 -5.6833 -0.4627 50 1 1.9107 -4.8206 -1.9091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479250338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:44 Heat of formation + Delta-G solvation = 1.714861 kcal Electronic energy + Delta-G solvation = -30130.858948 eV Core-core repulsion = 26160.312670 eV Total energy + Delta-G solvation = -3970.546278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.72706 -41.03106 -39.69107 -39.17157 -36.37241 -35.94629 -34.62359 -33.34784 -32.09927 -30.11382 -27.51280 -27.48050 -26.56580 -25.64736 -25.31044 -23.97655 -23.40927 -21.12682 -20.72384 -20.02810 -19.92721 -19.09723 -18.27318 -17.74583 -17.27405 -17.06994 -16.85762 -16.49134 -16.09619 -16.02957 -15.72976 -15.62920 -15.39827 -14.96843 -14.88492 -14.11286 -14.04032 -13.70066 -13.61099 -13.54873 -13.36933 -13.20492 -13.01161 -12.91884 -12.79080 -12.53582 -12.45875 -12.44155 -12.38531 -12.25221 -12.14556 -11.92069 -11.69694 -11.50390 -11.26357 -11.00421 -10.74318 -10.56016 -10.40124 -10.03986 -9.86017 -9.46085 -8.48009 -5.97244 1.36425 1.40451 1.49637 1.53132 1.98271 2.00700 2.27074 2.76158 2.81559 3.17412 3.26819 3.33576 3.59136 3.68056 3.71091 3.82217 3.90014 3.93831 3.98831 4.15045 4.18676 4.22606 4.32454 4.36908 4.41551 4.45361 4.51058 4.57271 4.64484 4.73640 4.79164 4.83461 4.84704 4.86361 4.90541 4.95752 5.00413 5.06650 5.10048 5.17606 5.24576 5.37619 5.40414 5.40520 5.52253 5.57067 5.88974 6.05538 6.42942 6.56866 7.10208 7.20018 7.52099 8.07312 8.69406 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009714 B = 0.003569 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.703484 B = 7844.169966 C =10028.937550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.602 5.602 3 C 0.140 3.860 4 C 0.013 3.987 5 H 0.065 0.935 6 C -0.114 4.114 7 C 0.008 3.992 8 N -0.452 5.452 9 C 0.033 3.967 10 C 0.446 3.554 11 O -0.612 6.612 12 N -0.573 5.573 13 C -0.332 4.332 14 H 0.080 0.920 15 C -0.011 4.011 16 N -0.920 5.920 17 Si 0.992 3.008 18 H -0.269 1.269 19 H -0.271 1.271 20 H -0.273 1.273 21 C 0.537 3.463 22 O -0.572 6.572 23 C -0.183 4.183 24 H 0.143 0.857 25 C -0.124 4.124 26 C -0.131 4.131 27 C -0.089 4.089 28 C -0.134 4.134 29 C -0.089 4.089 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.393 0.607 42 H 0.278 0.722 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.076 0.924 46 H 0.048 0.952 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 -4.603 -17.844 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.332 5.332 3 C 0.017 3.983 4 C -0.098 4.098 5 H 0.083 0.917 6 C -0.152 4.152 7 C -0.121 4.121 8 N -0.175 5.175 9 C -0.099 4.099 10 C 0.233 3.767 11 O -0.498 6.498 12 N -0.211 5.211 13 C -0.462 4.462 14 H 0.098 0.902 15 C -0.211 4.211 16 N -0.561 5.561 17 Si 0.816 3.184 18 H -0.194 1.194 19 H -0.196 1.196 20 H -0.198 1.198 21 C 0.327 3.673 22 O -0.452 6.452 23 C -0.203 4.203 24 H 0.161 0.839 25 C -0.161 4.161 26 C -0.131 4.131 27 C -0.127 4.127 28 C -0.171 4.171 29 C -0.126 4.126 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.226 0.774 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.140 0.860 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.100 0.900 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.240 -4.046 -18.118 19.927 hybrid contribution 0.208 -0.241 1.782 1.810 sum 7.449 -4.287 -16.337 18.460 Atomic orbital electron populations 1.21883 0.77914 1.03993 1.01831 1.47753 1.07929 1.05413 1.72154 1.21457 0.97942 0.84796 0.94064 1.23959 0.91431 0.97887 0.96482 0.91741 1.23325 1.00682 0.93797 0.97409 1.23676 0.97054 0.94577 0.96766 1.68379 1.31723 1.02049 1.15342 1.22201 0.95878 0.97831 0.94019 1.20521 0.87535 0.85148 0.83520 1.90484 1.56668 1.27522 1.75094 1.41945 1.31949 1.20733 1.26425 1.19652 1.11642 1.06295 1.08587 0.90235 1.26033 1.00929 0.94934 0.99219 1.69681 1.41937 1.10942 1.33557 0.84937 0.77803 0.78363 0.77299 1.19444 1.19611 1.19778 1.20052 0.87069 0.85184 0.75039 1.90640 1.15071 1.87780 1.51725 1.22269 1.02800 0.89512 1.05770 0.83916 1.22808 1.02626 1.00605 0.90082 1.22479 0.96133 0.94153 1.00370 1.22304 0.92813 0.96478 1.01070 1.22791 0.96873 0.95265 1.02168 1.22516 0.97837 0.92994 0.99289 0.94159 0.89405 0.89815 0.89567 0.88063 0.88998 0.87253 0.92838 0.90702 0.88943 0.92871 0.77373 0.91301 0.90062 0.86049 0.90539 0.93362 0.89857 0.89932 0.90009 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.86 9.95 127.77 1.27 3.13 16 2 N -0.60 -14.40 2.82 -846.75 -2.39 -16.79 16 3 C 0.14 3.15 5.59 86.38 0.48 3.63 16 4 C 0.01 0.33 3.57 45.02 0.16 0.49 16 5 H 0.06 1.86 7.80 -2.39 -0.02 1.84 16 6 C -0.11 -2.48 7.84 31.24 0.24 -2.23 16 7 C 0.01 0.26 6.75 86.40 0.58 0.84 16 8 N -0.45 -14.68 5.32 -888.37 -4.73 -19.41 16 9 C 0.03 1.22 5.02 85.56 0.43 1.65 16 10 C 0.45 21.66 7.59 87.66 0.67 22.32 16 11 O -0.61 -33.81 15.13 -3.07 -0.05 -33.85 16 12 N -0.57 -30.01 5.29 -306.98 -1.62 -31.63 16 13 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 14 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 15 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 16 N -0.92 -49.91 13.05 21.66 0.28 -49.62 16 17 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 18 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 C 0.54 14.38 7.46 87.66 0.65 15.04 16 22 O -0.57 -18.58 14.72 -3.02 -0.04 -18.63 16 23 C -0.18 -4.04 5.28 -11.68 -0.06 -4.10 16 24 H 0.14 2.49 6.44 -2.39 -0.02 2.47 16 25 C -0.12 -2.82 10.24 30.50 0.31 -2.51 16 26 C -0.13 -2.75 2.88 -52.32 -0.15 -2.90 16 27 C -0.09 -1.99 6.47 30.98 0.20 -1.79 16 28 C -0.13 -2.16 8.08 31.19 0.25 -1.91 16 29 C -0.09 -1.38 8.10 30.98 0.25 -1.13 16 30 H 0.04 1.11 6.72 -2.39 -0.02 1.10 16 31 H 0.09 1.45 6.00 -2.39 -0.01 1.44 16 32 H 0.08 1.60 7.89 -2.38 -0.02 1.58 16 33 H 0.09 1.94 7.42 -2.39 -0.02 1.93 16 34 H 0.10 1.89 7.66 -2.39 -0.02 1.87 16 35 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.11 2.00 7.94 -2.39 -0.02 1.99 16 37 H 0.05 1.75 7.78 -2.39 -0.02 1.73 16 38 H 0.07 2.60 8.09 -2.39 -0.02 2.59 16 39 H 0.09 3.32 7.06 -2.38 -0.02 3.30 16 40 H 0.05 1.94 7.69 -2.39 -0.02 1.92 16 41 H 0.39 19.89 7.90 -92.71 -0.73 19.16 16 42 H 0.28 14.08 8.31 -92.70 -0.77 13.31 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.08 1.82 8.05 -2.39 -0.02 1.80 16 46 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 48 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.21 402.26 0.27 -69.95 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: 0.21 Total: 42.81 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 6.58 Total: 12.25 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -8.46 Total: -117.45 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -0.09 Total: -52.48 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -70.21 0.27 -69.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479250338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.660 kcal (2) G-P(sol) polarization free energy of solvation -70.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds