Wall clock time and date at job start Tue Mar 31 2020 18:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00133 * 2 1 4 4 C 1.53000 * 109.47114 * 90.00109 * 3 2 1 5 5 H 1.08996 * 112.74949 * 284.23418 * 4 3 2 6 6 C 1.53515 * 113.52939 * 153.40704 * 4 3 2 7 7 C 1.53515 * 83.57623 * 219.20316 * 6 4 3 8 8 N 1.47480 * 87.93275 * 26.02415 * 7 6 4 9 9 C 1.46898 * 111.00405 * 221.29694 * 8 7 6 10 10 C 1.50696 * 109.47016 * 265.97353 * 9 8 7 11 11 O 1.21296 * 120.00023 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00058 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00172 * 179.97438 * 12 10 9 14 14 H 1.08006 * 119.99680 * 0.02562 * 13 12 10 15 15 C 1.38946 * 119.99963 * 179.97438 * 13 12 10 16 16 N 1.31413 * 119.99720 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00173 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47357 * 89.99577 * 17 15 13 19 19 H 1.48497 * 109.47089 * 209.99772 * 17 15 13 20 20 H 1.48504 * 109.47076 * 329.99621 * 17 15 13 21 21 C 1.34779 * 120.00273 * 180.02562 * 2 1 3 22 22 O 1.21281 * 120.00460 * 179.97438 * 21 2 1 23 23 C 1.50697 * 119.99694 * 359.97438 * 21 2 1 24 24 H 1.08997 * 115.56354 * 34.34864 * 23 21 2 25 25 C 1.53129 * 117.51495 * 248.60696 * 23 21 2 26 26 C 1.52462 * 117.51298 * 180.14503 * 23 21 2 27 27 C 1.53256 * 128.58514 * 349.85237 * 26 23 21 28 28 C 1.53890 * 86.88478 * 194.88799 * 27 26 23 29 29 C 1.53256 * 128.58791 * 225.04938 * 26 23 21 30 30 H 1.08992 * 109.47500 * 90.00014 * 1 2 3 31 31 H 1.09005 * 109.46914 * 210.00224 * 1 2 3 32 32 H 1.08998 * 109.47092 * 329.99705 * 1 2 3 33 33 H 1.09004 * 109.47073 * 330.00409 * 3 2 1 34 34 H 1.09001 * 109.47020 * 210.00426 * 3 2 1 35 35 H 1.08994 * 114.17194 * 332.85176 * 6 4 3 36 36 H 1.09004 * 114.16367 * 105.36523 * 6 4 3 37 37 H 1.09005 * 113.47374 * 271.26127 * 7 6 4 38 38 H 1.08990 * 113.47690 * 140.79679 * 7 6 4 39 39 H 1.09001 * 109.47059 * 25.97281 * 9 8 7 40 40 H 1.09005 * 109.47423 * 145.97169 * 9 8 7 41 41 H 0.96993 * 119.99452 * 359.97438 * 12 10 9 42 42 H 0.97002 * 119.99821 * 180.02562 * 16 15 13 43 43 H 1.09003 * 117.50849 * 359.97438 * 25 23 21 44 44 H 1.08997 * 117.51414 * 145.06398 * 25 23 21 45 45 H 1.09003 * 113.64290 * 309.37983 * 27 26 23 46 46 H 1.08994 * 113.64677 * 80.38696 * 27 26 23 47 47 H 1.09007 * 113.58639 * 270.39201 * 28 27 26 48 48 H 1.08994 * 113.59210 * 139.57030 * 28 27 26 49 49 H 1.09003 * 113.64361 * 279.60835 * 29 26 23 50 50 H 1.09002 * 113.64735 * 50.52053 * 29 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 1 1.5625 2.1174 1.9223 6 6 3.6937 2.5999 1.6008 7 6 3.8968 1.7908 2.8895 8 7 3.1444 0.6924 2.2550 9 6 2.2217 0.0655 3.2108 10 6 2.8900 -1.1263 3.8463 11 8 4.0234 -1.4244 3.5335 12 7 2.2284 -1.8610 4.7624 13 6 2.8363 -2.9455 5.3402 14 1 3.8455 -3.2109 5.0617 15 6 2.1544 -3.7025 6.2850 16 7 2.7369 -4.7423 6.8385 17 14 0.4092 -3.2430 6.7673 18 1 -0.5511 -3.9433 5.8769 19 1 0.1626 -3.6453 8.1753 20 1 0.2288 -1.7751 6.6330 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1672 -0.0010 23 6 1.3854 -2.4723 -0.0005 24 1 0.4470 -2.4736 -0.5549 25 6 1.4612 -3.3329 1.2638 26 6 2.2043 -3.7583 0.0023 27 6 3.7127 -3.9314 -0.2059 28 6 3.4266 -5.4284 -0.4188 29 6 2.0053 -5.0201 -0.8445 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6084 2.0285 -0.5138 34 1 3.1499 1.1384 -0.5139 35 1 4.4607 2.4345 0.8443 36 1 3.4693 3.6542 1.7628 37 1 3.3921 2.2194 3.7554 38 1 4.9399 1.5448 3.0878 39 1 1.9534 0.7864 3.9831 40 1 1.3218 -0.2586 2.6879 41 1 1.3223 -1.6223 5.0128 42 1 2.2607 -5.2711 7.4977 43 1 2.0564 -2.9550 2.0951 44 1 0.5726 -3.9000 1.5408 45 1 4.0919 -3.4281 -1.0953 46 1 4.3039 -3.7217 0.6855 47 1 3.4554 -6.0131 0.5008 48 1 4.0117 -5.8743 -1.2230 49 1 1.2278 -5.6831 -0.4651 50 1 1.9076 -4.8196 -1.9115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479250340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:51 Heat of formation + Delta-G solvation = 38.703248 kcal Electronic energy + Delta-G solvation = -31521.835824 eV Core-core repulsion = 27552.893484 eV Total energy + Delta-G solvation = -3968.942341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.57937 -39.69095 -38.15766 -37.70856 -35.13483 -33.85155 -33.36820 -31.62828 -30.79369 -29.04672 -26.48515 -25.82664 -25.36322 -24.35224 -23.46427 -22.75875 -22.22503 -19.57255 -19.30601 -18.92352 -18.27004 -17.87295 -16.91986 -16.13115 -15.95379 -15.76297 -15.42226 -14.87930 -14.80812 -14.75838 -14.46830 -14.19328 -13.66325 -13.40906 -13.15236 -12.90822 -12.68808 -12.51448 -12.46500 -12.24855 -12.13281 -12.04478 -11.65380 -11.59538 -11.52748 -11.29288 -11.20253 -11.09616 -11.06586 -10.82517 -10.57271 -10.47662 -10.01545 -9.91479 -9.74714 -9.48429 -9.43468 -9.15552 -8.80697 -8.33649 -8.13819 -8.09333 -6.24222 -3.74662 2.95729 3.03851 3.07432 3.10504 3.16227 3.84763 4.02881 4.11856 4.14730 4.51302 4.55571 4.77730 4.89370 4.90006 4.94549 5.03936 5.07799 5.14948 5.17461 5.22221 5.22813 5.33829 5.35127 5.42654 5.52966 5.58218 5.61946 5.65344 5.66795 5.75328 5.79074 5.89071 5.96164 5.98410 6.06526 6.07412 6.10632 6.11537 6.27046 6.49765 6.58164 6.59326 6.68396 6.75057 6.77093 7.27489 7.63164 7.66501 8.22538 8.66643 8.69124 9.04335 9.50554 9.95219 10.89419 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008384 B = 0.005754 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3338.901154 B = 4864.871557 C = 6778.028969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.622 5.622 3 C 0.139 3.861 4 C 0.001 3.999 5 H 0.071 0.929 6 C -0.134 4.134 7 C 0.001 3.999 8 N -0.410 5.410 9 C 0.007 3.993 10 C 0.459 3.541 11 O -0.542 6.542 12 N -0.600 5.600 13 C -0.297 4.297 14 H 0.118 0.882 15 C 0.041 3.959 16 N -0.885 5.885 17 Si 0.875 3.125 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.272 1.272 21 C 0.545 3.455 22 O -0.491 6.491 23 C -0.186 4.186 24 H 0.112 0.888 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.081 4.081 28 C -0.142 4.142 29 C -0.099 4.099 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.081 0.919 41 H 0.366 0.634 42 H 0.271 0.729 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.981 10.962 -15.037 20.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.358 5.358 3 C 0.016 3.984 4 C -0.110 4.110 5 H 0.089 0.911 6 C -0.173 4.173 7 C -0.128 4.128 8 N -0.132 5.132 9 C -0.126 4.126 10 C 0.244 3.756 11 O -0.421 6.421 12 N -0.241 5.241 13 C -0.426 4.426 14 H 0.136 0.864 15 C -0.161 4.161 16 N -0.525 5.525 17 Si 0.702 3.298 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.198 1.198 21 C 0.332 3.668 22 O -0.362 6.362 23 C -0.207 4.207 24 H 0.130 0.870 25 C -0.155 4.155 26 C -0.121 4.121 27 C -0.118 4.118 28 C -0.179 4.179 29 C -0.137 4.137 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.199 0.801 42 H 0.082 0.918 43 H 0.134 0.866 44 H 0.118 0.882 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.180 9.956 -15.413 19.704 hybrid contribution -2.459 0.964 1.240 2.918 sum -9.639 10.919 -14.173 20.323 Atomic orbital electron populations 1.21718 0.80451 1.02906 1.01179 1.47635 1.06124 1.05871 1.76133 1.21339 0.97818 0.84426 0.94827 1.23904 0.96675 0.93628 0.96770 0.91126 1.23133 0.97619 0.97566 0.98952 1.23768 1.01863 0.91637 0.95554 1.68936 1.14497 1.16303 1.13466 1.22548 0.96610 0.97646 0.95757 1.19553 0.87764 0.85420 0.82885 1.90608 1.18175 1.70560 1.62790 1.42242 1.15042 1.28124 1.38663 1.19387 1.01889 1.02219 1.19060 0.86398 1.24981 0.98043 0.96125 0.96979 1.69622 1.37370 1.17217 1.28329 0.86741 0.85322 0.78482 0.79228 1.19710 1.20335 1.19754 1.19515 0.87562 0.83620 0.76075 1.90745 1.13171 1.86408 1.45875 1.22178 1.01661 0.90842 1.06004 0.86970 1.22912 1.02010 0.99587 0.91034 1.22179 0.96568 0.92816 1.00518 1.22280 0.93001 0.93951 1.02607 1.22804 0.96181 0.97493 1.01422 1.22499 0.97864 0.94652 0.98636 0.93133 0.91020 0.91677 0.90939 0.89370 0.88727 0.90975 0.91990 0.89405 0.92973 0.90105 0.80131 0.91808 0.86575 0.88249 0.90072 0.90465 0.89916 0.91699 0.91564 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.01 59.84 0.60 1.32 16 2 N -0.62 -7.88 2.62 -181.57 -0.48 -8.36 16 3 C 0.14 1.62 5.59 -4.04 -0.02 1.60 16 4 C 0.00 0.02 3.34 -71.42 -0.24 -0.22 16 5 H 0.07 0.76 7.91 -51.93 -0.41 0.35 16 6 C -0.13 -1.52 8.00 -26.20 -0.21 -1.73 16 7 C 0.00 0.01 7.71 -7.54 -0.06 -0.05 16 8 N -0.41 -6.97 4.42 -237.92 -1.05 -8.02 16 9 C 0.01 0.12 5.30 -4.98 -0.03 0.10 16 10 C 0.46 10.77 6.84 -10.98 -0.08 10.69 16 11 O -0.54 -15.25 16.01 5.54 0.09 -15.17 16 12 N -0.60 -14.43 5.09 -10.96 -0.06 -14.49 16 13 C -0.30 -8.43 10.16 -14.94 -0.15 -8.58 16 14 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 15 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 16 N -0.88 -26.06 13.96 55.50 0.77 -25.28 16 17 Si 0.88 19.52 27.74 -169.99 -4.71 14.80 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 20 H -0.27 -5.57 6.52 56.52 0.37 -5.20 16 21 C 0.55 8.89 6.94 -10.99 -0.08 8.81 16 22 O -0.49 -10.00 14.15 5.56 0.08 -9.92 16 23 C -0.19 -2.74 4.80 -91.98 -0.44 -3.18 16 24 H 0.11 1.32 7.26 -51.93 -0.38 0.95 16 25 C -0.12 -2.01 10.24 -26.94 -0.28 -2.29 16 26 C -0.12 -1.91 2.88 -154.80 -0.45 -2.36 16 27 C -0.08 -1.39 6.47 -26.14 -0.17 -1.56 16 28 C -0.14 -2.01 8.08 -25.81 -0.21 -2.22 16 29 C -0.10 -1.29 8.10 -26.14 -0.21 -1.50 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.65 6.64 -51.93 -0.34 0.31 16 32 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 33 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 34 H 0.09 1.21 7.16 -51.93 -0.37 0.83 16 35 H 0.09 1.11 7.94 -51.93 -0.41 0.69 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.84 7.42 -51.93 -0.39 0.45 16 38 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.05 0.83 7.30 -51.93 -0.38 0.45 16 40 H 0.08 1.32 7.89 -51.93 -0.41 0.92 16 41 H 0.37 7.85 5.76 -40.82 -0.24 7.61 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.12 2.51 7.09 -51.93 -0.37 2.14 16 44 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 46 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 47 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 400.19 15.07 6.03 6.03 Total: -1.00 -35.33 400.19 -9.74 -45.08 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -8.31 Total: 15.45 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.11 Total: -0.13 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.81 Total: -56.14 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: 0.17 Total: -25.09 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.71 Total: 14.80 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.33 -9.74 -45.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479250340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.779 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds