Wall clock time and date at job start Tue Mar 31 2020 18:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00133 * 2 1 4 4 C 1.53000 * 109.47114 * 90.00109 * 3 2 1 5 5 H 1.08996 * 112.74949 * 284.23418 * 4 3 2 6 6 C 1.53515 * 113.52939 * 153.40704 * 4 3 2 7 7 C 1.53515 * 83.57623 * 219.20316 * 6 4 3 8 8 N 1.47480 * 87.93275 * 26.02415 * 7 6 4 9 9 C 1.46898 * 111.00405 * 221.29694 * 8 7 6 10 10 C 1.50696 * 109.47016 * 265.97353 * 9 8 7 11 11 O 1.21296 * 120.00023 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00058 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00172 * 179.97438 * 12 10 9 14 14 H 1.08006 * 119.99680 * 0.02562 * 13 12 10 15 15 C 1.38946 * 119.99963 * 179.97438 * 13 12 10 16 16 N 1.31413 * 119.99720 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00173 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47357 * 89.99577 * 17 15 13 19 19 H 1.48497 * 109.47089 * 209.99772 * 17 15 13 20 20 H 1.48504 * 109.47076 * 329.99621 * 17 15 13 21 21 C 1.34779 * 120.00273 * 180.02562 * 2 1 3 22 22 O 1.21281 * 120.00460 * 179.97438 * 21 2 1 23 23 C 1.50697 * 119.99694 * 359.97438 * 21 2 1 24 24 H 1.08997 * 115.56354 * 34.34864 * 23 21 2 25 25 C 1.53129 * 117.51495 * 248.60696 * 23 21 2 26 26 C 1.52462 * 117.51298 * 180.14503 * 23 21 2 27 27 C 1.53256 * 128.58514 * 349.85237 * 26 23 21 28 28 C 1.53890 * 86.88478 * 194.88799 * 27 26 23 29 29 C 1.53256 * 128.58791 * 225.04938 * 26 23 21 30 30 H 1.08992 * 109.47500 * 90.00014 * 1 2 3 31 31 H 1.09005 * 109.46914 * 210.00224 * 1 2 3 32 32 H 1.08998 * 109.47092 * 329.99705 * 1 2 3 33 33 H 1.09004 * 109.47073 * 330.00409 * 3 2 1 34 34 H 1.09001 * 109.47020 * 210.00426 * 3 2 1 35 35 H 1.08994 * 114.17194 * 332.85176 * 6 4 3 36 36 H 1.09004 * 114.16367 * 105.36523 * 6 4 3 37 37 H 1.09005 * 113.47374 * 271.26127 * 7 6 4 38 38 H 1.08990 * 113.47690 * 140.79679 * 7 6 4 39 39 H 1.09001 * 109.47059 * 25.97281 * 9 8 7 40 40 H 1.09005 * 109.47423 * 145.97169 * 9 8 7 41 41 H 0.96993 * 119.99452 * 359.97438 * 12 10 9 42 42 H 0.97002 * 119.99821 * 180.02562 * 16 15 13 43 43 H 1.09003 * 117.50849 * 359.97438 * 25 23 21 44 44 H 1.08997 * 117.51414 * 145.06398 * 25 23 21 45 45 H 1.09003 * 113.64290 * 309.37983 * 27 26 23 46 46 H 1.08994 * 113.64677 * 80.38696 * 27 26 23 47 47 H 1.09007 * 113.58639 * 270.39201 * 28 27 26 48 48 H 1.08994 * 113.59210 * 139.57030 * 28 27 26 49 49 H 1.09003 * 113.64361 * 279.60835 * 29 26 23 50 50 H 1.09002 * 113.64735 * 50.52053 * 29 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 1 1.5625 2.1174 1.9223 6 6 3.6937 2.5999 1.6008 7 6 3.8968 1.7908 2.8895 8 7 3.1444 0.6924 2.2550 9 6 2.2217 0.0655 3.2108 10 6 2.8900 -1.1263 3.8463 11 8 4.0234 -1.4244 3.5335 12 7 2.2284 -1.8610 4.7624 13 6 2.8363 -2.9455 5.3402 14 1 3.8455 -3.2109 5.0617 15 6 2.1544 -3.7025 6.2850 16 7 2.7369 -4.7423 6.8385 17 14 0.4092 -3.2430 6.7673 18 1 -0.5511 -3.9433 5.8769 19 1 0.1626 -3.6453 8.1753 20 1 0.2288 -1.7751 6.6330 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1672 -0.0010 23 6 1.3854 -2.4723 -0.0005 24 1 0.4470 -2.4736 -0.5549 25 6 1.4612 -3.3329 1.2638 26 6 2.2043 -3.7583 0.0023 27 6 3.7127 -3.9314 -0.2059 28 6 3.4266 -5.4284 -0.4188 29 6 2.0053 -5.0201 -0.8445 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6084 2.0285 -0.5138 34 1 3.1499 1.1384 -0.5139 35 1 4.4607 2.4345 0.8443 36 1 3.4693 3.6542 1.7628 37 1 3.3921 2.2194 3.7554 38 1 4.9399 1.5448 3.0878 39 1 1.9534 0.7864 3.9831 40 1 1.3218 -0.2586 2.6879 41 1 1.3223 -1.6223 5.0128 42 1 2.2607 -5.2711 7.4977 43 1 2.0564 -2.9550 2.0951 44 1 0.5726 -3.9000 1.5408 45 1 4.0919 -3.4281 -1.0953 46 1 4.3039 -3.7217 0.6855 47 1 3.4554 -6.0131 0.5008 48 1 4.0117 -5.8743 -1.2230 49 1 1.2278 -5.6831 -0.4651 50 1 1.9076 -4.8196 -1.9115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479250340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:50 Heat of formation + Delta-G solvation = 12.364172 kcal Electronic energy + Delta-G solvation = -31522.977973 eV Core-core repulsion = 27552.893484 eV Total energy + Delta-G solvation = -3970.084489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.75158 -40.93425 -39.82146 -39.11493 -36.25406 -35.94518 -34.61063 -33.74907 -32.15125 -30.04858 -27.61782 -27.33592 -26.59843 -25.48468 -25.16058 -24.01169 -23.30732 -21.28437 -20.61631 -20.29817 -20.03437 -19.08392 -18.04893 -17.70490 -17.15663 -17.03241 -16.82536 -16.55086 -16.16699 -16.05694 -15.76698 -15.41218 -15.19656 -14.92581 -14.59251 -14.37105 -14.07246 -13.94685 -13.78342 -13.51332 -13.21754 -13.15199 -13.03235 -12.90912 -12.71743 -12.60837 -12.45269 -12.42788 -12.29902 -12.25968 -12.03110 -11.93681 -11.54622 -11.48375 -11.27312 -10.99967 -10.66600 -10.44231 -10.41582 -10.22494 -9.70544 -9.28397 -8.39878 -5.99993 1.26011 1.32698 1.41217 1.72218 1.99136 2.11212 2.21889 2.69868 2.87830 3.14730 3.28273 3.40929 3.56243 3.67572 3.79668 3.83864 3.88846 3.94077 4.02239 4.09806 4.21268 4.26983 4.29803 4.37498 4.42142 4.46213 4.48995 4.56424 4.67632 4.77916 4.79415 4.81244 4.82311 4.83954 4.97471 5.01069 5.01927 5.02564 5.08004 5.18271 5.25848 5.38145 5.46419 5.47963 5.54956 5.82974 5.93839 6.16872 6.58961 6.62172 6.91416 7.41343 7.51557 8.02444 8.78584 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008384 B = 0.005754 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3338.901154 B = 4864.871557 C = 6778.028969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.615 5.615 3 C 0.136 3.864 4 C 0.010 3.990 5 H 0.104 0.896 6 C -0.112 4.112 7 C -0.011 4.011 8 N -0.457 5.457 9 C 0.024 3.976 10 C 0.458 3.542 11 O -0.602 6.602 12 N -0.594 5.594 13 C -0.318 4.318 14 H 0.045 0.955 15 C -0.015 4.015 16 N -0.937 5.937 17 Si 0.962 3.038 18 H -0.252 1.252 19 H -0.275 1.275 20 H -0.235 1.235 21 C 0.533 3.467 22 O -0.548 6.548 23 C -0.160 4.160 24 H 0.156 0.844 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.091 4.091 28 C -0.138 4.138 29 C -0.074 4.074 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.386 0.614 42 H 0.278 0.722 43 H 0.059 0.941 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.016 0.984 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.802 13.697 -16.766 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.349 5.349 3 C 0.013 3.987 4 C -0.100 4.100 5 H 0.122 0.878 6 C -0.150 4.150 7 C -0.140 4.140 8 N -0.180 5.180 9 C -0.108 4.108 10 C 0.245 3.755 11 O -0.484 6.484 12 N -0.237 5.237 13 C -0.447 4.447 14 H 0.063 0.937 15 C -0.213 4.213 16 N -0.579 5.579 17 Si 0.782 3.218 18 H -0.176 1.176 19 H -0.200 1.200 20 H -0.158 1.158 21 C 0.321 3.679 22 O -0.424 6.424 23 C -0.180 4.180 24 H 0.173 0.827 25 C -0.171 4.171 26 C -0.139 4.139 27 C -0.129 4.129 28 C -0.175 4.175 29 C -0.111 4.111 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.138 0.862 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.221 0.779 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.140 0.860 45 H 0.098 0.902 46 H 0.035 0.965 47 H 0.084 0.916 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.053 12.743 -17.159 25.044 hybrid contribution -0.435 0.124 1.767 1.824 sum -13.488 12.867 -15.392 24.174 Atomic orbital electron populations 1.22048 0.77448 1.04287 1.03241 1.47707 1.07963 1.04976 1.74246 1.21490 0.97487 0.85013 0.94678 1.24032 0.97793 0.91863 0.96321 0.87807 1.23021 0.96772 0.99214 0.96034 1.23873 0.99838 0.92161 0.98105 1.68920 1.16065 1.18643 1.14333 1.22401 0.96467 0.95287 0.96644 1.20785 0.87068 0.86187 0.81445 1.90584 1.21284 1.72324 1.64256 1.42010 1.15692 1.27147 1.38853 1.18860 0.99893 1.04989 1.20985 0.93654 1.26065 1.04252 0.95160 0.95781 1.69822 1.40312 1.18711 1.29010 0.85407 0.77053 0.80472 0.78844 1.17588 1.20008 1.15848 1.19903 0.87117 0.85241 0.75667 1.90738 1.15702 1.87328 1.48607 1.22280 1.02419 0.89509 1.03815 0.82672 1.22690 1.02397 1.01759 0.90291 1.22356 0.95339 0.95477 1.00679 1.22228 0.93955 0.96884 0.99803 1.22783 0.98205 0.94906 1.01600 1.22439 0.96707 0.92435 0.99517 0.90686 0.91078 0.88960 0.86236 0.92392 0.90021 0.86954 0.90102 0.93269 0.89991 0.88123 0.77939 0.91279 0.92196 0.86027 0.90174 0.96540 0.91584 0.89310 0.89765 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 10.01 127.77 1.28 2.17 16 2 N -0.62 -13.81 2.62 -846.76 -2.22 -16.03 16 3 C 0.14 2.76 5.59 86.38 0.48 3.24 16 4 C 0.01 0.21 3.34 42.19 0.14 0.35 16 5 H 0.10 1.60 7.91 -2.39 -0.02 1.58 16 6 C -0.11 -2.29 8.00 30.94 0.25 -2.04 16 7 C -0.01 -0.32 7.71 83.58 0.64 0.33 16 8 N -0.46 -15.49 4.42 -906.64 -4.01 -19.50 16 9 C 0.02 0.83 5.30 85.56 0.45 1.29 16 10 C 0.46 22.64 6.84 87.65 0.60 23.24 16 11 O -0.60 -37.38 16.01 -3.08 -0.05 -37.43 16 12 N -0.59 -29.62 5.09 -306.98 -1.56 -31.18 16 13 C -0.32 -19.44 10.16 84.04 0.85 -18.58 16 14 H 0.05 3.36 7.39 -2.91 -0.02 3.34 16 15 C -0.01 -0.83 5.50 84.93 0.47 -0.37 16 16 N -0.94 -58.14 13.96 21.66 0.30 -57.84 16 17 Si 0.96 39.62 27.74 68.60 1.90 41.52 16 18 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.23 -8.22 6.52 99.48 0.65 -7.57 16 21 C 0.53 17.24 6.94 87.66 0.61 17.85 16 22 O -0.55 -23.79 14.15 -3.03 -0.04 -23.83 16 23 C -0.16 -4.50 4.80 -11.68 -0.06 -4.56 16 24 H 0.16 2.99 7.26 -2.39 -0.02 2.97 16 25 C -0.13 -4.68 10.24 30.46 0.31 -4.37 16 26 C -0.14 -4.47 2.88 -52.37 -0.15 -4.62 16 27 C -0.09 -3.44 6.47 30.98 0.20 -3.24 16 28 C -0.14 -4.04 8.08 31.19 0.25 -3.79 16 29 C -0.07 -1.79 8.10 30.98 0.25 -1.54 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.93 6.64 -2.38 -0.02 0.92 16 32 H 0.09 0.71 8.07 -2.39 -0.02 0.69 16 33 H 0.12 1.34 8.07 -2.39 -0.02 1.32 16 34 H 0.06 1.55 7.16 -2.39 -0.02 1.54 16 35 H 0.08 1.88 7.94 -2.39 -0.02 1.86 16 36 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.08 2.03 7.42 -2.38 -0.02 2.01 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.08 2.35 7.30 -2.39 -0.02 2.33 16 40 H 0.10 3.05 7.89 -2.38 -0.02 3.03 16 41 H 0.39 16.00 5.76 -92.71 -0.53 15.47 16 42 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 43 H 0.06 2.81 7.09 -2.39 -0.02 2.79 16 44 H 0.12 3.57 8.14 -2.39 -0.02 3.56 16 45 H 0.08 2.95 8.05 -2.39 -0.02 2.93 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 48 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -93.26 400.19 1.25 -92.01 By element: Atomic # 1 Polarization: 46.56 SS G_CDS: 0.34 Total: 46.90 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.58 Total: 5.38 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -7.49 Total: -124.54 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -0.09 Total: -61.27 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.90 Total: 41.52 kcal Total: -93.26 1.25 -92.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479250340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.370 kcal (2) G-P(sol) polarization free energy of solvation -93.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds