Wall clock time and date at job start Tue Mar 31 2020 18:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99872 * 2 1 4 4 C 1.50709 * 109.47119 * 66.04742 * 3 2 1 5 5 O 1.21297 * 119.99280 * 359.97438 * 4 3 2 6 6 N 1.34770 * 119.99962 * 180.02562 * 4 3 2 7 7 C 1.37110 * 119.99755 * 179.97438 * 6 4 3 8 8 H 1.07994 * 120.00072 * 359.97438 * 7 6 4 9 9 C 1.38950 * 119.99755 * 179.97438 * 7 6 4 10 10 N 1.31413 * 120.00242 * 359.72742 * 9 7 6 11 11 Si 1.86796 * 119.99600 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46970 * 179.72599 * 11 9 7 13 13 H 1.48497 * 109.47628 * 299.72513 * 11 9 7 14 14 H 1.48499 * 109.47319 * 59.73095 * 11 9 7 15 15 C 1.46902 * 111.00168 * 236.05064 * 2 1 3 16 16 C 1.52999 * 109.46944 * 199.41849 * 15 2 1 17 17 H 1.09003 * 110.88830 * 308.16557 * 16 15 2 18 18 C 1.55164 * 111.00586 * 72.08764 * 16 15 2 19 19 C 1.54324 * 102.94248 * 153.57440 * 18 16 15 20 20 N 1.47020 * 107.26969 * 337.80720 * 19 18 16 21 21 C 1.34780 * 125.64799 * 178.97425 * 20 19 18 22 22 O 1.21616 * 120.00283 * 174.83993 * 21 20 19 23 23 C 1.47104 * 119.99575 * 354.84749 * 21 20 19 24 24 C 1.32617 * 124.61505 * 185.84215 * 23 21 20 25 25 C 1.51113 * 110.75825 * 179.97438 * 24 23 21 26 26 C 1.54581 * 104.83844 * 16.59670 * 25 24 23 27 27 C 1.51107 * 124.62366 * 5.53947 * 23 21 20 28 28 C 1.47428 * 108.70717 * 358.94176 * 20 19 18 29 29 H 1.09005 * 109.47212 * 54.82607 * 1 2 3 30 30 H 1.08996 * 109.47150 * 174.82379 * 1 2 3 31 31 H 1.08996 * 109.46992 * 294.82411 * 1 2 3 32 32 H 1.08993 * 109.47564 * 306.04934 * 3 2 1 33 33 H 1.08995 * 109.47379 * 186.04378 * 3 2 1 34 34 H 0.97000 * 120.00622 * 359.97438 * 6 4 3 35 35 H 0.96997 * 119.99625 * 0.27564 * 10 9 7 36 36 H 1.09004 * 109.46782 * 319.41686 * 15 2 1 37 37 H 1.08998 * 109.47049 * 79.41833 * 15 2 1 38 38 H 1.08993 * 110.71757 * 271.93923 * 18 16 15 39 39 H 1.09003 * 110.71335 * 35.21140 * 18 16 15 40 40 H 1.08997 * 109.87960 * 218.39049 * 19 18 16 41 41 H 1.09001 * 110.00828 * 97.29481 * 19 18 16 42 42 H 1.08002 * 124.62384 * 0.02562 * 24 23 21 43 43 H 1.09000 * 110.36904 * 135.43804 * 25 24 23 44 44 H 1.08999 * 110.36696 * 257.75761 * 25 24 23 45 45 H 1.08992 * 110.98389 * 93.07685 * 26 25 24 46 46 H 1.09000 * 110.98030 * 216.87478 * 26 25 24 47 47 H 1.09004 * 110.36321 * 282.24172 * 27 23 21 48 48 H 1.08994 * 110.36679 * 44.56268 * 27 23 21 49 49 H 1.09002 * 110.36456 * 265.28693 * 28 20 19 50 50 H 1.09002 * 110.46030 * 143.01466 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 8 1.0046 1.4455 2.1408 6 7 2.0179 3.3202 1.5234 7 6 1.6913 3.9351 2.7045 8 1 1.1283 3.3994 3.4545 9 6 2.0846 5.2474 2.9366 10 7 2.7742 5.8974 2.0262 11 14 1.6389 6.0853 4.5455 12 1 2.1769 7.4694 4.5483 13 1 0.1615 6.1283 4.6887 14 1 2.2241 5.3245 5.6785 15 6 1.9955 -0.7659 -1.1376 16 6 3.4483 -1.1573 -0.8603 17 1 4.0379 -0.2860 -0.5752 18 6 3.5289 -2.2635 0.2248 19 6 4.8544 -2.9797 -0.1095 20 7 5.1560 -2.7029 -1.5216 21 6 6.2423 -3.1352 -2.1922 22 8 6.3441 -2.9242 -3.3855 23 6 7.3046 -3.8624 -1.4805 24 6 8.4579 -4.2310 -2.0216 25 6 9.3157 -4.9570 -1.0114 26 6 8.3425 -5.3534 0.1223 27 6 7.2333 -4.2855 -0.0316 28 6 4.0731 -1.8747 -2.0828 29 1 -0.3634 0.5920 -0.8400 30 1 -0.3633 -1.0234 -0.0927 31 1 -0.3633 0.4314 0.9327 32 1 1.5611 1.9274 -0.8308 33 1 3.0796 1.3445 -0.1082 34 1 2.5232 3.8015 0.8496 35 1 3.0052 5.4624 1.1906 36 1 1.3970 -1.6661 -1.2777 37 1 1.9495 -0.1551 -2.0393 38 1 3.5687 -1.8240 1.2213 39 1 2.6869 -2.9504 0.1383 40 1 4.7441 -4.0534 0.0424 41 1 5.6552 -2.5962 0.5227 42 1 8.7453 -4.0379 -3.0446 43 1 9.7588 -5.8465 -1.4593 44 1 10.0938 -4.2960 -0.6295 45 1 7.9478 -6.3570 -0.0353 46 1 8.8250 -5.2739 1.0965 47 1 7.4291 -3.4353 0.6219 48 1 6.2578 -4.7183 0.1896 49 1 3.3305 -2.5034 -2.5742 50 1 4.4763 -1.1454 -2.7854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481483162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:43 Heat of formation + Delta-G solvation = -40.854187 kcal Electronic energy + Delta-G solvation = -28911.465978 eV Core-core repulsion = 24939.073768 eV Total energy + Delta-G solvation = -3972.392210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.61196 -39.01069 -38.32186 -37.54358 -36.21302 -34.21533 -32.32418 -31.11555 -29.94359 -29.69878 -28.66019 -28.00019 -26.43174 -24.49795 -23.87533 -22.27144 -21.32458 -20.91080 -20.40920 -19.45117 -18.61364 -17.88271 -17.09723 -16.83015 -16.35868 -16.00564 -15.68467 -15.42714 -14.97908 -14.59199 -14.20992 -14.00809 -13.93098 -13.73377 -13.65244 -13.50016 -13.08862 -12.94611 -12.71538 -12.55571 -12.31603 -12.25579 -12.02654 -11.80460 -11.71431 -11.62356 -11.44008 -11.36759 -11.19908 -10.99071 -10.90185 -10.83338 -10.56177 -10.21265 -10.11529 -9.85875 -9.51537 -9.36502 -8.75507 -8.51442 -8.05221 -7.91904 -6.75341 -3.88602 1.09467 2.76187 3.03589 3.30465 3.34262 3.54516 3.83182 3.86885 4.04896 4.17152 4.28380 4.42875 4.48295 4.59918 4.65822 4.73423 4.87735 4.96333 5.00758 5.08450 5.20443 5.22070 5.26654 5.32242 5.36833 5.39896 5.41651 5.51313 5.53349 5.56198 5.59789 5.67600 5.69559 5.76452 5.78149 5.83216 5.87161 5.92482 6.03619 6.06723 6.15410 6.19932 6.22924 6.48980 7.16089 7.29508 7.31579 7.80782 7.95695 8.07961 8.60421 8.80580 9.47782 9.88807 10.68067 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.002219 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.115622 B =12615.263918 C =13519.433302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.515 5.515 3 C 0.043 3.957 4 C 0.447 3.553 5 O -0.571 6.571 6 N -0.577 5.577 7 C -0.381 4.381 8 H 0.099 0.901 9 C -0.010 4.010 10 N -0.901 5.901 11 Si 1.091 2.909 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.065 3.935 16 C -0.096 4.096 17 H 0.087 0.913 18 C -0.116 4.116 19 C 0.093 3.907 20 N -0.612 5.612 21 C 0.580 3.420 22 O -0.546 6.546 23 C -0.189 4.189 24 C -0.076 4.076 25 C -0.107 4.107 26 C -0.125 4.125 27 C -0.098 4.098 28 C 0.112 3.888 29 H 0.015 0.985 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.375 0.625 35 H 0.261 0.739 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.137 0.863 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.563 -20.968 -7.118 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.239 5.239 3 C -0.088 4.088 4 C 0.233 3.767 5 O -0.455 6.455 6 N -0.215 5.215 7 C -0.510 4.510 8 H 0.117 0.883 9 C -0.213 4.213 10 N -0.541 5.541 11 Si 0.917 3.083 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.064 4.064 16 C -0.116 4.116 17 H 0.106 0.894 18 C -0.154 4.154 19 C -0.029 4.029 20 N -0.345 5.345 21 C 0.371 3.629 22 O -0.425 6.425 23 C -0.192 4.192 24 C -0.096 4.096 25 C -0.144 4.144 26 C -0.162 4.162 27 C -0.134 4.134 28 C -0.011 4.011 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.208 0.792 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.155 0.845 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.100 0.900 49 H 0.087 0.913 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.529 -20.083 -5.890 22.600 hybrid contribution -0.075 -0.693 -2.140 2.250 sum 8.453 -20.776 -8.030 23.824 Atomic orbital electron populations 1.22543 0.86422 1.00791 1.02645 1.61529 1.08601 1.12563 1.41195 1.21943 1.00695 0.89208 0.96956 1.19656 0.85434 0.82620 0.88991 1.90481 1.43502 1.64387 1.47090 1.41955 1.50166 1.11467 1.17957 1.20514 1.36584 0.98599 0.95328 0.88338 1.26501 0.95592 0.93644 1.05521 1.70902 1.36445 1.39181 1.07546 0.83137 0.76374 0.75998 0.72801 1.20437 1.21042 1.21000 1.22050 0.94200 0.98163 0.91965 1.22369 0.96443 0.98401 0.94346 0.89439 1.22622 0.95507 0.96806 1.00446 1.22526 0.98489 1.00147 0.81772 1.48317 1.21660 1.52193 1.12337 1.17665 0.80633 0.78612 0.85985 1.90793 1.78948 1.58177 1.14567 1.21760 0.96130 1.04156 0.97142 1.24042 0.93312 0.93018 0.99231 1.21486 0.98097 1.00063 0.94759 1.22493 0.96045 0.98929 0.98779 1.21658 1.00276 0.98808 0.92701 1.22235 0.88857 0.93745 0.96270 0.96654 0.92255 0.88529 0.93560 0.89552 0.79226 0.92774 0.90480 0.94499 0.88944 0.90492 0.91025 0.90854 0.84528 0.90227 0.89590 0.90820 0.90426 0.89982 0.90022 0.91294 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.19 60.06 0.55 0.92 16 2 N -0.52 -7.95 4.37 -244.37 -1.07 -9.02 16 3 C 0.04 0.75 5.28 -4.97 -0.03 0.72 16 4 C 0.45 10.31 7.54 -10.98 -0.08 10.23 16 5 O -0.57 -15.03 13.88 5.54 0.08 -14.95 16 6 N -0.58 -14.36 5.28 -10.96 -0.06 -14.42 16 7 C -0.38 -10.60 9.68 -14.93 -0.14 -10.74 16 8 H 0.10 2.89 7.16 -52.49 -0.38 2.52 16 9 C -0.01 -0.28 5.50 -17.47 -0.10 -0.37 16 10 N -0.90 -25.22 13.68 55.50 0.76 -24.46 16 11 Si 1.09 24.14 29.92 -169.99 -5.09 19.05 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 C 0.06 0.76 4.45 -3.82 -0.02 0.74 16 16 C -0.10 -1.05 3.09 -88.47 -0.27 -1.33 16 17 H 0.09 1.08 6.68 -51.93 -0.35 0.73 16 18 C -0.12 -1.16 6.36 -24.89 -0.16 -1.32 16 19 C 0.09 0.84 5.23 -3.07 -0.02 0.82 16 20 N -0.61 -6.95 3.33 -171.91 -0.57 -7.52 16 21 C 0.58 7.54 7.81 -12.66 -0.10 7.44 16 22 O -0.55 -8.96 17.08 5.26 0.09 -8.87 16 23 C -0.19 -1.90 6.05 -102.73 -0.62 -2.52 16 24 C -0.08 -0.67 10.43 -36.01 -0.38 -1.05 16 25 C -0.11 -0.64 6.80 -26.85 -0.18 -0.83 16 26 C -0.12 -0.72 7.17 -24.98 -0.18 -0.90 16 27 C -0.10 -0.72 4.72 -26.77 -0.13 -0.84 16 28 C 0.11 1.23 6.36 -2.53 -0.02 1.21 16 29 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 30 H 0.06 0.76 7.85 -51.93 -0.41 0.36 16 31 H 0.10 1.84 5.99 -51.93 -0.31 1.53 16 32 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.09 1.35 6.57 -51.93 -0.34 1.01 16 34 H 0.37 8.68 6.73 -40.82 -0.27 8.40 16 35 H 0.26 7.02 6.77 -40.82 -0.28 6.75 16 36 H 0.08 0.80 7.60 -51.93 -0.39 0.40 16 37 H 0.04 0.41 8.00 -51.93 -0.42 0.00 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.73 7.93 -51.93 -0.41 0.31 16 40 H 0.07 0.54 6.32 -51.93 -0.33 0.21 16 41 H 0.07 0.63 6.46 -51.93 -0.34 0.29 16 42 H 0.14 1.22 8.04 -52.49 -0.42 0.80 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.58 7.27 -51.93 -0.38 0.21 16 48 H 0.08 0.55 5.51 -51.93 -0.29 0.26 16 49 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 50 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 LS Contribution 392.37 15.07 5.91 5.91 Total: -1.00 -34.21 392.37 -9.70 -43.91 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.89 Total: 8.19 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.86 Total: 2.18 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.94 Total: -55.42 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.17 Total: -23.82 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.09 Total: 19.05 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.21 -9.70 -43.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481483162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.053 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds