Wall clock time and date at job start Tue Mar 31 2020 18:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99872 * 2 1 4 4 C 1.50709 * 109.47119 * 66.04742 * 3 2 1 5 5 O 1.21297 * 119.99280 * 359.97438 * 4 3 2 6 6 N 1.34770 * 119.99962 * 180.02562 * 4 3 2 7 7 C 1.37110 * 119.99755 * 179.97438 * 6 4 3 8 8 H 1.07994 * 120.00072 * 359.97438 * 7 6 4 9 9 C 1.38950 * 119.99755 * 179.97438 * 7 6 4 10 10 N 1.31413 * 120.00242 * 359.72742 * 9 7 6 11 11 Si 1.86796 * 119.99600 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46970 * 179.72599 * 11 9 7 13 13 H 1.48497 * 109.47628 * 299.72513 * 11 9 7 14 14 H 1.48499 * 109.47319 * 59.73095 * 11 9 7 15 15 C 1.46902 * 111.00168 * 236.05064 * 2 1 3 16 16 C 1.52999 * 109.46944 * 199.41849 * 15 2 1 17 17 H 1.09003 * 110.88830 * 308.16557 * 16 15 2 18 18 C 1.55164 * 111.00586 * 72.08764 * 16 15 2 19 19 C 1.54324 * 102.94248 * 153.57440 * 18 16 15 20 20 N 1.47020 * 107.26969 * 337.80720 * 19 18 16 21 21 C 1.34780 * 125.64799 * 178.97425 * 20 19 18 22 22 O 1.21616 * 120.00283 * 174.83993 * 21 20 19 23 23 C 1.47104 * 119.99575 * 354.84749 * 21 20 19 24 24 C 1.32617 * 124.61505 * 185.84215 * 23 21 20 25 25 C 1.51113 * 110.75825 * 179.97438 * 24 23 21 26 26 C 1.54581 * 104.83844 * 16.59670 * 25 24 23 27 27 C 1.51107 * 124.62366 * 5.53947 * 23 21 20 28 28 C 1.47428 * 108.70717 * 358.94176 * 20 19 18 29 29 H 1.09005 * 109.47212 * 54.82607 * 1 2 3 30 30 H 1.08996 * 109.47150 * 174.82379 * 1 2 3 31 31 H 1.08996 * 109.46992 * 294.82411 * 1 2 3 32 32 H 1.08993 * 109.47564 * 306.04934 * 3 2 1 33 33 H 1.08995 * 109.47379 * 186.04378 * 3 2 1 34 34 H 0.97000 * 120.00622 * 359.97438 * 6 4 3 35 35 H 0.96997 * 119.99625 * 0.27564 * 10 9 7 36 36 H 1.09004 * 109.46782 * 319.41686 * 15 2 1 37 37 H 1.08998 * 109.47049 * 79.41833 * 15 2 1 38 38 H 1.08993 * 110.71757 * 271.93923 * 18 16 15 39 39 H 1.09003 * 110.71335 * 35.21140 * 18 16 15 40 40 H 1.08997 * 109.87960 * 218.39049 * 19 18 16 41 41 H 1.09001 * 110.00828 * 97.29481 * 19 18 16 42 42 H 1.08002 * 124.62384 * 0.02562 * 24 23 21 43 43 H 1.09000 * 110.36904 * 135.43804 * 25 24 23 44 44 H 1.08999 * 110.36696 * 257.75761 * 25 24 23 45 45 H 1.08992 * 110.98389 * 93.07685 * 26 25 24 46 46 H 1.09000 * 110.98030 * 216.87478 * 26 25 24 47 47 H 1.09004 * 110.36321 * 282.24172 * 27 23 21 48 48 H 1.08994 * 110.36679 * 44.56268 * 27 23 21 49 49 H 1.09002 * 110.36456 * 265.28693 * 28 20 19 50 50 H 1.09002 * 110.46030 * 143.01466 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 8 1.0046 1.4455 2.1408 6 7 2.0179 3.3202 1.5234 7 6 1.6913 3.9351 2.7045 8 1 1.1283 3.3994 3.4545 9 6 2.0846 5.2474 2.9366 10 7 2.7742 5.8974 2.0262 11 14 1.6389 6.0853 4.5455 12 1 2.1769 7.4694 4.5483 13 1 0.1615 6.1283 4.6887 14 1 2.2241 5.3245 5.6785 15 6 1.9955 -0.7659 -1.1376 16 6 3.4483 -1.1573 -0.8603 17 1 4.0379 -0.2860 -0.5752 18 6 3.5289 -2.2635 0.2248 19 6 4.8544 -2.9797 -0.1095 20 7 5.1560 -2.7029 -1.5216 21 6 6.2423 -3.1352 -2.1922 22 8 6.3441 -2.9242 -3.3855 23 6 7.3046 -3.8624 -1.4805 24 6 8.4579 -4.2310 -2.0216 25 6 9.3157 -4.9570 -1.0114 26 6 8.3425 -5.3534 0.1223 27 6 7.2333 -4.2855 -0.0316 28 6 4.0731 -1.8747 -2.0828 29 1 -0.3634 0.5920 -0.8400 30 1 -0.3633 -1.0234 -0.0927 31 1 -0.3633 0.4314 0.9327 32 1 1.5611 1.9274 -0.8308 33 1 3.0796 1.3445 -0.1082 34 1 2.5232 3.8015 0.8496 35 1 3.0052 5.4624 1.1906 36 1 1.3970 -1.6661 -1.2777 37 1 1.9495 -0.1551 -2.0393 38 1 3.5687 -1.8240 1.2213 39 1 2.6869 -2.9504 0.1383 40 1 4.7441 -4.0534 0.0424 41 1 5.6552 -2.5962 0.5227 42 1 8.7453 -4.0379 -3.0446 43 1 9.7588 -5.8465 -1.4593 44 1 10.0938 -4.2960 -0.6295 45 1 7.9478 -6.3570 -0.0353 46 1 8.8250 -5.2739 1.0965 47 1 7.4291 -3.4353 0.6219 48 1 6.2578 -4.7183 0.1896 49 1 3.3305 -2.5034 -2.5742 50 1 4.4763 -1.1454 -2.7854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481483162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:42 Heat of formation + Delta-G solvation = -63.995362 kcal Electronic energy + Delta-G solvation = -28912.469455 eV Core-core repulsion = 24939.073768 eV Total energy + Delta-G solvation = -3973.395687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48265 -40.53020 -39.33431 -38.48817 -37.50503 -36.18799 -33.32046 -33.12079 -30.71763 -30.37456 -29.57320 -29.24361 -27.41691 -26.37131 -24.83828 -23.44207 -21.93908 -21.85704 -21.44083 -20.93609 -19.92045 -19.39175 -18.32835 -17.80774 -17.46464 -16.92682 -16.90310 -16.57085 -16.28376 -15.86909 -15.61676 -15.35545 -15.26914 -15.06650 -14.74439 -14.45117 -13.94807 -13.83769 -13.65801 -13.60722 -13.38441 -13.34061 -13.04421 -12.91263 -12.78477 -12.66701 -12.60522 -12.48304 -12.29479 -12.08578 -11.91860 -11.87633 -11.85369 -11.62766 -11.46664 -11.41679 -11.08430 -10.31708 -10.11897 -10.08310 -9.56012 -9.22895 -8.90891 -6.04605 0.32208 1.53615 1.54893 1.82774 1.90212 2.02960 2.15681 2.40159 2.69400 3.17868 3.22560 3.35247 3.59296 3.61899 3.70864 3.80051 4.05201 4.08931 4.12630 4.25137 4.26022 4.26418 4.32651 4.40022 4.41228 4.49142 4.55975 4.62834 4.64722 4.72745 4.74887 4.80407 4.87501 4.91913 4.95096 4.99147 5.10031 5.16997 5.18674 5.25437 5.31133 5.36177 5.43648 5.52107 5.60923 5.92215 5.98854 6.16995 6.41548 6.59854 6.77778 7.01482 7.46889 7.96033 8.56744 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.002219 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.115622 B =12615.263918 C =13519.433302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.528 5.528 3 C 0.056 3.944 4 C 0.448 3.552 5 O -0.605 6.605 6 N -0.591 5.591 7 C -0.405 4.405 8 H 0.075 0.925 9 C -0.045 4.045 10 N -0.920 5.920 11 Si 1.133 2.867 12 H -0.275 1.275 13 H -0.272 1.272 14 H -0.272 1.272 15 C 0.070 3.930 16 C -0.090 4.090 17 H 0.072 0.928 18 C -0.111 4.111 19 C 0.096 3.904 20 N -0.613 5.613 21 C 0.571 3.429 22 O -0.593 6.593 23 C -0.213 4.213 24 C -0.071 4.071 25 C -0.104 4.104 26 C -0.120 4.120 27 C -0.094 4.094 28 C 0.114 3.886 29 H 0.025 0.975 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.382 0.618 35 H 0.258 0.742 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.127 0.873 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.104 -22.621 -6.837 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.253 5.253 3 C -0.075 4.075 4 C 0.235 3.765 5 O -0.490 6.490 6 N -0.231 5.231 7 C -0.535 4.535 8 H 0.093 0.907 9 C -0.243 4.243 10 N -0.559 5.559 11 Si 0.953 3.047 12 H -0.199 1.199 13 H -0.198 1.198 14 H -0.197 1.197 15 C -0.058 4.058 16 C -0.110 4.110 17 H 0.091 0.909 18 C -0.149 4.149 19 C -0.026 4.026 20 N -0.344 5.344 21 C 0.363 3.637 22 O -0.476 6.476 23 C -0.216 4.216 24 C -0.091 4.091 25 C -0.141 4.141 26 C -0.158 4.158 27 C -0.131 4.131 28 C -0.009 4.009 29 H 0.043 0.957 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.216 0.784 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.145 0.855 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.098 0.902 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.063 -21.760 -5.612 24.231 hybrid contribution -0.248 -0.271 -2.299 2.329 sum 8.815 -22.031 -7.911 25.013 Atomic orbital electron populations 1.22436 0.86464 1.02365 1.00750 1.61466 1.08722 1.11514 1.43562 1.21803 1.01947 0.90143 0.93649 1.20736 0.83440 0.81840 0.90445 1.90466 1.44516 1.65059 1.48941 1.42034 1.51046 1.12380 1.17602 1.20498 1.37437 0.99255 0.96283 0.90741 1.27809 0.94730 0.93951 1.07777 1.70974 1.37474 1.39512 1.07974 0.82640 0.76913 0.75348 0.69833 1.19934 1.19777 1.19740 1.22101 0.94443 0.98488 0.90785 1.22257 0.95899 0.98164 0.94693 0.90924 1.22583 0.96474 0.96629 0.99246 1.22635 0.98131 1.01362 0.80458 1.48418 1.21287 1.51535 1.13198 1.18212 0.81351 0.78447 0.85686 1.90754 1.80000 1.60319 1.16557 1.21862 0.95828 1.05173 0.98728 1.24338 0.93395 0.91958 0.99440 1.21553 0.97922 1.00483 0.94108 1.22520 0.95304 0.98608 0.99343 1.21670 1.01368 0.99381 0.90665 1.22207 0.89017 0.93708 0.96017 0.95694 0.89470 0.92685 0.91804 0.87764 0.78391 0.93095 0.88366 0.93460 0.90301 0.89355 0.88945 0.90249 0.85494 0.88642 0.88506 0.90168 0.88879 0.89859 0.89419 0.90168 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.19 127.69 1.17 1.99 16 2 N -0.53 -15.45 4.37 -927.05 -4.05 -19.50 16 3 C 0.06 1.86 5.28 85.56 0.45 2.31 16 4 C 0.45 20.82 7.54 87.66 0.66 21.48 16 5 O -0.60 -32.49 13.88 -3.08 -0.04 -32.53 16 6 N -0.59 -29.89 5.28 -306.97 -1.62 -31.52 16 7 C -0.41 -23.03 9.68 84.04 0.81 -22.21 16 8 H 0.07 4.52 7.16 -2.91 -0.02 4.50 16 9 C -0.04 -2.44 5.50 84.93 0.47 -1.97 16 10 N -0.92 -51.62 13.68 21.66 0.30 -51.33 16 11 Si 1.13 48.43 29.92 68.60 2.05 50.49 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 14 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 15 C 0.07 1.44 4.45 86.30 0.38 1.83 16 16 C -0.09 -1.84 3.09 -9.40 -0.03 -1.87 16 17 H 0.07 1.71 6.68 -2.39 -0.02 1.70 16 18 C -0.11 -2.03 6.36 31.79 0.20 -1.82 16 19 C 0.10 1.55 5.23 86.73 0.45 2.01 16 20 N -0.61 -13.36 3.33 -816.04 -2.71 -16.07 16 21 C 0.57 14.80 7.81 86.57 0.68 15.48 16 22 O -0.59 -20.04 17.08 -4.08 -0.07 -20.11 16 23 C -0.21 -4.11 6.05 -18.57 -0.11 -4.23 16 24 C -0.07 -1.19 10.43 24.66 0.26 -0.94 16 25 C -0.10 -1.01 6.80 30.52 0.21 -0.80 16 26 C -0.12 -1.04 7.17 31.73 0.23 -0.81 16 27 C -0.09 -1.19 4.72 30.57 0.14 -1.04 16 28 C 0.11 2.37 6.36 86.85 0.55 2.92 16 29 H 0.02 0.67 8.08 -2.38 -0.02 0.65 16 30 H 0.09 2.03 7.85 -2.39 -0.02 2.01 16 31 H 0.05 2.10 5.99 -2.39 -0.01 2.09 16 32 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 33 H 0.10 3.13 6.57 -2.39 -0.02 3.11 16 34 H 0.38 17.94 6.73 -92.71 -0.62 17.31 16 35 H 0.26 14.04 6.77 -92.71 -0.63 13.42 16 36 H 0.10 1.68 7.60 -2.38 -0.02 1.66 16 37 H 0.05 0.92 8.00 -2.39 -0.02 0.90 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 1.42 7.93 -2.39 -0.02 1.40 16 40 H 0.09 1.15 6.32 -2.39 -0.02 1.14 16 41 H 0.08 1.22 6.46 -2.39 -0.02 1.20 16 42 H 0.13 2.30 8.04 -2.91 -0.02 2.28 16 43 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.08 1.02 7.27 -2.38 -0.02 1.00 16 48 H 0.09 0.96 5.51 -2.39 -0.01 0.95 16 49 H 0.08 1.50 8.04 -2.39 -0.02 1.48 16 50 H 0.06 1.52 8.09 -2.39 -0.02 1.50 16 Total: -1.00 -76.10 392.37 0.85 -75.25 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: 0.47 Total: 33.00 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 6.53 Total: 12.31 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -8.09 Total: -118.41 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -0.11 Total: -52.64 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.05 Total: 50.49 kcal Total: -76.10 0.85 -75.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481483162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.257 kcal (2) G-P(sol) polarization free energy of solvation -76.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds