Wall clock time and date at job start Tue Mar 31 2020 18:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00063 * 2 1 4 4 C 1.50697 * 109.47143 * 66.04120 * 3 2 1 5 5 O 1.21297 * 120.00262 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00365 * 180.02562 * 4 3 2 7 7 C 1.37101 * 120.00290 * 180.02562 * 6 4 3 8 8 H 1.07999 * 119.99867 * 359.97438 * 7 6 4 9 9 C 1.38942 * 119.99960 * 180.02562 * 7 6 4 10 10 N 1.31418 * 120.00091 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00323 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46898 * 89.99674 * 11 9 7 13 13 H 1.48496 * 109.47618 * 209.99977 * 11 9 7 14 14 H 1.48503 * 109.47053 * 330.00368 * 11 9 7 15 15 C 1.46902 * 111.00312 * 236.04760 * 2 1 3 16 16 C 1.53003 * 109.46844 * 293.95139 * 15 2 1 17 17 H 1.09010 * 110.91353 * 51.10043 * 16 15 2 18 18 C 1.55443 * 111.12005 * 287.10592 * 16 15 2 19 19 C 1.54323 * 102.96818 * 206.46496 * 18 16 15 20 20 N 1.47026 * 107.27297 * 22.19058 * 19 18 16 21 21 C 1.34775 * 125.64934 * 181.04116 * 20 19 18 22 22 O 1.21615 * 119.99755 * 175.88001 * 21 20 19 23 23 C 1.47098 * 120.00069 * 355.87370 * 21 20 19 24 24 C 1.32613 * 124.61827 * 184.80864 * 23 21 20 25 25 C 1.51118 * 110.75630 * 179.84374 * 24 23 21 26 26 C 1.54575 * 104.90118 * 343.80434 * 25 24 23 27 27 C 1.51115 * 124.61832 * 5.10528 * 23 21 20 28 28 C 1.47428 * 108.70412 * 1.06044 * 20 19 18 29 29 H 1.08999 * 109.46844 * 183.95245 * 1 2 3 30 30 H 1.08991 * 109.47235 * 303.95628 * 1 2 3 31 31 H 1.09004 * 109.46651 * 63.95789 * 1 2 3 32 32 H 1.08991 * 109.47437 * 186.04282 * 3 2 1 33 33 H 1.09007 * 109.47132 * 306.04934 * 3 2 1 34 34 H 0.97003 * 119.99684 * 0.02562 * 6 4 3 35 35 H 0.96996 * 119.99695 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.47206 * 173.95334 * 15 2 1 37 37 H 1.08996 * 109.47080 * 53.95026 * 15 2 1 38 38 H 1.08995 * 110.70890 * 88.08813 * 18 16 15 39 39 H 1.09006 * 110.85327 * 324.90269 * 18 16 15 40 40 H 1.08991 * 109.88244 * 262.77510 * 19 18 16 41 41 H 1.08998 * 110.01069 * 141.67583 * 19 18 16 42 42 H 1.07994 * 124.62272 * 359.97438 * 24 23 21 43 43 H 1.08997 * 110.51818 * 224.84897 * 25 24 23 44 44 H 1.08997 * 110.24675 * 102.61596 * 25 24 23 45 45 H 1.08998 * 110.98482 * 266.71145 * 26 25 24 46 46 H 1.09000 * 110.98426 * 142.91145 * 26 25 24 47 47 H 1.08992 * 110.36737 * 315.43811 * 27 23 21 48 48 H 1.09003 * 110.36011 * 77.76094 * 27 23 21 49 49 H 1.08993 * 110.36903 * 94.70960 * 28 20 19 50 50 H 1.09000 * 110.36724 * 216.92932 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0053 1.4454 2.1411 6 7 2.0179 3.3202 1.5233 7 6 1.6921 3.9348 2.7047 8 1 1.1297 3.3989 3.4550 9 6 2.0845 5.2474 2.9363 10 7 1.7718 5.8367 4.0686 11 14 3.0565 6.1746 1.6383 12 1 2.1190 6.8777 0.7261 13 1 3.9427 7.1667 2.2981 14 1 3.8805 5.2163 0.8585 15 6 1.9955 -0.7659 -1.1376 16 6 1.6316 -2.2426 -0.9703 17 1 0.5661 -2.3608 -0.7728 18 6 2.4828 -2.9060 0.1485 19 6 2.5099 -4.3907 -0.2713 20 7 2.2324 -4.4415 -1.7143 21 6 2.1491 -5.5616 -2.4592 22 8 1.8399 -5.4895 -3.6332 23 6 2.4323 -6.8713 -1.8523 24 6 2.4670 -8.0181 -2.5173 25 6 2.7898 -9.1660 -1.5889 26 6 3.3571 -8.4993 -0.3149 27 6 2.7170 -7.0941 -0.3850 28 6 2.0608 -3.0643 -2.2115 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3633 0.5740 0.8523 31 1 -0.3633 0.4512 -0.9234 32 1 3.0797 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8309 34 1 2.5227 3.8017 0.8492 35 1 2.0460 6.7529 4.2303 36 1 3.0798 -0.6610 -1.1756 37 1 1.5612 -0.3872 -2.0628 38 1 2.0018 -2.7885 1.1195 39 1 3.4909 -2.4917 0.1663 40 1 1.7446 -4.9439 0.2730 41 1 3.4917 -4.8181 -0.0675 42 1 2.2909 -8.1179 -3.5781 43 1 3.5354 -9.8223 -2.0378 44 1 1.8851 -9.7263 -1.3531 45 1 4.4443 -8.4355 -0.3588 46 1 3.0347 -9.0309 0.5804 47 1 3.4130 -6.3413 -0.0151 48 1 1.7906 -7.0702 0.1889 49 1 3.0014 -2.6851 -2.6107 50 1 1.2842 -3.0308 -2.9756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481483163.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:46 Heat of formation + Delta-G solvation = -31.665100 kcal Electronic energy + Delta-G solvation = -28614.089453 eV Core-core repulsion = 24642.095712 eV Total energy + Delta-G solvation = -3971.993741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.66447 -39.03759 -38.38798 -37.60787 -36.21593 -33.93667 -32.34929 -31.67225 -30.00143 -29.76451 -28.76347 -27.98317 -26.57383 -24.82344 -23.85792 -22.27459 -21.35484 -20.89395 -20.20861 -19.34320 -18.69244 -18.23604 -17.14087 -16.83697 -16.17244 -15.97185 -15.52811 -15.38697 -15.19589 -14.93920 -14.36982 -14.04663 -14.00791 -13.67439 -13.48657 -13.21173 -13.12021 -12.98301 -12.78236 -12.57090 -12.43050 -12.31905 -12.08779 -12.03052 -11.85050 -11.71577 -11.65904 -11.42763 -11.36928 -11.08975 -10.99160 -10.86431 -10.60534 -10.57047 -10.16222 -9.98338 -9.54319 -9.40542 -8.79852 -8.57851 -8.18773 -7.96623 -6.31808 -3.83167 1.04502 2.71549 2.99116 3.01789 3.05941 3.14436 3.73375 3.81889 4.00427 4.09508 4.12715 4.38083 4.41338 4.55035 4.62628 4.72201 4.81501 4.84631 4.95701 5.05188 5.17137 5.19442 5.21858 5.26260 5.33820 5.35319 5.37851 5.47042 5.51330 5.54380 5.56270 5.63870 5.66775 5.72875 5.73722 5.83103 5.86422 5.88943 5.95537 6.02345 6.09522 6.15404 6.18121 6.50669 7.14331 7.24247 7.29398 7.58043 7.91094 8.14061 8.59719 8.94769 9.42001 9.83118 10.81307 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028428 B = 0.001854 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.691598 B =15095.997182 C =15479.531233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.515 5.515 3 C 0.043 3.957 4 C 0.453 3.547 5 O -0.559 6.559 6 N -0.592 5.592 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.882 5.882 11 Si 0.879 3.121 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.065 3.935 16 C -0.095 4.095 17 H 0.089 0.911 18 C -0.118 4.118 19 C 0.093 3.907 20 N -0.612 5.612 21 C 0.580 3.420 22 O -0.546 6.546 23 C -0.189 4.189 24 C -0.076 4.076 25 C -0.107 4.107 26 C -0.125 4.125 27 C -0.102 4.102 28 C 0.111 3.889 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.015 0.985 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.137 0.863 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 -25.071 -12.755 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.239 5.239 3 C -0.088 4.088 4 C 0.239 3.761 5 O -0.441 6.441 6 N -0.231 5.231 7 C -0.433 4.433 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.522 5.522 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.064 4.064 16 C -0.115 4.115 17 H 0.107 0.893 18 C -0.155 4.155 19 C -0.030 4.030 20 N -0.345 5.345 21 C 0.371 3.629 22 O -0.425 6.425 23 C -0.192 4.192 24 C -0.096 4.096 25 C -0.144 4.144 26 C -0.162 4.162 27 C -0.139 4.139 28 C -0.012 4.012 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.033 0.967 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.203 0.797 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.155 0.845 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.098 0.902 49 H 0.088 0.912 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.068 -25.532 -12.247 28.608 hybrid contribution 0.535 1.402 -1.700 2.267 sum 4.603 -24.131 -13.947 28.249 Atomic orbital electron populations 1.22600 0.86689 1.02104 1.01504 1.61528 1.08760 1.12404 1.41203 1.21895 1.00754 0.89294 0.96904 1.19639 0.85086 0.82392 0.88988 1.90525 1.42646 1.64094 1.46800 1.42223 1.50983 1.12016 1.17917 1.19419 1.33704 0.96183 0.93954 0.86273 1.25035 0.97895 0.96518 0.96731 1.69623 1.45812 1.13541 1.23200 0.86679 0.80488 0.80548 0.81707 1.19695 1.20191 1.19488 1.22042 1.00279 0.92055 0.91980 1.22413 1.01047 0.93922 0.94102 0.89279 1.22694 1.01236 0.91882 0.99730 1.22567 1.00972 0.98822 0.80611 1.48318 1.70361 1.05981 1.09831 1.17662 0.76970 0.83002 0.85260 1.90794 1.48647 1.86862 1.16218 1.21758 1.07266 0.93049 0.97098 1.24040 0.92471 0.93388 0.99717 1.21482 1.01544 0.96723 0.94657 1.22461 1.00630 0.95370 0.97779 1.21717 1.01493 0.98006 0.92664 1.22243 1.01546 0.80510 0.96929 0.91945 0.88543 0.96695 0.89304 0.93378 0.79750 0.91635 0.90494 0.94684 0.88963 0.90283 0.91029 0.90684 0.84538 0.90216 0.89657 0.90802 0.90431 0.89518 0.90166 0.91212 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.99 60.07 0.54 0.82 16 2 N -0.52 -7.59 4.45 -244.37 -1.09 -8.68 16 3 C 0.04 0.69 5.45 -4.98 -0.03 0.66 16 4 C 0.45 9.96 7.47 -10.99 -0.08 9.88 16 5 O -0.56 -14.39 13.91 5.54 0.08 -14.31 16 6 N -0.59 -13.80 5.09 -10.96 -0.06 -13.85 16 7 C -0.30 -8.46 10.16 -14.93 -0.15 -8.61 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 9 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 10 N -0.88 -25.53 13.96 55.50 0.77 -24.75 16 11 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 15 C 0.07 0.71 4.42 -3.82 -0.02 0.70 16 16 C -0.10 -0.95 2.99 -88.31 -0.26 -1.21 16 17 H 0.09 0.95 6.30 -51.92 -0.33 0.62 16 18 C -0.12 -1.08 6.38 -24.74 -0.16 -1.24 16 19 C 0.09 0.75 5.21 -3.06 -0.02 0.73 16 20 N -0.61 -6.39 3.33 -171.91 -0.57 -6.96 16 21 C 0.58 7.05 7.82 -12.67 -0.10 6.96 16 22 O -0.55 -8.54 17.01 5.26 0.09 -8.45 16 23 C -0.19 -1.75 6.05 -102.73 -0.62 -2.37 16 24 C -0.08 -0.61 10.44 -36.00 -0.38 -0.99 16 25 C -0.11 -0.57 6.80 -26.85 -0.18 -0.75 16 26 C -0.12 -0.63 7.16 -25.07 -0.18 -0.81 16 27 C -0.10 -0.67 4.83 -26.85 -0.13 -0.80 16 28 C 0.11 1.12 6.39 -2.52 -0.02 1.10 16 29 H 0.06 0.82 6.33 -51.93 -0.33 0.49 16 30 H 0.10 1.80 5.82 -51.93 -0.30 1.49 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 33 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.08 0.77 7.77 -51.93 -0.40 0.37 16 37 H 0.04 0.37 8.12 -51.93 -0.42 -0.06 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16 40 H 0.07 0.53 6.98 -51.93 -0.36 0.17 16 41 H 0.08 0.51 5.95 -51.93 -0.31 0.20 16 42 H 0.14 1.12 8.04 -52.49 -0.42 0.70 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 0.52 4.94 -51.93 -0.26 0.26 16 48 H 0.08 0.49 7.69 -51.93 -0.40 0.09 16 49 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 50 H 0.08 0.86 8.00 -51.93 -0.42 0.45 16 LS Contribution 390.53 15.07 5.89 5.89 Total: -1.00 -34.07 390.53 -9.42 -43.49 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -7.94 Total: 8.11 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.88 Total: 5.09 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.94 Total: -54.25 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.17 Total: -22.76 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.07 -9.42 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481483163.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.823 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds