Wall clock time and date at job start Tue Mar 31 2020 18:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00063 * 2 1 4 4 C 1.50697 * 109.47143 * 66.04120 * 3 2 1 5 5 O 1.21297 * 120.00262 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00365 * 180.02562 * 4 3 2 7 7 C 1.37101 * 120.00290 * 180.02562 * 6 4 3 8 8 H 1.07999 * 119.99867 * 359.97438 * 7 6 4 9 9 C 1.38942 * 119.99960 * 180.02562 * 7 6 4 10 10 N 1.31418 * 120.00091 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00323 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46898 * 89.99674 * 11 9 7 13 13 H 1.48496 * 109.47618 * 209.99977 * 11 9 7 14 14 H 1.48503 * 109.47053 * 330.00368 * 11 9 7 15 15 C 1.46902 * 111.00312 * 236.04760 * 2 1 3 16 16 C 1.53003 * 109.46844 * 293.95139 * 15 2 1 17 17 H 1.09010 * 110.91353 * 51.10043 * 16 15 2 18 18 C 1.55443 * 111.12005 * 287.10592 * 16 15 2 19 19 C 1.54323 * 102.96818 * 206.46496 * 18 16 15 20 20 N 1.47026 * 107.27297 * 22.19058 * 19 18 16 21 21 C 1.34775 * 125.64934 * 181.04116 * 20 19 18 22 22 O 1.21615 * 119.99755 * 175.88001 * 21 20 19 23 23 C 1.47098 * 120.00069 * 355.87370 * 21 20 19 24 24 C 1.32613 * 124.61827 * 184.80864 * 23 21 20 25 25 C 1.51118 * 110.75630 * 179.84374 * 24 23 21 26 26 C 1.54575 * 104.90118 * 343.80434 * 25 24 23 27 27 C 1.51115 * 124.61832 * 5.10528 * 23 21 20 28 28 C 1.47428 * 108.70412 * 1.06044 * 20 19 18 29 29 H 1.08999 * 109.46844 * 183.95245 * 1 2 3 30 30 H 1.08991 * 109.47235 * 303.95628 * 1 2 3 31 31 H 1.09004 * 109.46651 * 63.95789 * 1 2 3 32 32 H 1.08991 * 109.47437 * 186.04282 * 3 2 1 33 33 H 1.09007 * 109.47132 * 306.04934 * 3 2 1 34 34 H 0.97003 * 119.99684 * 0.02562 * 6 4 3 35 35 H 0.96996 * 119.99695 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.47206 * 173.95334 * 15 2 1 37 37 H 1.08996 * 109.47080 * 53.95026 * 15 2 1 38 38 H 1.08995 * 110.70890 * 88.08813 * 18 16 15 39 39 H 1.09006 * 110.85327 * 324.90269 * 18 16 15 40 40 H 1.08991 * 109.88244 * 262.77510 * 19 18 16 41 41 H 1.08998 * 110.01069 * 141.67583 * 19 18 16 42 42 H 1.07994 * 124.62272 * 359.97438 * 24 23 21 43 43 H 1.08997 * 110.51818 * 224.84897 * 25 24 23 44 44 H 1.08997 * 110.24675 * 102.61596 * 25 24 23 45 45 H 1.08998 * 110.98482 * 266.71145 * 26 25 24 46 46 H 1.09000 * 110.98426 * 142.91145 * 26 25 24 47 47 H 1.08992 * 110.36737 * 315.43811 * 27 23 21 48 48 H 1.09003 * 110.36011 * 77.76094 * 27 23 21 49 49 H 1.08993 * 110.36903 * 94.70960 * 28 20 19 50 50 H 1.09000 * 110.36724 * 216.92932 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0053 1.4454 2.1411 6 7 2.0179 3.3202 1.5233 7 6 1.6921 3.9348 2.7047 8 1 1.1297 3.3989 3.4550 9 6 2.0845 5.2474 2.9363 10 7 1.7718 5.8367 4.0686 11 14 3.0565 6.1746 1.6383 12 1 2.1190 6.8777 0.7261 13 1 3.9427 7.1667 2.2981 14 1 3.8805 5.2163 0.8585 15 6 1.9955 -0.7659 -1.1376 16 6 1.6316 -2.2426 -0.9703 17 1 0.5661 -2.3608 -0.7728 18 6 2.4828 -2.9060 0.1485 19 6 2.5099 -4.3907 -0.2713 20 7 2.2324 -4.4415 -1.7143 21 6 2.1491 -5.5616 -2.4592 22 8 1.8399 -5.4895 -3.6332 23 6 2.4323 -6.8713 -1.8523 24 6 2.4670 -8.0181 -2.5173 25 6 2.7898 -9.1660 -1.5889 26 6 3.3571 -8.4993 -0.3149 27 6 2.7170 -7.0941 -0.3850 28 6 2.0608 -3.0643 -2.2115 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3633 0.5740 0.8523 31 1 -0.3633 0.4512 -0.9234 32 1 3.0797 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8309 34 1 2.5227 3.8017 0.8492 35 1 2.0460 6.7529 4.2303 36 1 3.0798 -0.6610 -1.1756 37 1 1.5612 -0.3872 -2.0628 38 1 2.0018 -2.7885 1.1195 39 1 3.4909 -2.4917 0.1663 40 1 1.7446 -4.9439 0.2730 41 1 3.4917 -4.8181 -0.0675 42 1 2.2909 -8.1179 -3.5781 43 1 3.5354 -9.8223 -2.0378 44 1 1.8851 -9.7263 -1.3531 45 1 4.4443 -8.4355 -0.3588 46 1 3.0347 -9.0309 0.5804 47 1 3.4130 -6.3413 -0.0151 48 1 1.7906 -7.0702 0.1889 49 1 3.0014 -2.6851 -2.6107 50 1 1.2842 -3.0308 -2.9756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481483163.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:45 Heat of formation + Delta-G solvation = -56.137538 kcal Electronic energy + Delta-G solvation = -28615.150658 eV Core-core repulsion = 24642.095712 eV Total energy + Delta-G solvation = -3973.054946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45994 -40.48383 -39.32453 -38.47278 -37.40714 -35.87202 -33.72694 -33.25666 -30.70942 -30.39955 -29.64493 -29.07204 -27.57187 -26.45585 -24.83611 -23.35586 -21.90265 -21.59151 -21.20343 -21.04885 -20.12045 -19.39102 -17.97685 -17.81648 -17.33690 -16.82171 -16.73949 -16.63670 -16.37308 -16.07534 -15.56906 -15.30576 -15.08550 -14.80082 -14.71395 -14.35971 -14.30777 -13.88210 -13.71504 -13.62944 -13.58163 -13.33391 -13.10882 -12.88443 -12.75060 -12.65525 -12.58070 -12.38873 -12.37027 -12.28630 -12.06754 -11.96489 -11.84229 -11.58822 -11.43712 -11.32517 -11.05952 -10.32036 -10.19605 -10.09178 -9.53142 -9.15936 -8.38639 -5.98848 0.33898 1.31724 1.36929 1.45758 1.92982 2.00645 2.17759 2.24873 2.63615 3.18007 3.22811 3.38272 3.61341 3.64722 3.73357 3.86659 4.08301 4.13445 4.15508 4.26792 4.32450 4.34397 4.39749 4.42232 4.49593 4.51567 4.59910 4.66626 4.70599 4.75144 4.80027 4.82421 4.90938 4.94955 4.96978 5.03478 5.14053 5.18818 5.22484 5.28547 5.35545 5.39640 5.46270 5.54229 5.56124 5.93243 6.04562 6.21901 6.44079 6.63322 6.92398 7.04056 7.44124 8.01957 8.78994 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028428 B = 0.001854 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.691598 B =15095.997182 C =15479.531233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.532 5.532 3 C 0.054 3.946 4 C 0.452 3.548 5 O -0.603 6.603 6 N -0.594 5.594 7 C -0.324 4.324 8 H 0.056 0.944 9 C -0.016 4.016 10 N -0.936 5.936 11 Si 0.963 3.037 12 H -0.259 1.259 13 H -0.277 1.277 14 H -0.230 1.230 15 C 0.069 3.931 16 C -0.088 4.088 17 H 0.079 0.921 18 C -0.114 4.114 19 C 0.095 3.905 20 N -0.612 5.612 21 C 0.571 3.429 22 O -0.594 6.594 23 C -0.212 4.212 24 C -0.072 4.072 25 C -0.104 4.104 26 C -0.121 4.121 27 C -0.098 4.098 28 C 0.112 3.888 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.029 0.971 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.389 0.611 35 H 0.278 0.722 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.127 0.873 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.853 -26.088 -14.958 30.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.256 5.256 3 C -0.077 4.077 4 C 0.240 3.760 5 O -0.487 6.487 6 N -0.237 5.237 7 C -0.454 4.454 8 H 0.074 0.926 9 C -0.215 4.215 10 N -0.577 5.577 11 Si 0.784 3.216 12 H -0.184 1.184 13 H -0.202 1.202 14 H -0.153 1.153 15 C -0.058 4.058 16 C -0.108 4.108 17 H 0.098 0.902 18 C -0.152 4.152 19 C -0.026 4.026 20 N -0.344 5.344 21 C 0.363 3.637 22 O -0.477 6.477 23 C -0.215 4.215 24 C -0.092 4.092 25 C -0.141 4.141 26 C -0.158 4.158 27 C -0.135 4.135 28 C -0.011 4.011 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.140 0.860 33 H 0.094 0.906 34 H 0.224 0.776 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.145 0.855 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.097 0.903 46 H 0.111 0.889 47 H 0.110 0.890 48 H 0.102 0.898 49 H 0.098 0.902 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.429 -26.572 -14.444 30.920 hybrid contribution -0.303 1.591 -0.961 1.883 sum 6.125 -24.981 -15.405 29.982 Atomic orbital electron populations 1.22442 0.87322 1.02360 1.00205 1.61457 1.08432 1.12099 1.43634 1.21836 1.02867 0.89671 0.93337 1.20912 0.82831 0.81687 0.90540 1.90519 1.44035 1.65088 1.49080 1.42058 1.51938 1.12728 1.16938 1.18988 1.34553 0.96888 0.94923 0.92612 1.26093 0.98760 0.97031 0.99593 1.69809 1.47471 1.14280 1.26143 0.85384 0.78901 0.79082 0.78280 1.18411 1.20194 1.15289 1.22090 1.01208 0.91643 0.90894 1.22298 1.00627 0.93586 0.94285 0.90223 1.22658 1.01205 0.92489 0.98847 1.22677 1.02337 0.98393 0.79202 1.48414 1.69435 1.05781 1.10724 1.18197 0.76323 0.84279 0.84878 1.90755 1.51112 1.87629 1.18222 1.21856 1.08898 0.91895 0.98825 1.24327 0.90761 0.94309 0.99805 1.21545 1.02480 0.95861 0.94174 1.22488 1.00829 0.94343 0.98166 1.21728 1.01909 0.99209 0.90650 1.22220 1.01621 0.80615 0.96637 0.90562 0.92895 0.95215 0.86032 0.90643 0.77603 0.91269 0.88706 0.93428 0.90019 0.89668 0.90194 0.88826 0.85511 0.88756 0.88484 0.90318 0.88870 0.89006 0.89843 0.90217 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 8.99 127.69 1.15 1.87 16 2 N -0.53 -14.53 4.45 -927.06 -4.13 -18.65 16 3 C 0.05 1.56 5.45 85.56 0.47 2.03 16 4 C 0.45 19.74 7.47 87.66 0.66 20.39 16 5 O -0.60 -32.25 13.91 -3.08 -0.04 -32.30 16 6 N -0.59 -27.41 5.09 -306.99 -1.56 -28.97 16 7 C -0.32 -18.75 10.16 84.04 0.85 -17.89 16 8 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 9 C -0.02 -0.91 5.50 84.92 0.47 -0.44 16 10 N -0.94 -56.19 13.96 21.66 0.30 -55.89 16 11 Si 0.96 38.38 27.74 68.60 1.90 40.28 16 12 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 13 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 14 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 15 C 0.07 1.30 4.42 86.30 0.38 1.68 16 16 C -0.09 -1.59 2.99 -9.30 -0.03 -1.61 16 17 H 0.08 1.60 6.30 -2.38 -0.02 1.58 16 18 C -0.11 -1.87 6.38 31.88 0.20 -1.66 16 19 C 0.10 1.36 5.21 86.73 0.45 1.81 16 20 N -0.61 -12.13 3.33 -816.05 -2.71 -14.85 16 21 C 0.57 13.77 7.82 86.57 0.68 14.45 16 22 O -0.59 -19.07 17.01 -4.08 -0.07 -19.14 16 23 C -0.21 -3.73 6.05 -18.57 -0.11 -3.84 16 24 C -0.07 -1.09 10.44 24.66 0.26 -0.83 16 25 C -0.10 -0.86 6.80 30.52 0.21 -0.65 16 26 C -0.12 -0.89 7.16 31.67 0.23 -0.66 16 27 C -0.10 -1.08 4.83 30.52 0.15 -0.93 16 28 C 0.11 2.11 6.39 86.86 0.55 2.67 16 29 H 0.08 1.95 6.33 -2.39 -0.02 1.94 16 30 H 0.05 2.02 5.82 -2.39 -0.01 2.01 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.12 2.80 7.93 -2.39 -0.02 2.78 16 33 H 0.08 1.84 8.12 -2.38 -0.02 1.82 16 34 H 0.39 14.79 5.76 -92.71 -0.53 14.26 16 35 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.09 1.49 7.77 -2.39 -0.02 1.47 16 37 H 0.05 0.81 8.12 -2.39 -0.02 0.79 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.31 7.93 -2.38 -0.02 1.29 16 40 H 0.08 1.04 6.98 -2.39 -0.02 1.02 16 41 H 0.09 1.03 5.95 -2.39 -0.01 1.02 16 42 H 0.13 2.10 8.04 -2.91 -0.02 2.08 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.09 0.42 8.14 -2.39 -0.02 0.41 16 47 H 0.09 0.87 4.94 -2.39 -0.01 0.86 16 48 H 0.08 0.85 7.69 -2.39 -0.02 0.83 16 49 H 0.08 1.35 8.04 -2.39 -0.02 1.33 16 50 H 0.06 1.41 8.00 -2.39 -0.02 1.39 16 Total: -1.00 -81.08 390.53 0.60 -80.48 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.36 Total: 32.67 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 6.56 Total: 16.37 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -8.10 Total: -118.36 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -0.11 Total: -51.44 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.90 Total: 40.28 kcal Total: -81.08 0.60 -80.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481483163.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.342 kcal (2) G-P(sol) polarization free energy of solvation -81.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds