Wall clock time and date at job start Tue Mar 31 2020 18:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47058 * 74.30867 * 3 2 1 5 5 C 1.53008 * 109.47177 * 179.97438 * 4 3 2 6 6 C 1.50690 * 109.47320 * 180.02562 * 5 4 3 7 7 O 1.21287 * 120.00098 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00056 * 180.02562 * 6 5 4 9 9 C 1.47018 * 125.65029 * 359.95931 * 8 6 5 10 10 C 1.54372 * 107.29103 * 181.13095 * 9 8 6 11 11 C 1.55157 * 102.92010 * 22.13544 * 10 9 8 12 12 H 1.09003 * 111.00188 * 82.64231 * 11 10 9 13 13 C 1.53004 * 111.00251 * 206.45481 * 11 10 9 14 14 N 1.46896 * 109.47166 * 290.41738 * 13 11 10 15 15 C 1.46897 * 111.00124 * 293.95737 * 14 13 11 16 16 C 1.46902 * 110.99925 * 169.99935 * 14 13 11 17 17 C 1.50696 * 109.46978 * 190.00261 * 16 14 13 18 18 O 1.21295 * 120.00238 * 359.97438 * 17 16 14 19 19 N 1.34777 * 120.00076 * 180.02562 * 17 16 14 20 20 C 1.37105 * 120.00244 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99708 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00017 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99901 * 359.71836 * 22 20 19 24 24 Si 1.86800 * 120.00194 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72227 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72075 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72111 * 24 22 20 28 28 C 1.47431 * 125.64959 * 180.02562 * 8 6 5 29 29 H 4.44644 * 5.63280 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.46847 * 314.31243 * 3 2 1 31 31 H 1.09003 * 109.46939 * 194.31414 * 3 2 1 32 32 H 1.09004 * 109.46984 * 60.00460 * 4 3 2 33 33 H 1.08996 * 109.47842 * 299.99727 * 4 3 2 34 34 H 1.09004 * 109.46513 * 60.00508 * 5 4 3 35 35 H 1.08996 * 109.46786 * 300.00709 * 5 4 3 36 36 H 1.09001 * 109.88040 * 300.51265 * 9 8 6 37 37 H 1.08994 * 109.88145 * 61.67407 * 9 8 6 38 38 H 1.08999 * 110.69934 * 263.79182 * 10 9 8 39 39 H 1.08997 * 110.75905 * 140.50575 * 10 9 8 40 40 H 1.09000 * 109.46595 * 170.42279 * 13 11 10 41 41 H 1.08995 * 109.47112 * 50.42008 * 13 11 10 42 42 H 1.08997 * 109.47316 * 296.04141 * 15 14 13 43 43 H 1.09003 * 109.47554 * 56.04624 * 15 14 13 44 44 H 1.09007 * 109.46965 * 176.04316 * 15 14 13 45 45 H 1.08999 * 109.46697 * 70.00700 * 16 14 13 46 46 H 1.08993 * 109.47253 * 310.00350 * 16 14 13 47 47 H 0.97004 * 119.99652 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00371 * 0.28325 * 23 22 20 49 49 H 1.09003 * 110.36790 * 36.99410 * 28 8 6 50 50 H 1.09006 * 110.45708 * 274.72425 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.3892 -1.3887 5 6 4.6862 -0.3879 -1.3889 6 6 5.1887 -0.7713 -2.7568 7 8 4.4007 -1.0206 -3.6445 8 7 6.5138 -0.8372 -2.9939 9 6 7.5744 -0.5611 -2.0140 10 6 8.9259 -0.7341 -2.7397 11 6 8.5449 -0.5468 -4.2320 12 1 8.4949 0.5104 -4.4928 13 6 9.5235 -1.2883 -5.1451 14 7 10.8306 -0.6188 -5.1083 15 6 10.7510 0.7241 -5.6983 16 6 11.8560 -1.4289 -5.7794 17 6 13.2166 -0.8388 -5.5122 18 8 13.3218 0.1588 -4.8302 19 7 14.3166 -1.4188 -6.0319 20 6 15.5546 -0.8823 -5.7884 21 1 15.6482 0.0054 -5.1805 22 6 16.6886 -1.4806 -6.3237 23 7 16.5750 -2.5640 -7.0588 24 14 18.3753 -0.7492 -5.9925 25 1 18.7045 0.2359 -7.0538 26 1 18.3699 -0.0707 -4.6716 27 1 19.3921 -1.8314 -5.9890 28 6 7.1399 -1.1969 -4.2794 29 1 -1.0499 0.0002 -0.0001 30 1 3.0096 -0.7171 0.7354 31 1 3.0089 0.9966 0.2541 32 1 2.7925 0.3285 -2.1241 33 1 2.7934 -1.3851 -1.6428 34 1 5.0502 -1.1055 -0.6535 35 1 5.0487 0.6081 -1.1350 36 1 7.4809 0.4601 -1.6445 37 1 7.5055 -1.2652 -1.1849 38 1 9.3309 -1.7313 -2.5672 39 1 9.6348 0.0312 -2.4237 40 1 9.1419 -1.2842 -6.1661 41 1 9.6324 -2.3170 -4.8018 42 1 10.4957 0.6423 -6.7548 43 1 9.9844 1.3027 -5.1829 44 1 11.7142 1.2239 -5.5950 45 1 11.6677 -1.4365 -6.8530 46 1 11.8209 -2.4490 -5.3970 47 1 14.2324 -2.2164 -6.5776 48 1 15.6992 -2.9436 -7.2311 49 1 6.5618 -0.7910 -5.1096 50 1 7.2258 -2.2796 -4.3715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481484683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:01 Heat of formation + Delta-G solvation = -19.854043 kcal Electronic energy + Delta-G solvation = -27821.487171 eV Core-core repulsion = 23850.005596 eV Total energy + Delta-G solvation = -3971.481575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43103 -38.91002 -38.04052 -36.28372 -35.90286 -34.23073 -32.85782 -32.06865 -31.10940 -29.72419 -28.62812 -27.81467 -26.49195 -24.59797 -23.65456 -22.48405 -22.09547 -20.20725 -19.57410 -19.42831 -18.50867 -17.89616 -17.28540 -16.91147 -16.36924 -16.00657 -15.46995 -15.40857 -15.26321 -14.66905 -14.36410 -14.22162 -13.99482 -13.77119 -13.68820 -13.59685 -13.29859 -13.10125 -12.89719 -12.66838 -12.48751 -12.29383 -11.98637 -11.82832 -11.49923 -11.42217 -11.32919 -11.21836 -11.16021 -11.03486 -10.87528 -10.63186 -10.61338 -10.48240 -10.22967 -10.10062 -9.86960 -9.52220 -8.92589 -8.53152 -8.05497 -7.93217 -6.76094 -3.89394 2.35796 2.39200 2.46880 2.70977 3.29797 3.34303 3.53294 3.80704 3.84530 3.94402 4.14799 4.29479 4.38350 4.50688 4.56095 4.63580 4.73041 4.90102 4.93291 4.98016 5.04670 5.07720 5.14843 5.17811 5.21300 5.24418 5.33732 5.43946 5.48790 5.57086 5.64139 5.64512 5.66909 5.68770 5.75672 5.83761 5.85456 5.89723 5.95201 6.02115 6.05303 6.14491 6.49130 7.15101 7.22121 7.24755 7.29447 7.80488 7.88163 8.07517 8.59654 8.79836 9.47052 9.87892 10.67410 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.040288 B = 0.001521 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.823382 B =18402.461106 C =18689.290958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.136 4.136 6 C 0.527 3.473 7 O -0.543 6.543 8 N -0.619 5.619 9 C 0.096 3.904 10 C -0.114 4.114 11 C -0.096 4.096 12 H 0.087 0.913 13 C 0.064 3.936 14 N -0.515 5.515 15 C 0.019 3.981 16 C 0.046 3.954 17 C 0.447 3.553 18 O -0.571 6.571 19 N -0.577 5.577 20 C -0.382 4.382 21 H 0.099 0.901 22 C -0.009 4.009 23 N -0.902 5.902 24 Si 1.093 2.907 25 H -0.285 1.285 26 H -0.283 1.283 27 H -0.281 1.281 28 C 0.111 3.889 29 H 0.216 0.784 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.014 0.986 43 H 0.061 0.939 44 H 0.096 0.904 45 H 0.046 0.954 46 H 0.087 0.913 47 H 0.375 0.625 48 H 0.261 0.739 49 H 0.077 0.923 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.460 2.241 11.115 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.176 4.176 6 C 0.316 3.684 7 O -0.421 6.421 8 N -0.354 5.354 9 C -0.027 4.027 10 C -0.152 4.152 11 C -0.115 4.115 12 H 0.106 0.894 13 C -0.064 4.064 14 N -0.238 5.238 15 C -0.128 4.128 16 C -0.086 4.086 17 C 0.233 3.767 18 O -0.455 6.455 19 N -0.215 5.215 20 C -0.511 4.511 21 H 0.117 0.883 22 C -0.212 4.212 23 N -0.541 5.541 24 Si 0.919 3.081 25 H -0.212 1.212 26 H -0.209 1.209 27 H -0.207 1.207 28 C -0.012 4.012 29 H 0.233 0.767 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.053 0.947 41 H 0.095 0.905 42 H 0.033 0.967 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.208 0.792 48 H 0.073 0.927 49 H 0.095 0.905 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.093 2.653 11.326 25.858 hybrid contribution -2.118 -0.455 -0.889 2.342 sum -25.212 2.199 10.437 27.375 Atomic orbital electron populations 1.24933 0.96035 1.01183 1.00661 1.23092 0.94577 1.00393 1.00561 1.18763 0.84915 1.03062 0.98280 1.21291 0.92879 1.03731 0.95873 1.21658 0.97249 1.03947 0.94752 1.20356 0.80410 0.77053 0.90594 1.90720 1.54392 1.49989 1.46985 1.48549 1.05139 1.68550 1.13115 1.22201 0.87440 1.00951 0.92064 1.22587 0.94888 1.03997 0.93737 1.22363 0.92571 1.00666 0.95922 0.89434 1.22040 0.89018 0.97919 0.97456 1.61540 1.03791 1.02775 1.55727 1.22595 1.04447 0.90441 0.95357 1.21866 0.92161 0.97628 0.96899 1.19651 0.84888 0.87061 0.85134 1.90482 1.86148 1.26900 1.41935 1.41952 1.06288 1.26826 1.46420 1.20559 0.83385 1.13462 1.33680 0.88289 1.26489 1.03967 0.95862 0.94844 1.70873 1.26462 1.20167 1.36637 0.83098 0.73189 0.75405 0.76387 1.21157 1.20920 1.20658 1.22219 0.92904 0.99823 0.86299 0.76679 0.89412 0.89399 0.90715 0.90716 0.88611 0.88594 0.91275 0.91270 0.90275 0.89007 0.94749 0.90536 0.96743 0.92051 0.88585 0.93569 0.89492 0.79216 0.92747 0.90499 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.56 19.25 29.55 0.57 -0.99 16 2 C -0.19 -1.51 13.34 -37.12 -0.50 -2.00 16 3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.25 16 4 C -0.10 -0.72 4.46 -26.73 -0.12 -0.84 16 5 C -0.14 -0.86 4.89 -27.88 -0.14 -1.00 16 6 C 0.53 5.46 7.85 -10.99 -0.09 5.38 16 7 O -0.54 -7.80 16.24 5.55 0.09 -7.71 16 8 N -0.62 -5.84 3.33 -170.51 -0.57 -6.41 16 9 C 0.10 0.70 6.49 -3.04 -0.02 0.68 16 10 C -0.11 -1.03 6.32 -24.87 -0.16 -1.19 16 11 C -0.10 -0.94 2.94 -88.48 -0.26 -1.20 16 12 H 0.09 0.91 6.34 -51.93 -0.33 0.58 16 13 C 0.06 0.73 4.40 -3.82 -0.02 0.71 16 14 N -0.51 -7.81 4.39 -244.38 -1.07 -8.88 16 15 C 0.02 0.29 9.03 60.06 0.54 0.84 16 16 C 0.05 0.77 5.45 -4.98 -0.03 0.75 16 17 C 0.45 10.20 7.51 -10.99 -0.08 10.12 16 18 O -0.57 -14.94 13.88 5.54 0.08 -14.86 16 19 N -0.58 -14.19 5.28 -10.96 -0.06 -14.25 16 20 C -0.38 -10.55 9.68 -14.93 -0.14 -10.69 16 21 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 22 C -0.01 -0.25 5.50 -17.47 -0.10 -0.34 16 23 N -0.90 -25.01 13.68 55.50 0.76 -24.25 16 24 Si 1.09 24.02 29.92 -169.99 -5.09 18.93 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 C 0.11 1.09 6.38 -2.54 -0.02 1.07 16 29 H 0.22 0.89 7.80 -54.09 -0.42 0.47 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.07 0.65 8.10 -51.93 -0.42 0.22 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.74 7.97 -51.93 -0.41 0.32 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 41 H 0.08 0.81 7.83 -51.93 -0.41 0.40 16 42 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.06 0.80 6.23 -51.93 -0.32 0.48 16 44 H 0.10 1.82 5.88 -51.93 -0.31 1.52 16 45 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 46 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 47 H 0.37 8.54 6.73 -40.82 -0.27 8.27 16 48 H 0.26 6.95 6.78 -40.82 -0.28 6.68 16 49 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 50 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 LS Contribution 411.52 15.07 6.20 6.20 Total: -1.00 -34.83 411.52 -8.61 -43.44 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -8.24 Total: 6.75 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.72 Total: 1.04 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.94 Total: -53.79 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.17 Total: -22.57 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.09 Total: 18.93 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.83 -8.61 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481484683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.584 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds