Wall clock time and date at job start Tue Mar 31 2020 18:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47058 * 74.30867 * 3 2 1 5 5 C 1.53008 * 109.47177 * 179.97438 * 4 3 2 6 6 C 1.50690 * 109.47320 * 180.02562 * 5 4 3 7 7 O 1.21287 * 120.00098 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00056 * 180.02562 * 6 5 4 9 9 C 1.47018 * 125.65029 * 359.95931 * 8 6 5 10 10 C 1.54372 * 107.29103 * 181.13095 * 9 8 6 11 11 C 1.55157 * 102.92010 * 22.13544 * 10 9 8 12 12 H 1.09003 * 111.00188 * 82.64231 * 11 10 9 13 13 C 1.53004 * 111.00251 * 206.45481 * 11 10 9 14 14 N 1.46896 * 109.47166 * 290.41738 * 13 11 10 15 15 C 1.46897 * 111.00124 * 293.95737 * 14 13 11 16 16 C 1.46902 * 110.99925 * 169.99935 * 14 13 11 17 17 C 1.50696 * 109.46978 * 190.00261 * 16 14 13 18 18 O 1.21295 * 120.00238 * 359.97438 * 17 16 14 19 19 N 1.34777 * 120.00076 * 180.02562 * 17 16 14 20 20 C 1.37105 * 120.00244 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99708 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00017 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99901 * 359.71836 * 22 20 19 24 24 Si 1.86800 * 120.00194 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72227 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72075 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72111 * 24 22 20 28 28 C 1.47431 * 125.64959 * 180.02562 * 8 6 5 29 29 H 4.44644 * 5.63280 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.46847 * 314.31243 * 3 2 1 31 31 H 1.09003 * 109.46939 * 194.31414 * 3 2 1 32 32 H 1.09004 * 109.46984 * 60.00460 * 4 3 2 33 33 H 1.08996 * 109.47842 * 299.99727 * 4 3 2 34 34 H 1.09004 * 109.46513 * 60.00508 * 5 4 3 35 35 H 1.08996 * 109.46786 * 300.00709 * 5 4 3 36 36 H 1.09001 * 109.88040 * 300.51265 * 9 8 6 37 37 H 1.08994 * 109.88145 * 61.67407 * 9 8 6 38 38 H 1.08999 * 110.69934 * 263.79182 * 10 9 8 39 39 H 1.08997 * 110.75905 * 140.50575 * 10 9 8 40 40 H 1.09000 * 109.46595 * 170.42279 * 13 11 10 41 41 H 1.08995 * 109.47112 * 50.42008 * 13 11 10 42 42 H 1.08997 * 109.47316 * 296.04141 * 15 14 13 43 43 H 1.09003 * 109.47554 * 56.04624 * 15 14 13 44 44 H 1.09007 * 109.46965 * 176.04316 * 15 14 13 45 45 H 1.08999 * 109.46697 * 70.00700 * 16 14 13 46 46 H 1.08993 * 109.47253 * 310.00350 * 16 14 13 47 47 H 0.97004 * 119.99652 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00371 * 0.28325 * 23 22 20 49 49 H 1.09003 * 110.36790 * 36.99410 * 28 8 6 50 50 H 1.09006 * 110.45708 * 274.72425 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.3892 -1.3887 5 6 4.6862 -0.3879 -1.3889 6 6 5.1887 -0.7713 -2.7568 7 8 4.4007 -1.0206 -3.6445 8 7 6.5138 -0.8372 -2.9939 9 6 7.5744 -0.5611 -2.0140 10 6 8.9259 -0.7341 -2.7397 11 6 8.5449 -0.5468 -4.2320 12 1 8.4949 0.5104 -4.4928 13 6 9.5235 -1.2883 -5.1451 14 7 10.8306 -0.6188 -5.1083 15 6 10.7510 0.7241 -5.6983 16 6 11.8560 -1.4289 -5.7794 17 6 13.2166 -0.8388 -5.5122 18 8 13.3218 0.1588 -4.8302 19 7 14.3166 -1.4188 -6.0319 20 6 15.5546 -0.8823 -5.7884 21 1 15.6482 0.0054 -5.1805 22 6 16.6886 -1.4806 -6.3237 23 7 16.5750 -2.5640 -7.0588 24 14 18.3753 -0.7492 -5.9925 25 1 18.7045 0.2359 -7.0538 26 1 18.3699 -0.0707 -4.6716 27 1 19.3921 -1.8314 -5.9890 28 6 7.1399 -1.1969 -4.2794 29 1 -1.0499 0.0002 -0.0001 30 1 3.0096 -0.7171 0.7354 31 1 3.0089 0.9966 0.2541 32 1 2.7925 0.3285 -2.1241 33 1 2.7934 -1.3851 -1.6428 34 1 5.0502 -1.1055 -0.6535 35 1 5.0487 0.6081 -1.1350 36 1 7.4809 0.4601 -1.6445 37 1 7.5055 -1.2652 -1.1849 38 1 9.3309 -1.7313 -2.5672 39 1 9.6348 0.0312 -2.4237 40 1 9.1419 -1.2842 -6.1661 41 1 9.6324 -2.3170 -4.8018 42 1 10.4957 0.6423 -6.7548 43 1 9.9844 1.3027 -5.1829 44 1 11.7142 1.2239 -5.5950 45 1 11.6677 -1.4365 -6.8530 46 1 11.8209 -2.4490 -5.3970 47 1 14.2324 -2.2164 -6.5776 48 1 15.6992 -2.9436 -7.2311 49 1 6.5618 -0.7910 -5.1096 50 1 7.2258 -2.2796 -4.3715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481484683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:00 Heat of formation + Delta-G solvation = -43.174964 kcal Electronic energy + Delta-G solvation = -27822.498442 eV Core-core repulsion = 23850.005596 eV Total energy + Delta-G solvation = -3972.492846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21524 -40.47418 -39.11672 -37.48084 -36.48635 -36.17234 -33.56789 -33.13409 -32.79249 -30.46175 -29.52646 -28.96392 -27.48700 -26.34065 -24.59880 -23.40319 -22.86498 -21.31454 -21.05903 -20.13445 -19.90673 -19.04054 -18.18516 -17.98776 -17.38495 -17.06878 -16.67925 -16.60398 -16.13734 -15.96840 -15.52775 -15.32260 -15.25948 -15.02186 -14.85659 -14.52018 -13.98584 -13.83979 -13.80322 -13.70838 -13.39991 -13.31512 -13.24996 -13.01422 -12.72660 -12.61948 -12.51680 -12.39097 -12.04343 -11.96026 -11.92543 -11.86150 -11.81076 -11.47296 -11.42777 -11.18798 -10.97640 -10.90356 -10.30497 -10.06018 -9.67145 -9.22504 -8.89415 -6.03107 1.54069 1.56625 1.60853 1.80298 1.83259 1.92124 2.03311 2.05045 2.40907 2.69582 3.19515 3.26825 3.45054 3.54562 3.66202 3.78840 3.87510 4.05659 4.11222 4.14976 4.29856 4.31086 4.35376 4.38774 4.43504 4.46017 4.50478 4.59797 4.64987 4.65169 4.67457 4.74454 4.77502 4.81480 4.91199 5.02672 5.15477 5.17775 5.19457 5.22428 5.29789 5.33430 5.40901 5.62887 5.93473 6.00672 6.15957 6.51661 6.61741 6.71720 6.79555 7.12892 7.48695 7.98122 8.58491 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.040288 B = 0.001521 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.823382 B =18402.461106 C =18689.290958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.217 4.217 3 C -0.010 4.010 4 C -0.094 4.094 5 C -0.127 4.127 6 C 0.519 3.481 7 O -0.594 6.594 8 N -0.620 5.620 9 C 0.099 3.901 10 C -0.113 4.113 11 C -0.088 4.088 12 H 0.082 0.918 13 C 0.067 3.933 14 N -0.527 5.527 15 C 0.025 3.975 16 C 0.057 3.943 17 C 0.447 3.553 18 O -0.607 6.607 19 N -0.590 5.590 20 C -0.407 4.407 21 H 0.073 0.927 22 C -0.042 4.042 23 N -0.920 5.920 24 Si 1.134 2.866 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.274 1.274 28 C 0.112 3.888 29 H 0.239 0.761 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.089 0.911 42 H 0.023 0.977 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.112 0.888 47 H 0.383 0.617 48 H 0.259 0.741 49 H 0.063 0.937 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.097 2.030 12.499 28.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.217 4.217 3 C -0.047 4.047 4 C -0.132 4.132 5 C -0.166 4.166 6 C 0.310 3.690 7 O -0.475 6.475 8 N -0.353 5.353 9 C -0.022 4.022 10 C -0.151 4.151 11 C -0.108 4.108 12 H 0.100 0.900 13 C -0.060 4.060 14 N -0.252 5.252 15 C -0.123 4.123 16 C -0.074 4.074 17 C 0.234 3.766 18 O -0.492 6.492 19 N -0.229 5.229 20 C -0.536 4.536 21 H 0.091 0.909 22 C -0.240 4.240 23 N -0.559 5.559 24 Si 0.955 3.045 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.199 1.199 28 C -0.011 4.011 29 H 0.255 0.745 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.042 0.958 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.130 0.870 47 H 0.217 0.783 48 H 0.070 0.930 49 H 0.081 0.919 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.744 2.435 12.718 27.045 hybrid contribution -2.031 -0.366 -1.315 2.447 sum -25.775 2.068 11.404 28.261 Atomic orbital electron populations 1.25717 0.97138 1.00885 1.00152 1.23850 0.95875 1.00837 1.01094 1.18849 0.83706 1.04598 0.97504 1.21175 0.93775 1.01887 0.96355 1.21692 0.96187 1.05995 0.92698 1.21110 0.80185 0.76141 0.91600 1.90698 1.55615 1.52338 1.48826 1.48658 1.05440 1.67873 1.13327 1.22312 0.85483 1.02722 0.91731 1.22548 0.95735 1.03564 0.93228 1.22239 0.92159 1.00063 0.96311 0.89965 1.22098 0.87164 0.98326 0.98459 1.61491 1.05261 1.02743 1.55656 1.22455 1.02740 0.90697 0.96369 1.21753 0.88924 0.98363 0.98360 1.20772 0.86580 0.86066 0.83159 1.90467 1.87161 1.28456 1.43083 1.42011 1.06096 1.27453 1.47358 1.20529 0.85283 1.13410 1.34411 0.90872 1.27752 1.06852 0.95510 0.93899 1.70942 1.26556 1.20868 1.37563 0.82606 0.69729 0.75293 0.76921 1.19748 1.20207 1.19892 1.22132 0.92562 0.99931 0.86487 0.74498 0.87506 0.87605 0.92920 0.92787 0.85868 0.86069 0.89523 0.89001 0.90359 0.90063 0.93886 0.89285 0.95813 0.89957 0.92713 0.91744 0.87018 0.78284 0.92993 0.91874 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.13 19.25 74.32 1.43 -1.70 16 2 C -0.22 -3.32 13.34 31.13 0.42 -2.91 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.07 16 4 C -0.09 -1.27 4.46 30.59 0.14 -1.14 16 5 C -0.13 -1.27 4.89 29.85 0.15 -1.13 16 6 C 0.52 10.06 7.85 87.65 0.69 10.75 16 7 O -0.59 -17.20 16.24 -3.05 -0.05 -17.25 16 8 N -0.62 -10.43 3.33 -811.75 -2.70 -13.13 16 9 C 0.10 1.13 6.49 86.75 0.56 1.69 16 10 C -0.11 -1.78 6.32 31.80 0.20 -1.58 16 11 C -0.09 -1.57 2.94 -9.41 -0.03 -1.59 16 12 H 0.08 1.57 6.34 -2.39 -0.02 1.55 16 13 C 0.07 1.37 4.40 86.31 0.38 1.75 16 14 N -0.53 -15.19 4.39 -927.07 -4.07 -19.26 16 15 C 0.03 0.75 9.03 127.69 1.15 1.91 16 16 C 0.06 1.84 5.45 85.56 0.47 2.31 16 17 C 0.45 20.45 7.51 87.66 0.66 21.11 16 18 O -0.61 -32.37 13.88 -3.08 -0.04 -32.41 16 19 N -0.59 -29.32 5.28 -306.98 -1.62 -30.94 16 20 C -0.41 -22.92 9.68 84.04 0.81 -22.11 16 21 H 0.07 4.43 7.16 -2.91 -0.02 4.41 16 22 C -0.04 -2.26 5.50 84.92 0.47 -1.79 16 23 N -0.92 -50.88 13.68 21.66 0.30 -50.58 16 24 Si 1.13 48.10 29.92 68.60 2.05 50.15 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 26 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 C 0.11 2.04 6.38 86.85 0.55 2.60 16 29 H 0.24 1.71 7.80 -4.42 -0.03 1.68 16 30 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.93 8.10 -2.38 -0.02 0.91 16 33 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 34 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 1.26 7.97 -2.39 -0.02 1.24 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.04 0.83 8.12 -2.39 -0.02 0.81 16 41 H 0.09 1.62 7.83 -2.39 -0.02 1.60 16 42 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 2.05 6.23 -2.39 -0.01 2.04 16 44 H 0.05 2.11 5.88 -2.38 -0.01 2.09 16 45 H 0.06 1.88 8.12 -2.39 -0.02 1.86 16 46 H 0.11 3.08 7.93 -2.39 -0.02 3.06 16 47 H 0.38 17.53 6.73 -92.71 -0.62 16.91 16 48 H 0.26 13.85 6.78 -92.71 -0.63 13.22 16 49 H 0.06 1.33 8.04 -2.39 -0.02 1.31 16 50 H 0.07 1.27 8.03 -2.38 -0.02 1.26 16 Total: -1.00 -78.22 411.52 2.51 -75.71 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.44 Total: 29.48 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 8.21 Total: 8.24 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -8.10 Total: -113.91 kcal Atomic # 8 Polarization: -49.57 SS G_CDS: -0.09 Total: -49.67 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.05 Total: 50.15 kcal Total: -78.22 2.51 -75.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481484683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.533 kcal (2) G-P(sol) polarization free energy of solvation -78.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds